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François-Xavier Joly

@fxjoly.bsky.social
1.7K followers 968 following 29 posts

Soil ecologist at INRAE @inrae-france.bsky.social. Invertebrologist. Collects soil invertebrates and their poo for a living.

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Reposted by François-Xavier Joly
Fabien Ferchaud @fabien-ferchaud.bsky.social · 04/05/2026
📣 Just out in @commsearth.nature.com Our paper explores the role of tillage in agroecological systems, discussing the trade-offs between carbon, climate and pest management. We recommend moving beyond the simplistic view of 'tillage bad, no-till good'. Open access ➡️ doi.org/10.1038/s432...
doi.org
Rethinking tillage as a strategic practice in agroecological farming systems with carbon, climate, and pest management trade-offs - Communications Earth & Environment
Tillage can provide key ecosystem services for non-chemical management of cover crops and weeds, pests, and soilborne pathogens, without undermining soil organic carbon stocks or greenhouse gas emissi...
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François-Xavier Joly @fxjoly.bsky.social · 09/04/2026
📣 Fully-funded PhD position at INRAE, within the Eco&Sols unit in Montpellier, France: General principles of detritivore faeces production in temperate ecosystems 📄Full description --> www.dropbox.com/scl/fi/fr028... Please get in touch to apply, or share in your network!
Image of soil detritivores and their faeces, and details of the PhD: 

General principles of detritivore faeces production in temperate ecosystems

Dr. François-Xavier Joly, UMR Eco&Sols, Montpellier, France Dr. Benjamin Pey, UMR CRBE, Toulouse, Montpellier

3-year fully-funded PhD position
Starting Oct. 2026
INRAE
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François-Xavier Joly @fxjoly.bsky.social · 09/04/2026
📣 Fully-funded PhD position at INRAE, within the Eco&Sols unit in Montpellier, France: General principles of detritivore faeces production in temperate ecosystems 📄Full description --> www.dropbox.com/scl/fi/fr028... Please get in touch to apply, or share in your network!
Image of soil detritivores and their faeces, and details of the PhD: 

General principles of detritivore faeces production in temperate ecosystems

Dr. François-Xavier Joly, UMR Eco&Sols, Montpellier, France Dr. Benjamin Pey, UMR CRBE, Toulouse, Montpellier

3-year fully-funded PhD position
Starting Oct. 2026
INRAE
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Reposted by François-Xavier Joly
CuttleDreams @cuttledreams.bsky.social · 01/04/2026
Shout-out to the homies ✨✨
A drawing of a centipede, two millipedes, and three isopods surrounded in sparkles. They share the colors of the trans, bigender and genderfluid flags.
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Joannès Guillemot @joguillemot.bsky.social · 08/01/2026
New paper out! 🎉 Led by Jenickson Costa @uspoficial.bsky.social @cirad.bsky.social @jenicksoncosta.bsky.social Forest Ecosystem Multifunctionality: A Systematic Review of Measures and Drivers 🌳🌲 link.springer.com/article/10.1...
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François-Xavier Joly @fxjoly.bsky.social · 23/09/2025
📄 New paper out in @journalofecology.bsky.social ...where we show an unexpectedly high variation in litter decomposition rates within a 9-ha forest, despite keeping macroclimate, vegetation and litter quality constant! 🍃🍂🦠🪱🌲 besjournals.onlinelibrary.wiley.com/doi/10.1111/...
besjournals.onlinelibrary.wiley.com
Microenvironmental variability differently predicts microorganism‐ and fauna‐driven litter decomposition
Our study focused on local-scale variation in litter decomposition using a spatially explicit and untargeted network of 113 plots across a 9-ha Chinese fir forest. Interestingly, we found variation i....
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Ashish Malik @ashish-malik.bsky.social · 16/09/2025
📢 Funded PhD opportunities for UK candidates in beautiful Edinburgh. Get in touch if you're interested in a PhD on understanding the mechanisms of soil carbon cycling and the role of microbes. We work in different ecosystems: peatlands, forests and agricultural soils. Please repost/spread the word.
