iiinova — where your digital self keeps evolving

Reposted by Matthieu Najm

Rémi Trimbour - MD-PhD student @remitrimbour.bsky.social · 20/01/2026

ReCoN: REconstruction of multicellular COrdination Network We are releasing a new tool to model multicellular coordination and cellular responses in tissu! 🫀🫁 The package is just out, and the preprint should follow within a few days😇 If you want to have a look already: github.com/cantinilab/R...

github.com

GitHub - cantinilab/ReCoN: Exploring multicellular coordination from single-cell gene expression / multi-omics using mutlilayer network representations

Exploring multicellular coordination from single-cell gene expression / multi-omics using mutlilayer network representations - cantinilab/ReCoN

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Reposted by Matthieu Najm

Lucie GB. @lgaspardboulinc.bsky.social · 07/07/2025

Can't wait to be at @jobim2025.bsky.social #JOBIM25 to present a short demo on the companion ShinyApp (shorturl.at/Os7kB) of our review "Cell-type deconvolution for spatial transcriptomics" recently published in @natrevgenet.nature.com ! #spatial #genomics

shorturl.at

Deconvolution toolbox for spatial transcriptomics

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Reposted by Matthieu Najm

Computational System Biology of Cancer @sysbiocurie.bsky.social · 10/06/2025

Last week to register ! Don't miss this great opportunity

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Reposted by Matthieu Najm

Sebastian Lobentanzer @slobentanzer.bsky.social · 25/03/2025

Yes, there's "accessible" in my group's title. Come at me, Trump! Just kidding, don't come at me, except if you're looking for a job in biomedical AI. Hiring at all levels, up to 100% of E13. If you're enthusiastic about science and open source, consider applying! Please help spread the word. :)

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Reposted by Matthieu Najm

Kelly Charniga @kcharniga.bsky.social · 07/03/2025

Big turnout today in Paris to show solidarity with US-based scientists ❤️ 🗽 #StandUpforScienceFrance @pasteur.fr

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Reposted by Matthieu Najm

Théo Maire @theomaire.bsky.social · 11/02/2025

Very grateful to have been awarded a #MSCA post-doc fellowship! With Felix Hol and Teun Bousema, we will bring BuzzWatch to the field to study mosquito behavior in malaria-endemic regions. Starting in #RadboudUmc, our first goal is to make BuzzWatch portable enough to be transported by bicycle 🦟🚲🇳🇱.

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Reposted by Matthieu Najm

Saez-Rodriguez Group @saezlab.bsky.social · 05/02/2025

Applying LLMs to biomedical research today can go one of two ways: we either use a closed-source web app, or we get coding ourselves. Many researchers lack training for the latter, so their only choice is the former. We want to change that. www.nature.com/articles/s41...

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Reposted by Matthieu Najm

Théo Maire @theomaire.bsky.social · 27/01/2025

Thrilled to share 'BuzzWatch', my post-doc work with Felix Hol and @lambrechtslab.bsky.social ➡️Filming mosquitoes in a cage with a €15 camera but for 700h(1month) revealed fascinating insights into their behavior⌛🦟🎥⏳ preprint🔍 doi.org/10.1101/2025... DIY guide 🛠️ theomaire.github.io/buzzwatch 🧵⬇️

doi.org

BuzzWatch: uncovering multi-scale temporal patterns in mosquito behavior through continuous long-term monitoring

Understanding the temporal dynamics of mosquito behavior is essential for developing effective interventions against pathogen transmission. However, limited knowledge exists about the environmental, p...

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Reposted by Matthieu Najm

Gabriel Peyré @gabrielpeyre.bsky.social · 22/01/2025

The Mathematics of Artificial Intelligence: In this introductory and highly subjective survey, aimed at a general mathematical audience, I showcase some key theoretical concepts underlying recent advancements in machine learning. arxiv.org/abs/2501.10465

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Matthieu Najm @mattanajm.bsky.social · 20/12/2024

Excited to share the final work from my PhD: our study on developing a signalling network gathering the molecular dysregulations caused by the absence of CFTR in cystic fibrosis (CF). Read the full article published in the journal BMC Genomics at: doi.org/10.1186/s128... 1/5

doi.org

From CFTR to a CF signalling network: a systems biology approach to study Cystic Fibrosis - BMC Genomics

Background Cystic Fibrosis (CF) is a monogenic disease caused by mutations in the gene coding the Cystic Fibrosis Transmembrane Regulator (CFTR) protein, but its overall physio-pathology cannot be sol...

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