iiinova — where your digital self keeps evolving

Luke Campillo @lcampillo.bsky.social · 15/01/2025

Can you run sequential slurm arrays with one job submission? E.g., make bam files for all inds, then make individual VCFs when bam step is complete. I currently do this with separate job submissions, but would like to combine into one job submission. Thanks! #bioinformatics

542

Reposted by Luke Campillo

Joanna Masel @joannamasel.bsky.social · 19/12/2024

Phylogenetics methods announcement: piqtree is out! It exposes selected IQ-TREE2 capabilities within Python, using the cogent3 library as the interface, better enabling pipelines. piqtree is an addition to, not a replacement of, IQ-TREE2. Full announcement at github.com/iqtree/piqtr...

github.com

piqtree: IQ-TREE2 meets Python via cogent3 · iqtree piqtree · Discussion #145

The developers of IQ-TREE2 and cogent3 have joined forces to bring the power of IQ-TREE2 to Python users as piqtree. piqtree exposes selected IQ-TREE2 capabilities within Python, using the cogent3 ...

03312

Reposted by Luke Campillo

Richard McElreath 🐈‍⬛ @rmcelreath.bsky.social · 19/09/2024

If you hate statistics like I do, then you'll love my free lectures. Putting science before statistics, 20 lectures from basics of inference & causal modeling to multilevel models & dynamic state space models. It's all free, made with love and sympathy. 🧪 #stats www.youtube.com/playlist?lis...

29852229

Reposted by Luke Campillo

Robert Reich @rbreich.bsky.social · 17/12/2024

Trump says he's wants to privatize USPS because it's "unprofitable". Reminder that the Post Office isn't a for-profit enterprise: it's a public service that guarantees everyone in America reliable, affordable, and universal mail service.

37741831190

Luke Campillo @lcampillo.bsky.social · 16/12/2024

Gahhhhhhh!!! ☺️🥳🤩 This is an exciting start to the week 😎

020

Luke Campillo @lcampillo.bsky.social · 13/12/2024

People: don’t you just get a job when you’re a doctor…? You can just be a professor, right? Me: 👇🏼

040

Reposted by Luke Campillo

Alex Holt @alexjholt.bsky.social · 07/12/2024

Whoop whoop back to 1000 followers, so you know what I haven't done in ages? ART GIVEAWAY! If you follow me and reskeet this post and at 5pm next I'll do either a creature illustration or a character bust of your choice! *Note: Bot, AI, NFT, scraper etc accounts will disqualified disqualified

A black and white painting on a bright red background of the Finger Blasters - the protagonists of Science and Sorceries' Witness to Ruin campiagn. Muck in an angry half orc swinging a sword over her head. Blirta is a small balf elf with vaguely pubk clothing, firing an energy beam from her left eye. Nimbo is a tall firbolg wearing scalemail with lightning crackling from his extended hand. Em is an Uncina - a snow leopard person - firing magic missiles from a wand grasped in their tail.

11013

Reposted by Luke Campillo

Erica Larson @ellarson.bsky.social · 20/11/2024

We have a postdoc position available in the lab on post-copulatory barriers in hybridizing crickets. We have genomic data ready to be analyzed and crickets ready for experiments. This is a great collaborative group and a study system with a lot of potential for new projects. Join us!

04854

Reposted by Luke Campillo

Shelly Gaynor @shellygaynor.bsky.social · 04/12/2024

After lots of delay - we just updated the MIT living wage in our stipend database and we are back to only two points above the line! See more: rhettrautsaw.app/shiny/Biolog... #PhDStipend #Biology @reptilerhett.bsky.social

Annual salary vs MIT living wage, only two points fall above the 1:1 line and pay a living wage.

05129

Reposted by Luke Campillo

Kevin Bird @stairwaytokevin.bsky.social · 29/11/2024

How much more can he take from us

5212

Reposted by Luke Campillo

Bill Cresko @wcresko.bsky.social · 25/11/2024

Tapping the wisdom of the SkyMind. I’ve previously developed educational programs in genomics and bioinformatics at the graduate level, as well as undergrad data science program, and now building a broad PhD program in biomed/biological/bioengineering data science. #science #evolution #genomics 1/1

42313

Luke Campillo @lcampillo.bsky.social · 20/11/2024

This is an amazing resource for students, teachers, and researchers alike! Thanks for all your hard work creating and maintaining this, Graham 😎😊🤩 #popgen

040

Luke Campillo @lcampillo.bsky.social · 19/11/2024

I had been off all social media for months, but since humanity is imploding at an ever increasing rate and I’ve heard we’re all gathering here to mourn its demise… I’m back, baby!✌🏼

010

Luke Campillo @lcampillo.bsky.social · 25/04/2024

I think if a conference presentation abstract gets accepted as a poster (i.e., not a talk), you should get a $50 gift card to cover printing costs… 🧪 ps: I think giving posters is ultimately more fun and results in more interaction, but they’re still a pain to design and get printed

2152

Luke Campillo @lcampillo.bsky.social · 08/04/2024

Eclipse [yada yada] totality [blah blah] 🤩

000

Luke Campillo @lcampillo.bsky.social · 06/04/2024

Does this place care about real trucks? Or was that only in the other place, the “cyber truck” place…?