Poster showing the following text: PhD in microbial mechanisms of soil carbon cycling. Soil microbes shape the global carbon cycle in life and death. We study the effect of aboveground land management on belowground soil carbon cycling processes. We aim create a scalable understanding of microbial processes from single cells to populations to communities to ecosystems. Pictures with text: peatland restoration, sustainable agriculture and woodland regeneration.
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François-Xavier Joly @fxjoly.bsky.social · 23/09/2025
📄 New paper out in @journalofecology.bsky.social ...where we show an unexpectedly high variation in litter decomposition rates within a 9-ha forest, despite keeping macroclimate, vegetation and litter quality constant! 🍃🍂🦠🪱🌲 besjournals.onlinelibrary.wiley.com/doi/10.1111/...
besjournals.onlinelibrary.wiley.com
Microenvironmental variability differently predicts microorganism‐ and fauna‐driven litter decomposition
Our study focused on local-scale variation in litter decomposition using a spatially explicit and untargeted network of 113 plots across a 9-ha Chinese fir forest. Interestingly, we found variation i....
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Reposted by François-Xavier Joly
Rémy Beugnon @remybeugnon.bsky.social · 09/07/2025
🌳 One of my dearest projects—with brilliant friends and colleagues—is out in @NatureComms We show that how you plant tree species (not just which) can significantly boost forest functioning. 🔗 rdcu.be/evtXs 👇 A short thread
rdcu.be
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Fabien Ferchaud @fabien-ferchaud.bsky.social · 27/03/2025
Hi Bluesky! I'm Fabien, I'm an agronomist and soil scientist at INRAE. My current research digs into the impacts of agricultural systems on soil carbon storage. I like combining experimental and modelling approaches. Here, I'll mainly share news on my research. More info ⬇️ orcid.org/0000-0002-20...
orcid.org
ORCID
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Rémy Beugnon @remybeugnon.bsky.social · 23/03/2025
🌴🌳 Tree species richness increases climate buffering 🌡️🥵 I am so happy to share our latest piece, now published in Ecology Letters! onlinelibrary.wiley.com/doi/full/10....
onlinelibrary.wiley.com
Tree Diversity Increases Forest Temperature Buffering via Enhancing Canopy Density and Structural Diversity
Making use of 6 years of microclimate measurements in a large-scale tree diversity experiment covering a species richness gradient ranging from 1 to 24 tree species, we demonstrate that tree species ...
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Mark A. Anthony @anthomycota.bsky.social · 18/03/2025
Lower survival rate among trainees in labs with highly productive mentors raises important concerns about what we value in academia. Many interesting things to stew over with this paper! www.nature.com/articles/s41...
nature.com
Academic mentees thrive in big groups, but survive in small groups - Nature Human Behaviour
Using longitudinal genealogical data on mentor–mentee relations and their publications, the authors find that mentees trained in larger groups tend to exhibit superior academic performance compared wi...
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François-Xavier Joly @fxjoly.bsky.social · 17/03/2025
📣 Our paper on the effect of microplastics on decomposition is out in Applied Soil Ecology: "No short-term response of microbial or isopod-driven litter decomposition to microplastics". ​ ⚠️ Spoiler: We do not report any significant effect, and yes it matters. www.sciencedirect.com/science/arti...
sciencedirect.com
No short-term response of microbial or isopod-driven litter decomposition to microplastics
Microplastic pollution is a growing threat to soils, but its effects on plant litter decomposition remains poorly understood. Particularly, it is uncl…
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Gabin Piton @gabin-piton.bsky.social · 12/03/2025
New paper in diamond open-access @peercomjournal.bsky.social Reducing mineral fertilizer use in mountain grasslands could improve the ability of their soil to maintain their multifunctionality during drought. Last chapter of my PhD 5 y latter. #NewPI never give up publish your science! #Soilscience
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Kryštof Chytrý @krystofchytry.bsky.social · 14/03/2025
Hi there, my student is making a survey about the use of R packages in Ecology, could you please spend two mins on filling it 🥹 Very appreciated! And if you could spread it further (RT), that would be just awesome. ❤️ docs.google.com/forms/d/e/1F...
docs.google.com
Exploring R Package Usage in Academia
I am running a quick survey to find out which R packages academics use the most in their research and teaching. The goal is to see which tools are essential, spot any gaps, and maybe even discover som...
