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Lucie Zinger

@luciezinger.bsky.social
1.5K followers 1K following 14 posts

Researcher at @cnrs.bsky.social, #CRBE, Toulouse. #communityecology for 🦠🍄🕷🐜, #metabarcoding, #eDNA 🧬.

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Lucie Zinger @luciezinger.bsky.social · 23/07/2026
Happy to share our latest research on the #biogeography of tropical dry forest #soil_biodiversity 🦠🍄🪱🐜🪲 in Colombia 🇨🇴 Great collaboration between the Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, CNRS, and INRAE. OA paper 👉 biogeography.pensoft.net/article/1821...
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François-Xavier Joly @fxjoly.bsky.social · 09/04/2026
📣 Fully-funded PhD position at INRAE, within the Eco&Sols unit in Montpellier, France: General principles of detritivore faeces production in temperate ecosystems 📄Full description --> www.dropbox.com/scl/fi/fr028... Please get in touch to apply, or share in your network!
Image of soil detritivores and their faeces, and details of the PhD: 

General principles of detritivore faeces production in temperate ecosystems

Dr. François-Xavier Joly, UMR Eco&Sols, Montpellier, France Dr. Benjamin Pey, UMR CRBE, Toulouse, Montpellier

3-year fully-funded PhD position
Starting Oct. 2026
INRAE
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Lucie Zinger @luciezinger.bsky.social · 21/01/2026
Capturing the DNA of the rainforest in the rain 🌧️🧬 to describe the biodiversity hidden in tropical forests canopies 🌳🙈🪲✨ Our work on rain eDNA now translated for a younger audience! For teachers looking for examples! #STEM #TropicalBiology #eDNA #TeacherSupport #ScienceOutreach
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Lucie Zinger @luciezinger.bsky.social · 19/11/2025
Huge congrats to our dearest and now Dr. @emmafromm.bsky.social 🎓 ✨🥳✨, who brightly defended her PhD on climate warming direct and indirect impact the gut microbiota of lizards.🌡️🦎🦠 We are incredibly proud 😊 🥹 Co-supervised with Julien Cote @erc.europa.eu #CRBE #Microbiome #ClimateChange #Ecology
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Florian Altermatt @florianaltermatt.bsky.social · 04/11/2025
2-years #postdoc #position: #eDNA 🧬🔬for integrated #ecosystem and #biodiversity assessment apply.refline.ch/673277/1297/... In the new Eawag/WSL Biodiversity Monitoring Initiative we will strengthen & advance effective and scalable #biodiversity #monitoring methods & implement into practice. 🌐🌳🐟📈
apply.refline.ch
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Lucie Zinger @luciezinger.bsky.social · 04/11/2025
Retour sur quatorze années de recherche sur la #biodiversité #tropicale d'Amazonie avec le Centre d’Etude de la Biodiversité Amazonienne (Labex #CEBA) 😍 - Un grand merci à Jerôme Chave et tous les autres acteurs du LabEx! anr.fr/fr/actus/det...
anr.fr
Plongée au cœur de quatorze années de recherche sur la biodiversité amazonienne avec le laboratoire d’excellence (Labex) CEBA (Centre d’Etude de la Biodiversité Amazonienne)
La Guyane est un laboratoire naturel idéal pour étudier la biodiversité tropicale. Depuis 14 ans, le Labex CEBA, basé en Guyane française et porté par le CNRS, cherche à comprendre l’origine et le mai...
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Lucie Zinger @luciezinger.bsky.social · 09/09/2025
Thrilled to see our latest paper on rainwash #eDNA to be featured in @mongabay.com. A huge thank you to Liz Kimbrough for this nice coverage. We appreciate you highlighting our work! news.mongabay.com/2025/09/rain...
news.mongabay.com
Rainwater reveals the hidden life of rainforest canopies, study shows
In the rainforest, much of life dwells in the tree canopy. But getting up there to study it isn’t easy. By the time a human has clumsily lumbered up from the ground, most of the critters have scattere...
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International Biodiversity @ibioconsultants.com · 26/08/2025
Great to see more innovation with eDNA this time looking at rainwater in tropical forests for greater insights 🌍 #TropicalEcology #TropicalForests #eDNA phys.org/news/2025-08...
phys.org
DNA from rainwater provides a window into tropical canopy biodiversity
Tropical rainforests still represent a treasure trove of undiscovered species. While many species of plants, animals, and insects have been identified over the years, some parts of these tropical ecos...
