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martin-matl.bsky.social

@martin-matl.bsky.social
43 followers 81 following 3 posts
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Zeke Hausfather @zekehausfather.com · 05/08/2026
Published estimates of AI energy use per prompt (~0.3 watt-hours) appear reassuring small. But they are increasingly disconnected from how we actually use AI. Modern agentic tools use around 600 times more energy per prompt, as I discuss in my latest over at The Climate Brink www.theclimatebrink....
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Plaschka lab @plaschkalab.bsky.social · 18/06/2026
Now published! We investigated how polyadenylated RNAs are targeted for decay in the human nucleus. www.nature.com/articles/s41... (1/5)
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Julian Ross @jamesjulianross.bsky.social · 18/05/2026
Thrilled to see my main PhD work out on bioRxiv! Huge thanks to @arburga.bsky.social and my wonderful labmates, collaborators, colleagues and friends @imbavienna.bsky.social @viennabiocenter.bsky.social for a detailed breakdown see below 👇
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Laura Lorenzo Orts @lorenzoorts.bsky.social · 08/05/2026
We should all think twice before providing personal feedback on scientific presentations. For example, criticizing an accent is pointless. If you had difficulty understanding a presentation, suggest that the speaker slow down; don't point out their origin.
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Julius Brennecke @juliusbrennecke.bsky.social · 13/02/2026
The demystification of piRNA clusters if you wonder how cells generate piRNAs specifically against transposons & you are looking for a weekend read check out @86dominik.bsky.social's opus magna (or Dominik's great thread) a shared project with the one and only Rippei Hayashi, lab alumnus & friend
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Dominik Handler @86dominik.bsky.social · 13/02/2026
How does the piRNA pathway solve the self vs. non-self problem? 🧬 Since piRNAs come from single-stranded RNA, how does the cell choose the right ones? For years, "piRNA clusters" were seen as THE privileged source. But are they really special and earmarked for biogenesis? (1/19)
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martin-matl.bsky.social @martin-matl.bsky.social · 10/02/2026
Soon-to-be landmark paper on how the piRNA pathway achieves specificity against transposon sequences by @86dominik.bsky.social , @rippei.bsky.social and others is now out as a preprint on bioRxiv!
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Institute of Molecular Biology (IMB) @imbmainz.bsky.social · 06/02/2026
@lorenzoorts.bsky.social previously worked as a postdoctoral fellow at @impvienna.bsky.social in Austria. She will establish a new lab at IMB to investigate how mRNA translation is activated in the early embryo. Welcome to IMB Laura! 💐 Read more here: www.imb.de/about-imb/ne...
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Institute of Molecular Biology (IMB) @imbmainz.bsky.social · 09/02/2026
Ulrich’s research will help advance our understanding of RNA biology & gene regulation, as well as how these mechanisms might be altered during viral infections & other diseases. @hohmannulrich.bsky.social comes from the @impvienna.bsky.social / @imbavienna.bsky.social www.imb.de/about-imb/ne...
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Changwei YU @changweiyu.bsky.social · 22/12/2025
Very happy to share my postdoc work (on preprint), where we try to understand a long-standing transcription-silencing paradox, and uncovered a hidden RNA decay arm of nuclear piRNA pathway, see detailed threads quoted from @juliusbrennecke.bsky.social
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Plaschka lab @plaschkalab.bsky.social · 19/12/2025
Our leaving gift and starter-pack for @hohmannulrich.bsky.social to open his new lab at @imbmainz.bsky.social! Ulrich has made many exciting contributions to RNA packaging. We will miss him and his dry humor, and can't wait to see what he will discover in his lab!
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Dominik Handler @86dominik.bsky.social · 14/10/2025
When transposons jump, genomes diverge - even in cultured cells. I am happy to share our new preprint: a chromosome-scale genome assembly for Drosophila OSC cells, one of the key model systems in the piRNA field, especially for nuclear piRNA biology. 🧬🧵 (1/12)
Graphical abstract: The Drosophila OSC Genome as a resource for transposon and piRNA biology. The figure illustrates the workflow and key findings. Left: De novo genome assembly using Oxford Nanopore Technologies (ONT) long reads and Hi-C data generates a phased assembly distinguishing unique (blue) and repetitive (orange) sequences. Dot plot comparison between OSC-r1.01 and dm6 reference genomes shows overall synteny with extensive structural variation. Middle: A freely accessible UCSC genome browser session displays multi-omics data tracks including gene models, transposon insertions, chromatin accessibility, transcription, small RNAs, and histone modifications. Right: New insights into flamenco piRNA cluster biology reveal >730 kb transcribed from a single promoter without major splicing. Tethering assays demonstrate long-range silencing effects across the locus, and genome browser tracks show coordinated regulation of piRNA production, transcription, and chromatin state. This resource enables comprehensive studies of transposon regulation and piRNA pathway function in a widely-used Drosophila cell line.
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Julius Brennecke @juliusbrennecke.bsky.social · 07/11/2025
just in time for the opening of the @hohmannulrich.bsky.social group at @imbmainz.bsky.social what started as a project on how cells export piRNA precursors, ended up as a tour de force in mRNA export. truly wonderful collaboration with @plaschkalab.bsky.social at the @viennabiocenter.bsky.social
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Julius Brennecke @juliusbrennecke.bsky.social · 18/10/2025
what you always wanted to know about the molecular choreography of nuclear mRNA packaging and export. thought-provoking review by our colleagues (local or in the RNA community). @plaschkalab.bsky.social @rupertfaraway.bsky.social @thezenklusen.bsky.social www.annualreviews.org/content/jour...
annualreviews.org
Mechanisms of Messenger RNA Packaging and Export
The packaging and export of messenger RNA (mRNA) are essential cellular pathways that bridge the nuclear and cytoplasmic phases of eukaryotic gene expression. During their nuclear maturation, mRNAs ar...