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François-Xavier Joly @fxjoly.bsky.social · 17/03/2025
📣 Our paper on the effect of microplastics on decomposition is out in Applied Soil Ecology: "No short-term response of microbial or isopod-driven litter decomposition to microplastics". ​ ⚠️ Spoiler: We do not report any significant effect, and yes it matters. www.sciencedirect.com/science/arti...
sciencedirect.com
No short-term response of microbial or isopod-driven litter decomposition to microplastics
Microplastic pollution is a growing threat to soils, but its effects on plant litter decomposition remains poorly understood. Particularly, it is uncl…
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Reposted by François-Xavier Joly
Louis Mielke @myconet.bsky.social · 13/03/2025
Can you see the forest for the fungi? Check out our new research examining this in depth in Conservation Biology 💫 conbio.onlinelibrary.wiley.com/journal/1523...
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Frank Ashwood @frankashwood.bsky.social · 08/03/2025
This gorgeous creature is the prickly stick insect (Acanthoxyla prasina), one of New Zealand's 23 species of stick insect. Huge thanks to @morganemerien.bsky.social for pointing this out on a recent University of Canterbury field trip - it's great fun teaching entomology! #Invertebrate 🧪
A photograph of a brown stick insect standing on a tree stump, with its head and front legs raised in the air.A photograph of the head of a brown stick insect, with its black and yellow patterned compound eyes in focus.
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François-Xavier Joly @fxjoly.bsky.social · 25/02/2025
Dear colleagues, If you use "Greetings of the day!", "distinguished speaker", or "your valuable submission" in your emails, my new bespoke spam filter will mark is as read and delete it. Works like a charm for now. I eagerly await for your valuable spam-filtering term suggestions. 🙏⤵️
An example of spam email from dubious journals inviting me to submit a manuscript to their journal (for a fee of course).
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Frank Ashwood @frankashwood.bsky.social · 24/02/2025
Introducing New Zealand's latest Bug of the Year- the magnificent Ngāokeoke / Velvet Worm! NZ has two genera: one lays eggs (Ooperipatellus, 1st photo) and another gives live birth (Peripatoides, 2nd). They also deposit sperm which burrow through their partner's skin, but that's another story! 🧪
A photograph of a velvet worm - an orange and purple-patterned invertebrate composed of many soft segments and tiny spined legs. The velvet worm has long, segmented antenna and a pair of organs on its head which squirt glue for prey capture.A photograph of a velvet worm - an Blue and yellow-patterned invertebrate composed of many soft segments and tiny spined legs. The velvet worm has long, segmented antenna and a pair of organs on its head which squirt glue for prey capture.
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UMR Eco&Sols lab @umr-ecosols.bsky.social · 20/02/2025
Notre unité a mis au point des scanners enterrés pour étudier la dynamique racinaire puis plus largement les interactions biologiques dans le sol. La chaine "écran de savoir" des universités de l’Occitanie-Est, présente en vidéo cette innovation technologique : www.youtube.com/watch?v=GgDe...
youtube.com
Il a détourné un scanner de bureau pour ça ! Ep.6 Christophe Jourdan
YouTube video by Écran de savoirs
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Frank Ashwood @frankashwood.bsky.social · 20/02/2025
We're all on tenterhooks waiting for the results to be announced tomorrow for the NZ Bug of the Year competition! Here's a few of my favourite contenders. Now voting is over I'll admit I have been quietly rooting for the velvet worm too - they're amazing animals! Good luck #TeamGiantSpringtail!
A photograph of a giant springtail on a decaying log. The springtail has soft blue skin, and is covered in soft, pointy yellow spines.A photograph of a velvet worm on a decaying log. The velvet worm has many legs, soft blue skin, and is covered in beautiful orange dots scattered randomly over its body.A photograph of a pair of leaf-veined slugs on a decaying log. One is orange and the other is green, and both have a leaf vein-like branching depression running down the midline of their bodies, giving them a leaf-like appearance.A photograph of a manuka chafer beetle walking on a bright yellow sheet. The beetle is beautifully iridescent green with orange-brown legs.