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Lucie Zinger @luciezinger.bsky.social · 13/08/2025
Our paper on using #eDNA from rainwater to study hidden biodiversity in #tropical #forest #canopies is now out in Science Advances! This method is a major step forward for the study and #conservation of this inaccessible compartiment. www.science.org/doi/10.1126/... Photo: J. Raynaud
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Florian Altermatt @florianaltermatt.bsky.social · 04/07/2025
Apply now: #PhD #position “Advancing environmental DNA (#eDNA) approaches to future-proof #environmental #monitoring of #aquatic #ecosystems” 🧬 🔎 🦐 🧪 🐟 (4 years position) ➡️ apply.refline.ch/673277/1268/... Thanks for sharing to suitable candidates! @eawag.bsky.social
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Moler @envdna.bsky.social · 15/06/2025
An isothermal workflow for low-cost and PCR-free field-based community metabarcoding #eDNA #environmentalDNA besjournals.onlinelibrary.wiley.com/doi/full/10....
besjournals.onlinelibrary.wiley.com
An isothermal workflow for low‐cost and PCR‐free field‐based community metabarcoding
DNA metabarcoding has revolutionized our ability to monitor ecosystems. However, the method is still rarely used in developing countries where resources are limited and fieldwork is challenging. ...
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Bettina Thalinger @bettinathal.bsky.social · 10/06/2025
🚨 Out now in #EnvironmentalDNA led by #MiwaTakahashi: Results of a huge, global effort to facilitate the publication of raw and processed #eDNA data & ensure that dataset we are currently generating, adhere to the #FAIR principles & won't be lost. @gbif.org, #ENA, doi.org/10.1002/edn3...
doi.org
A Metadata Checklist and Data Formatting Guidelines to Make eDNA FAIR (Findable, Accessible, Interoperable, and Reusable)
Environmental DNA (eDNA) has emerged as a transformative tool for biodiversity monitoring and species detection, yet inconsistent metadata practices hinder data interoperability and reuse. To address...
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Antoine Zalc @antoinezalc.bsky.social · 05/05/2025
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eDNAqua-Plan Project @ednaquaplan.bsky.social · 17/04/2025
The failure to correctly identify species using #eDNA may be biological rather than methodological. Find out how mitogenomics sequences can address this challenge. 👉 bit.ly/3vKxTh9 #DNA #genomics #Data #Observation #Science #Research
bit.ly
Creating, curating and evaluating a mitogenomic reference database to improve regional species identification using environmental DNA
Species detection using eDNA is revolutionizing global capacity to monitor biodiversity. However, the lack of regional, vouchered, genomic sequence information—especially sequence information that in...
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debpaul.bsky.social @debpaul.bsky.social · 15/04/2025
📢 #eDNA? @tdwg.org @gbif.org #SPNHC #idigbio @dissco.bsky.social @prairieresearch.bsky.social join #TWT2025 TaxonWorks Together: connecting eDNA to vouchers, inventories, provenance, scaling, identifiers, fieldwork, standards, AI & collections. Need new connections? 🪡https://together.taxonworks.org/
screenshot describing the eDNA session at TaxonWorks Together 2025 (May 6 - 8) to talk about connecting eDNA data for more use and discoverability. https://together.taxonworks.org/
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Jens-Christian Svenning @jcsvenning.bsky.social · 14/04/2025
🌿 Our new study in @natplants.nature.com: Most European temperate forest plants are associated with semi-open, herbivore-shaped habitats—not closed-canopy #forests 🐎🌳🔆🌸 Highlights the need for trophic #rewilding in #conservation & need to avoid uniform dense #reforestation🌿 📄 doi.org/10.1038/s414...
doi.org
Temperate forest plants are associated with heterogeneous semi-open canopy conditions shaped by large herbivores - Nature Plants
Temperate forest plants favour heterogeneous semi-open woodlands associated with high herbivore densities, rather than uniform closed-canopy forests. Herbivore loss is therefore a probable driver of e...
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Juan Pierella Karlusich @jjpk.bsky.social · 11/04/2025
Patterns and drivers of diatom diversity andabundance in the global ocean rdcu.be/ehlG4
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Florian Altermatt @florianaltermatt.bsky.social · 26/03/2025
Our study ‘The #global #human impact on #biodiversity’ is out in @nature.com: www.nature.com/articles/s41... 🌍🌐🐟🌿🪲 Unprecedented synthesis of >2000 studies led by @francoiskeck.bsky.social shows humans are not only shrinking species numbers—but reshaping entire communities across the planet. 🧵1/5
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IPBES @ipbes.net · 27/03/2025
Biodiversity Media Grants 2025 – approaching deadline! 🌍🧪 @earthjournalism.bsky.social is offering grants (up to €12k) to media organizations from low- or middle-income countries to boost #biodiversity reporting. Deadline: 📅 March 30, 2025 🔗Apply 👉 loom.ly/oll1WRE
An announcement image for Biodiversity Media Grants 2025 featuring a vibrant close-up photo of a multicolored chameleon on a branch against a blurred green background. The text describes EJN's grant program offering €10,000-12,000 to organizations for biodiversity reporting projects. The deadline "APPLY BY MARCH 30, 2025" appears in white text on a green banner. The Earth Journalism Network logo is visible at the bottom. The image combines professional typography with nature photography, using a green color scheme that complements the biodiversity theme.
