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Manisha Barse

@mbarse.bsky.social
84 followers 43 following 8 posts

Data Science Research Assistant at LIBD manishabarse.github.io #bioinformatics #Rstats @libdrstats.bsky.social @lieberinstitute.bsky.social @Bioconductor.bsky.social/🧠 genomics @lcolladotor.bsky.social

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Manisha Barse @mbarse.bsky.social · 05/12/2025
Hi! Check out my #RStats session on #R ’s object systems at @libdrstats.bsky.social - classes, objects, methods, & how all this drives our #bioinformatics workflows. Niche? Yes. But fascinating!⚙️🔧🧠✨ 🎥 youtu.be/EEqIJaDIb1I 🛝 speakerdeck.com/manishabarse... @lieberinstitute.bsky.social #OOP #S3 #S4
youtu.be
[2025-10-10] OOP in R: Understanding S3 and S4 systems
YouTube video by Leonardo Collado Torres
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Reposted by Manisha Barse
Louise Huuki-Myers @lahuuki.bsky.social · 04/11/2025
Proud to announce our paper ‘Transcriptomic Analysis of the Human Habenula in Schizophrenia’ from @lieberinstitute.bsky.social is the cover article for the November issue of the American Journal of Psychiatry! 🧠 #HabenulaLIBD #snRNAseq #Habenula doi.org/10.1176/appi...
doi.org
Transcriptomic Analysis of the Human Habenula in Schizophrenia | American Journal of Psychiatry
Objective: The objective of this study was to define the molecular neuroanatomy of the human habenula (Hb) and identify transcriptomic differences between brains of individuals with schizophrenia and ...
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Manisha Barse @mbarse.bsky.social · 02/09/2025
Hi everyone! Check my journal club talk on the latest review paper: Cell-type deconvolution methods for spatial transcriptomics 🧬 🎥 www.youtube.com/watch?v=xDjF... 🛝 speakerdeck.com/manishabarse @lieberinstitute.bsky.social #Bioinformatics #SpatialTranscriptomics #Cell-TypeDeconvolution
youtube.com
[2025-08-13] Journal club: Cell-type deconvolution methods for spatial transcriptomics
YouTube video by Leonardo Collado Torres
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Manisha Barse @mbarse.bsky.social · 06/06/2025
Hi everyone! Check my beginner-friendly #RStats talk at @lieberinstitute.bsky.social on reshaping, joining, binding, & set ops- all #tidyverse way! Shared simple demo to handle data better! 🎥 youtu.be/5L133h_1SNo 🛝 speakerdeck.com/manishabarse... @libdrstats.bsky.social #DataWrangling #DataScience
youtu.be
[2025-05-30] Reshaping data, Joining tables
YouTube video by Leonardo Collado Torres
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Manisha Barse @mbarse.bsky.social · 23/05/2025
Presented at @lieberinstitute.bsky.social #RStats club on pseudobulk analysis using pseudoBulkDGE()📊 A handy wrapper for DE analysis following OSCA guidelines-shared a demo & walked through the method!✨ 🎥 youtu.be/0OkWBLyLrfg 🛝 speakerdeck.com/manishabarse... @libdrstats.bsky.social #Bioinformatics
youtube.com
[2025-05-02] pseudobulk analysis with pseudoBulkDGE()
YouTube video by Leonardo Collado Torres
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Manisha Barse @mbarse.bsky.social · 22/05/2025
Hi! Check my journal club talk: smart ML method to deconvolute pooled snRNA-seq using sex-specific expression🧬 Thanks @daylab.bsky.social & @rphillips3.bsky.social for this approach🙌 🎥 youtu.be/zpeCFwYfV3o 🛝 speakerdeck.com/manishabarse #snRNAseq #ML #Bioinformatics @lieberinstitute.bsky.social
youtu.be
[2025-04-23] Journal club on "[...] deconvolution of pooled snRNA-seq using sex-dependent gene expr"
YouTube video by Leonardo Collado Torres
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Manisha Barse @mbarse.bsky.social · 15/11/2024
Hi Bluesky! 👋 I'm new here and excited to share that I recently gave my first presentation for the #RStats club! I talked about the metrics summary CSV files generated by SpaceRanger for #Visium spatial transcriptomics. Looking forward to connecting and learning together! 🌟
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