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Itai Yanai @itaiyanai.bsky.social · 11/02/2025
Science is under threat
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Franciska de Vries 🟥 @frantecol.bsky.social · 11/02/2025
On #InternationalDayofWomenandGirlsinScience let me remind you that we are NOWHERE NEAR parity. A few examples. 1. Women are credited less in science than men. www.nature.com/articles/s41...
nature.com
Women are credited less in science than men - Nature
The difference between the number of men and women listed as authors on scientific papers and inventors on patents is at least partly attributable to unacknowledged contributions by women scientists.
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Michael Bertram @michaelgbertram.bsky.social · 06/02/2025
The first many-analysts study in ecology is finally published! 🥳🙌 300+ coauthors and 5+ years, this was a massive effort by @elliotgould.bsky.social Hannah Fraser Tim Parker and co. Open access 👉 bmcbiol.biomedcentral.com/articles/10....
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European Research Council (ERC) @erc.europa.eu · 07/02/2025
Hello, Bluesky! ☀️ We fund frontier research in Europe—bold ideas, unexpected discoveries and science that shapes the future. So it’s only fitting we’ve landed here. Sorry for being late. Follow us for updates on ERC funding, research policy, and our grantees' discoveries.
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Matt Bertone @bertonemyia.bsky.social · 06/02/2025
Beauty & the Feces. groundselbush #beetle #larva #Chrysomelidae #Trirhabda bacharidis (Raleigh, NC, USA)
A caterpillar-like leaf beetle larva rests on a leaf of Baccharis. It is iridescent like an oil slick and excreting a wet fecal pellet.
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UMR Eco&Sols lab @umr-ecosols.bsky.social · 30/01/2025
Tough but essential debate for our labs. Aude Valade from our unit and Tamara Ben Ari, call for a convention on the environmental ethics of research: How do we decide what research to continue? What criteria to evaluate energy-consuming research? How can we distribute reductions? Paper in French 🇫🇷
lemonde.fr
« Nous appelons à l’organisation d’une convention nationale de l’éthique environnementale de la recherche »
TRIBUNE. Tamara Ben Ari et Aude Valade, chercheuses en écologie et agronomie, estiment que les initiatives existantes ne suffisent pas pour dessiner une recherche éthique, alignée avec les impératifs ...
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UMR Eco&Sols lab @umr-ecosols.bsky.social · 28/01/2025
Eco&Sols has now moved to bluesky! Our research unit works on functional ecology and biogeochemistry in agroecosystems, from the biodiversity in soil aggregates, to plant-soil interactions and global C cycle. This account will share publications, project updates, job opportunities and more.
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Gabin Piton @gabin-piton.bsky.social · 28/01/2025
Hi bluesky! I will only share news on my research here. My main topics are microbial ecology and biogeochemistry. My current research digs into the functioning of root-soil system in deep horizons of agroforestry systems and the global life history strategies of soil bacteria. Recent publications 👇
nature.com
Life history strategies of soil bacterial communities across global terrestrial biomes - Nature Microbiology
Analysis of metagenomes from across the globe reveals the spectrum of soil microbial functional diversity based on community aggregated traits.
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Mark A. Anthony @anthomycota.bsky.social · 28/01/2025
Interesting new paper on inference with observational data in ecology onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Causal Inference With Observational Data and Unobserved Confounding Variables
As ecology tackles progressively larger problems, we are moving beyond the scales at which randomised controlled experiments are feasible. Using observational data for causal inference raises the pro...
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Jules Segrestin @jsegrestin.bsky.social · 20/01/2025
What a great demonstration of the importance of permanent grasslands for soil carbon sequestration!