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Erin Hahn (she/her) @erinhahn.bsky.social · 07/03/2025
🚀 Preprint alert! 🚀 #AirDNA – game changer or hot air? Fresh from last year’s @sednasociety.bsky.social Airborne #eDNA workshop, we’ve distilled the latest research, key challenges, and a roadmap to turn this emerging tool into real-world solutions. Check it out! 👇 🔗 doi.org/10.32942/X2S...
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Lucie Zinger @luciezinger.bsky.social · 28/02/2025
Happy to share the preprint of our work on rain #eDNA to study tropical forest biodiversity 🌧️🧬🌴
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AquaEcOmics @aquaecomics.mastodon.social.ap.brid.gy · 24/02/2025
Have a look at our final program #aquaecomics2025 #omics #edna #metabarcoding #metagenomics aquaecomics.symposium.inrae.fr/prog…
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Methods in Ecology and Evolution @methodsinecoevol.bsky.social · 18/02/2025
Sign up to our next MEE live now! Join Abby Keller for this free online workshop, to find out more about eDNAjoint, new eDNA modelling tool 🧬 🌎 🧪 📆 19th March, 4pm GMT Find more information and register here 👇 buff.ly/4k2hjO8
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American Naturalist / ASN 🐌 @asn-amnat.bsky.social · 11/02/2025
Special Feature available ahead of print! Stark et al. revisit assumptions in the metabolic theory of ecology that explains macroecological patterns in biological rates from individuals to ecosystems through fundamental constraints on metabolism. www.journals.uchicago.edu/doi/10.1086/...
journals.uchicago.edu
Toward a More Dynamic Metabolic Theory of Ecology to Predict Climate Change Effects on Biological Systems | The American Naturalist
Abstract The metabolic theory of ecology (MTE) aims to link biophysical constraints on individual metabolic rates to the emergence of patterns at the population and ecosystem scales. Because MTE links...
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Ricard Solé @ricardsole.bsky.social · 12/02/2025
What separates life from death? Mary Shelley once wrote: "To understand life, we first need to understand death". In this movie, we see how a single-celled organism dies. The same matter in both pictures. It is not the same state or the same integrated complexity. youtube.com/watch?v=4bj6...
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American Naturalist / ASN 🐌 @asn-amnat.bsky.social · 13/02/2025
"Pollen Wars: Explosive Pollination Removes Pollen Deposited from Previously Visited Flowers" Anderson et al. find that explosive pollination may confer a pre-pollination, male-competition advantage to plants. Summary & analysis by Andrea Romero: www.amnat.org/an/newpapers...
deposited pollen exploding out of a flower when pollinated again
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Reindert Nijland @reindertn.bsky.social · 11/02/2025
Super happy our paper on #eDNA #metabarcoding of North Sea fish using @nanoporetech.com sequencing is finally published in Molecular Ecology Resources: onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
The Long and the Short of It: Nanopore‐Based eDNA Metabarcoding of Marine Vertebrates Works; Sensitivity and Species‐Level Assignment Depend on Amplicon Lengths
To monitor the effect of nature restoration projects in North Sea ecosystems, accurate and intensive biodiversity assessments are vital. DNA-based techniques and especially environmental (e)DNA metab....
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Franciska de Vries 🟥 @frantecol.bsky.social · 11/02/2025
On #InternationalDayofWomenandGirlsinScience let me remind you that we are NOWHERE NEAR parity. A few examples. 1. Women are credited less in science than men. www.nature.com/articles/s41...
nature.com
Women are credited less in science than men - Nature
The difference between the number of men and women listed as authors on scientific papers and inventors on patents is at least partly attributable to unacknowledged contributions by women scientists.