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Baptiste Rafanel @baptisterafanel.bsky.social · 14/08/2025
1/ How do animals develop immunity against a newly encountered transposable element from scratch? Our study reveals that the mobility of TEs is their Achilles heel, allowing hosts to develop a powerful small RNA-mediated silencing response. www.biorxiv.org/content/10.1...
biorxiv.org
Antisense transposon insertions into host genes trigger piRNA mediated immunity
Transposable elements pose a persistent threat to genome integrity, yet how host defense systems adapt to newly invading elements remains poorly understood. Here, we reveal how Drosophila melanogaster...
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The Guardian @theguardian.com · 06/10/2025
Greta Thunberg among 171 Gaza flotilla activists deported by Israel; ceasefire negotiations due to begin in Egypt – Middle East crisis live
theguardian.com
Greta Thunberg among 171 Gaza flotilla activists deported by Israel; ceasefire negotiations due to begin in Egypt – Middle East crisis live
Activists deported to Greece and Slovakia; negotiators from the US, Israel and Hamas are set to begin talks
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Pauli Group (posts by Andi Pauli) @pauligroup.bsky.social · 05/10/2025
Congratulations to @vdeneke.bsky.social & Andreas Blaha @impvienna.bsky.social for their research on vertebrate fertilization, which was awarded this year's ÖGMBT Life Science Research Award in Austria for basic research!
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martin-matl.bsky.social @martin-matl.bsky.social · 01/10/2025
A well deserved award for @mjkellner.bsky.social on his awesome PhD work! Max is one of the most inspiring scientists I've been privilleged to meet. Happy to see his PhD work recognized by the ÖGMBT!
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Ben Sanderson @benmsanderson.bsky.social · 29/09/2025
Paris-Berlin sleeper: low carbon, 2 years old, constantly full, but currently losing SNCF a few million EUR/yr Intl Jet fuel tax exemptions are 80 years old and cost the EU 22 million EUR/yr for the Paris-Berlin route alone. And you're cutting... the sleeper? www.theguardian.com/travel/2025/...
theguardian.com
It’s goodnight Vienna as Paris sleeper train to Austria and Berlin hit by cuts
Some Nightjet services suspended from mid-December after French withdrawal amid public budget crisis
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Ulrich Hohmann @hohmannulrich.bsky.social · 23/09/2025
How are RNAs sorted for export vs. degradation in the nucleus? In collaboration with @heick.bsky.social’s lab we (@clemensplaschka.bsky.social and @juliusbrennecke.bsky.social labs) discovered a direct mechanistic link between the export and decay machineries: www.biorxiv.org/content/10.1... (1/x)
biorxiv.org
Molecular basis of polyadenylated RNA fate determination in the nucleus
Eukaryotic genomes generate a plethora of polyadenylated (pA+) RNAs[1][1],[2][2], that are packaged into ribonucleoprotein particles (RNPs). To ensure faithful gene expression, functional pA+ RNPs, in...
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Ralf Jansen @ralfjansen.bsky.social · 02/08/2025
My colleagues Baptise Rafanel et al. investigated how a newly invading transposon can be silenced. They found that not only antisense insertions in piRNA clusters such as flamenco, but also insertions in the 3‘UTR of genes can drive potent silencing.
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martin-matl.bsky.social @martin-matl.bsky.social · 17/07/2025
Our open source RT-LAMP paper is finally out! A major collaboration spanning two continents and wonderful contributions of many amazing people! You can read all about how we want to give diagnostics into the public domain here 👇 www.life-science-alliance.org/content/8/10...
life-science-alliance.org
A lyophilized open-source RT-LAMP assay for molecular diagnostics in resource-limited settings
A critical bottleneck for equitable access to population-scale molecular diagnostics is the limited availability of rapid, inexpensive point-of-care tests, especially in low- and middle-income countri...
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Today headline @todayheadline.bsky.social · 14/07/2025
Novel open-source diagnostic tool offers affordable, reliable pathogen detection for resource-limited settings Researchers have developed an open-source reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay that is lyophilized for heat stability and uses non-proprietary…
todayheadline.co
Novel open-source diagnostic tool offers affordable, reliable pathogen detection for resource-limited settings
Researchers have developed an open-source reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay that is lyophilized for heat stability and uses non-proprietary components, making it an affordable tool for pathogen detection in diverse settings. Credit: 2025 Matl et al. Originally published in Life Science Alliance. 10.26508/lsa.202403167?PR A bottleneck in ensuring access to widespread molecular diagnostics, especially in low- and middle-income countries, has been the high cost and logistical complexities associated with rapid, point-of-care tests.
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tomtom-auer.bsky.social @tomtom-auer.bsky.social · 16/07/2025
A great collaborative effort of many labs across continents: @vbcscitraining.bsky.social, WACCBIP, TReND in Africa and more. Now a first paper on #open-source RT-LAMP #diagnostics is out: urldefense.com/v3/__https:/... Congrats to the whole team. We hope this pushes affordable diagnostics in #LMICs
urldefense.com
A lyophilized open-source RT-LAMP assay for molecular diagnostics in resource-limited settings
A critical bottleneck for equitable access to population-scale molecular diagnostics is the limited availability of rapid, inexpensive point-of-care tests, especially in low- and middle-income countri...
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