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François-Xavier Joly @fxjoly.bsky.social · 20/01/2025
📣 Our paper on soil carbon response to tree planting is out in J. of Env. Management: 🌲 Temperate grassland conversion to conifer forest destabilises mineral soil carbon stocks Open access ➡️ tinyurl.com/3krerb92 A short thread ⤵️
Conceptual diagram representing hypothesised mechanisms leading to observed differences in SOM pools between grasslands and coniferous forests. Differences in flux sizes are represented by varying arrow widths. Differences in the size of functionally distinct litter and SOM pools are represented by varying icon numbers.
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Markus Eichhorn @markuseichhorn.bsky.social · 09/01/2025
It's finally happened. I've been saying for years that when lynx returned to the British Isles it would be illegally at first. www.theguardian.com/uk-news/2025...
theguardian.com
Two lynx on the loose in the Scottish Highlands
Cairngorms National Park Authority (CNPA) says the animals were at large within its grounds after a suspected ‘illegal release’
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Xavier Morin @xaviermorin.bsky.social · 06/01/2025
New paper out! 🌳 🌲 (and this one is very special to me) ➡️ Diversity boosts forest productivity also (and especially?) through its effect on the number of trees within forests besjournals.onlinelibrary.wiley.com/doi/10.1111/... @journalofecology.bsky.social @cnrsoccitanieest.bsky.social More ⬇️ 1/7
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Emily Lines @emilyrlines.bsky.social · 19/12/2024
Big name in climate/ecology leaving ETH Zurich after allegations: www.tagesanzeiger.ch/klimaforsche... and www.tagesanzeiger.ch/eth-hochschu... (in german)
tagesanzeiger.ch
Weltbekannter Klimaforscher muss die ETH Zürich nach Vorwürfen verlassen
Gegen den Professor haben acht Personen Vorwürfe erhoben. Er bestreitet jedes Fehlverhalten. Nach Berichten dieser Redaktion ordnete die ETH eine Untersuchung an und handelt nun.
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Thomas Cornulier @tcornulier.bsky.social · 18/12/2024
No later than last week, colleagues and I were asking how effectively do some "biodegradable" materials actually degrade. Useful answers, albeit not what we'd hope.
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Rémy Beugnon @remybeugnon.bsky.social · 17/12/2024
*Ten practical guidelines for microclimate research in terrestrial ecosystems* I am so glad to share our latest paper in @methodsinecoevol.bsky.social led by @pieterdefrenne.bsky.social and the @mebnetwork.bsky.social. besjournals.onlinelibrary.wiley.com/doi/10.1111/...
besjournals.onlinelibrary.wiley.com
Ten practical guidelines for microclimate research in terrestrial ecosystems
Most biodiversity dynamics and ecosystem processes on land take place in microclimates that are decoupled from the climate as measured by standardised weather stations in open, unshaded locations....
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Paul Kardol @paulkardol.bsky.social · 13/12/2024
Curious how forest microclimate and soil microbes drive carbon cycling in a changing climate? 🌡️🌳🍄We're offering a 4-year PhD position at @mycopat.bsky.social, SLU-Uppsala. A cool new project in collaboration with @linegreis.bsky.social Apply now or help spread the word! www.slu.se/en/about-slu...
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Frank Ashwood @frankashwood.bsky.social · 11/12/2024
Slime molds may resemble fungi, but are in fact a distinct group of unrelated organisms. Although they're single-celled organisms, they'll also perform an astonishing feat of cooperation - gathering together as a collective ‘organism’ to form amazing fruiting bodies. Which is your favourite? 🧪🍄
A photograph of a collection of elongated lollipop-shaped brown fruiting bodies of slime mold on a dead log surface.A photograph of a pair of balloon/lollipop-shaped white fruiting bodies of slime mold on a dead log surface.A photograph of a collection of balloon/lollipop-shaped black fruiting bodies of slime mold on a dead log surface.A photograph of a single balloon/lollipop-shaped orange fruiting body of slime mold on a dead log surface.
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Jens-Arne Subke @jasubke.bsky.social · 09/12/2024
Still time to apply for a PhD investigating soil carbon outcomes of agroforestry. With me, Yit Arn Teh (Newcastle, bsky.app/profile/newc...) and Stuart Smith (JHI, bsky.app/profile/hutt...). Deadline is 3rd of January, but get in touch sooner! More here: iapetus2.ac.uk/studentships...