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Moler @envdna.bsky.social · 08/02/2025
ATL_FISHREF: A 12S mitochondrial reference dataset for metabarcoding Atlantic fishes frequently caught during scientific surveys in the Bay of Biscay #eDNA #environmentalDNA esj-journals.onlinelibrary.wiley.com/doi/abs/10.1...
esj-journals.onlinelibrary.wiley.com
ATL_FISHREF: A 12S mitochondrial reference dataset for metabarcoding Atlantic fishes frequently caught during scientific surveys in the Bay of Biscay
The data provided here consists of barcoding 86 species of fishes covering the partial DNA sequence of the 12S mitochondrial ribosomal gene. We generated 156 12S sequences and “Teleo” barcodes from f...
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Moler @envdna.bsky.social · 08/02/2025
Accounting for false positives and negatives in monitoring data from sensor networks and eDNA #eDNA #environmentalDNA ecology.peercommunityin.org/articles/rec...
ecology.peercommunityin.org
Accounting for false positives and negatives in monitoring data ...
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Pl@ntNet plant identification app @plantnet.bsky.social · 05/02/2025
🤖Want to know more about how Pl@ntNet makes AI and humans work hand in hand to better identify plants? You're in luck, we recently published on the @britishecolsoc.bsky.social, find out more about it here! plantnet.org/en/2025/02/0...
plantnet.org
Pl@ntNet: un modèle collaboratif pour une IA plus précise dans l’identification des espèces végétales
Dans un article récemment publié dans le journal de la British Ecological Society, l’équipe Pl@ntNet, s’appuyant notamment sur le travail de thèse de Tanguy Lefort, propose une avancée significative d...
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Nature Microbiology @natmicrobiol.nature.com · 04/02/2025
REVIEW: Design and regulation of engineered bacteria for environmental release by Chris Voigt & co #microsky www.nature.com/articles/s41...
nature.com
Design and regulation of engineered bacteria for environmental release - Nature Microbiology
Chemla et al. review the release of bacteria into the environment and propose engineering strategies to help improve performance and reduce risk.
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Lydia Messling @lydiamessling.bsky.social · 03/02/2025
📣NEW PAPER: ‘Advocacy - defending science or destroying it?’ Our interviews with 47 climate scientists provide detailed explanations on all the good things about policy advocacy and the legitimate concerns with threats to the integrity and credibility of science. journals.sagepub.com/doi/10.1177/...
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Joachim Claudet @joachimclaudet.bsky.social · 30/01/2025
For open communication, give researchers a permanent e-mail alias www.nature.com/articles/d41...
nature.com
For open communication, give researchers a permanent e-mail alias
Letter to the Editor
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BM vReumont @reumont.bsky.social · 28/01/2025
Interested in interactions between managed #honeybee & #wild #bees using #eDNA methods in a multidisciplinary consortium #Beenergia? Then apply for a postdoc in the Natural History Museum here in #Karlsruhe for environmental DNA (eDNA) research on bees! summ summ... www.smnk.de/museum/aussc...
smnk.de
Beenergia Postdoc (m/w/d)
Staatliches Museum für Naturkunde Karlsruhe
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Leho Tedersoo @tedersoo.bsky.social · 23/01/2025
EUKARYOME v1.9.3 now available in eukaryome.org A special release of long reads of marine microeukaryotes
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AquaEcOmics @aquaecomics.mastodon.social.ap.brid.gy · 21/01/2025
The preliminary program for the AquaEcOmics symposium is now available: aquaecomics.symposium.inrae.fr/prog… #eDNA #omics #metagenomics #metabarcoding #dPCR #marine #freshwater #ecology #biomonitoring #aquaecomics2025 Make sure not to miss out […] [Original post on mastodon.social]
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Laura Dee @lauradee.bsky.social · 20/01/2025
Very excited this paper is now out in Ecology Letters onlinelibrary.wiley.com/doi/epdf/10.... #causalsky
onlinelibrary.wiley.com
Foundations and Future Directions for Causal Inference in Ecological Research
You have to enable JavaScript in your browser's settings in order to use the eReader.
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Académie des sciences @academiesciences.bsky.social · 13/01/2025
Tatiana Giraud a un message pour vous ! Rejoignez-nous le 4 février prochain sous la Coupole de l'Institut de France pour réfléchir sur l'effondrement de la biodiversité, et ses conséquences pour l'humanité. 🌍 Venez nombreux échanger avec des experts du sujet ! youtu.be/TbEI_PnhrO0?...
youtu.be
[TEASER] Les Clés pour comprendre - L'effondrement de la biodiversité met-il l'humanité en danger ?
YouTube video by Académie des sciences
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Meredith Martin @mmvty.bsky.social · 09/12/2024
“People don’t want to be in a workplace if they feel disrespected, if they feel like their work isn’t valued, if they feel like they’re not seen,” she notes. “And I do think that in many, many academic workplaces, that is the experience that women have.” So! Much! This!