Forestry blocks on former pasture Steps of forestry with grassland in foreground New plantation of forestry and pasture on upland soil
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Wolfgang Cramer @cramer-bondeau.fr · 01/12/2024
Starting a #CrossBorderRail adventure across the Iberian peninsula. As always, my intention is to show that rail travel in Europe is possible, over large distances - and where things could be improved. However, starting my trip from the #Diois to Aix-en-Provence, was already slightly complex... 1/
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Alan Law @dralanlaw.bsky.social · 27/11/2024
Nice to have some hill time. There’s something special about winter light. Beinn an Dòthaidh and Beinn Dòrain #Munros #ScotWinter
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Carsten W. Müller @cwmsoils.bsky.social · 28/11/2024
New Perspective: Tree planting is no climate solution at northern high latitudes - led by Jeppe Aagaard Kristensen @jeep4x4.bsky.social of @aarhusuni.bsky.social #soilcarbonstorage #climatecrisis #Arctic #naturebasedsolutions #herbivory #Permafrost www.nature.com/articles/s41...
nature.com
Tree planting is no climate solution at northern high latitudes - Nature Geoscience
Planting trees in high-latitude regions can be counterproductive to climate change mitigation, according to a synthesis of the biophysical and ecological impacts of planting trees.
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Marc Buée 🇨🇵 🇪🇺 🇺🇦 @mrmbuee.bsky.social · 23/11/2024
Compared to EM trees, AM trees may be better adapted to thrive under the effects of global warming. doi.org/10.1111/gcb.... Chari et al. November 2024 In Global Change Biology
doi.org
Long‐Term Soil Warming Drives Different Belowground Responses in Arbuscular Mycorrhizal and Ectomycorrhizal Trees
Using a 20-year-long soil warming experiment, we found that the belowground responses of temperate forest trees to warming varied depending on tree mycorrhizal type. Specifically, trees associating w...
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Jens-Christian Svenning @jcsvenning.bsky.social · 22/11/2024
Recent study estimates large global potential for natural regeneration in deforested tropical regions & substantial associated #climatechange #mitigation effects www.nature.com/articles/s41... 🌳🌿🌴🍃 #reforestation #naturalprocesses #trees #tropics #forests
nature.com
Global potential for natural regeneration in deforested tropical regions - Nature
An estimated area of 215 million hectares has the potential for natural forest regeneration across tropical forested countries and biomes, representing an above-ground carbon sequestration potential o...
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Frank Ashwood @frankashwood.bsky.social · 21/11/2024
More velvet worms! Unlike the previous post, this species (Peripatoides) gives live birth. BUT it gets weirder than that... During mating, males deposit sperm packages anywhere onto the female, which then DISSOLVE HOLES in her skin and travel throughout her body! And they say romance is dead. 🧪
A photograph of a blue velvet worm, a soft-bodied invertebrate covered in beautiful orange spots.
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Josh @joshecology.bsky.social · 18/11/2024
Some people might say I am obsessed with harvestmen. But I don't know what they're talking about. Dicranopalpus ramosus Platybunus pinetorum Nemastoma bimaculatum Megabunus diadema #opiliones #ouropiliones #harvestmen #irishwildlife #wildlifephotography #irishbiodiversity
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François-Xavier Joly @fxjoly.bsky.social · 18/11/2024
To people referring to soil invertebrates as 'insects', I have a visual for you. You could say this really bugs me. 🧪
Visual representing the diversity of soil organisms that can be considered as invertebrates (a lot), arthropods (a bit less), and insects (a lot less).
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Michael ヘビ Steinwandter @msteinwandter.eurosky.social · 15/11/2024
Dear soil biodiversity enthusiasts: Welcome here (again)! Let's meet, let's talk, let's dig deep 🪱🪲🕷️🦠🧫 (The list is expandable, so please let me know of new people to add!) go.bsky.app/K2ZUfHY #SoilBiology #SoilBiodiversity #SoilIsLife #SoilIsAlive #SoilScience #SoilOrganisms
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