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Flavia Montano-Centellas @flamontano.bsky.social · 05/12/2024
Small grants from Graduate Women International, for women already enrolled in a PhD, to aid research in science. Deadline in January! graduatewomen.org/what-we-do/g...
graduatewomen.org
Fellowships & Grants - Graduate Women International (GWI)
Fellowships & Grants   Hegg Hoffet Fund For Displaced Women Graduates International Awards   National Awards   Fellowships & Grants Archive
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Journal of Ecology @journalofecology.bsky.social · 04/12/2024
📚December issue alert! Check out the🧵for highlights👇 besjournals.onlinelibrary.wiley.com/toc/13652745...
besjournals.onlinelibrary.wiley.com
Journal of Ecology: Vol 112, No 12
<em>Journal of Ecology</em> publishes original research on all aspects of the plant ecology (including algae), in both aquatic and terrestrial ecosystems.
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Loïc Pellissier @loicpellissier.bsky.social · 02/12/2024
Tired of NMDS and other ordinations methods to represent your #eDNA metabarcoding data, consider using this approach: besjournals.onlinelibrary.wiley.com/doi/full/10....
besjournals.onlinelibrary.wiley.com
A spatial matrix factorization method to characterize ecological assemblages as a mixture of unobserved sources: An application to fish eDNA surveys
Understanding how ecological assemblages vary in space and time is essential for advancing our knowledge of biodiversity dynamics and ecosystem functioning. Metabarcoding of environmental DNA (eDN...
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Ocean Biomolecular Observing Network (OBON) @obon-ocean.bsky.social · 03/12/2024
***Help Us Enhance Training in Biomolecular and eDNA Research!*** The OBON Capacity Development Working Group is committed to supporting the professional growth of researchers in the field of marine biomolecular and #eDNA research. Take the survey: mailchi.mp/1e52091cfd81...
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Physalia-courses@ONLINE @physaliacourses.bsky.social · 28/11/2024
📢 As part of the #AquaEcomics Symposium, we're offering a 1-day course on #eDNA #metabarcoding with @nanoporetech.com Sequencing Technology with @shump.bsky.social on March 21st. 🧬🌊 Seats are limited—reserve yours today! 🔗 www.physalia-courses.org/courses-work...
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Franciska de Vries 🟥 @frantecol.bsky.social · 27/11/2024
It’s out!! We subjected soils from 30 different locations across Europe to extreme events and found that soil fungal and bacterial communities showed consistent responses that could be predicted from their origin! With @knightjar.bsky.social and many collaborators! www.nature.com/articles/s41...
nature.com
Soil microbiomes show consistent and predictable responses to extreme events - Nature
Soils from 30 grasslands across Europe were subjected to 4 contrasting extreme climatic events under drought, flood, freezing and heat conditions, with the results suggesting that soil microbiomes fro...
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Frank Ashwood @frankashwood.bsky.social · 20/11/2024
Last weekend I got to see NZ velvet worms in their native forest habitat. These animals are so bizarre, taxonomists gave them their very own Phylum, next to tardigrades - that's insane! This Ooperipatellus sp. is an egg-laying genus, but there's another here that gives live birth! Mind. Blown. 🧪
A photograph of the head end of a velvet worm, a soft-bodied invertebrate covered in beautiful orange and blue patterns.
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Prof. Elizabeth Clare @profbatgirl.bsky.social · 19/11/2024
To reach new users if you have an interest in #eDNA #environmentalDNA as a scientist or user, please consider completing our survey. We are engaged in funded research on community perspectives on eDNA, ethics, risk and potential forms.office.com/r/P6R57BAbZq #academicSkY #womenInSTEM 🧪
forms.office.com
Microsoft Forms
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Marine eDNA Dude @marinednadude.bsky.social · 18/11/2024
Curious about #eDNA and how it can best be used for Monitoring Marine Ecosystems? Want to know more about eDNA? 🧪🧬🤿🚨 #Science Check out this great webinar from @eDNAcollab.bsky.social & @oceandecadenep.bsky.social oceandecadenortheastpacific.org/events/mobil...
oceandecadenortheastpacific.org
Mobilizing eDNA for Management in the Northeast Pacific
This event will be co-hosted by the eDNA Collaborative and the Ocean Decade Collaborative Center for the Northeast Pacific, and is being planned in partnership with representatives from the Hakai Inst...
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Philipp Bayer @philippbayer.bsky.social · 18/11/2024
The program for #eDNA2025 is online. See you in NZ in February for the 2nd #eDNA conference! ednaconference.com.au/program
ednaconference.com.au
Program – eDNA Conference
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