120

Reposted by Luke Campillo

Kinsey Brock @doc-brock.bsky.social · 29/03/2024

Italian wall lizard (Podarcis siculus) Just seven of these were introduced to a backyard in LA in 1994 - now there hundreds of thousands spreading across the city. This 🦎 has also been introduced to San Diego, Topeka, Victoria, and the Bronx. If you see one of these in North America, let me know!

An introduced Italian wall lizard sunning itself on a wall in Los Angeles. 🇮🇹🦎

0144

Reposted by Luke Campillo

Luke Campillo @lcampillo.bsky.social · 20/03/2024

What in the fresh hell?! Seen on Reddit, with the headline: “Explore Passion and Stars in The Adventures of Rosalind Franklin: A 3D Sci-Fi Adult Visual Novel” 🧪📓🤷🏻‍♂️

Title page saying “The Adventures of Rosalind Franklin”

An intentionally seductive looking space explorer called “female main character” who I can only assume is supposed to be famed scientist Rosalind Franklin….? I’m so confused

131

Luke Campillo @lcampillo.bsky.social · 20/03/2024

What in the fresh hell?! Seen on Reddit, with the headline: “Explore Passion and Stars in The Adventures of Rosalind Franklin: A 3D Sci-Fi Adult Visual Novel” 🧪📓🤷🏻‍♂️

131

Luke Campillo @lcampillo.bsky.social · 18/03/2024

Amazing scenery above the clouds on my flight from Hilo to Honolulu over the weekend 🤩📸🌅

Picture taken above the clouds through an airplane window, with the Big Island of Hawaii poking thru the clouds, meaning we must be at least 13K feet in the air based on the elevation of the mountains. Setting sun colors the clouds with deep blues and purples, while turning the sky multiple shades of orange.

040

Luke Campillo @lcampillo.bsky.social · 18/03/2024

As previously stated, you can’t stop worm!

A big electric generator with a “WORM!” tag on it

120

Reposted by Luke Campillo

Carl T. Bergstrom @carlbergstrom.com · 15/03/2024

Another Elsevier paper with obvious AI-written text. “In summary, the management of bilateral iatrogenic I'm very sorry, but I don't have access to real-time information or patient-specific data, as I am an AI language model. “

Radiology Case Reports
Volume 19, Issue 6, June 2024, Pages 2106-2111
Case Report
Successful management of an Iatrogenic portal vein and hepatic artery injury in a 4-month-old female patient: A case report and literature review

In summary, the management of bilateral iatrogenic I'm very sorry, but I don't have access to real-time information or patient-specific data, as I am an AI language model. I can provide general information about managing hepatic artery, portal vein, and bile duct injuries, but for specific cases, it is essential to consult with a medical professional who has access to the patient's medical records and can provide personalized advice. It is recommended to discuss the case with a hepatobiliary surgeon or a multidisciplinary team experienced in managing complex liver injuries.

962206803

Luke Campillo @lcampillo.bsky.social · 10/03/2024

People: how does ADHD really impact your life…? Me:

A picture of my hand. Walking the dog and holding two pairs of sunglasses. I even went back to make sure I had sunglasses.

120

Luke Campillo @lcampillo.bsky.social · 10/03/2024

So I play rugby with people who are mostly in their 20s, and I’m in my 30s. Today I came out of the match early and one guy was like “are you okay? What did you injure?!” And another guy was like “Luke’s just old. He’s fine, just old” 👴🏼💀😂 I have become the old man on the team. Life is complete.

060

Luke Campillo @lcampillo.bsky.social · 07/03/2024

OMG! My figure making game is going to be through the roof! 🧪

041

Luke Campillo @lcampillo.bsky.social · 05/03/2024

I’m thinking I’ll start a petition to get Brian to bring lemon glaze cookies to the next SSB standalone meeting. Like this post if you agree!

050

Luke Campillo @lcampillo.bsky.social · 04/03/2024

These two songs just came on back to back on shuffle. If you get the significance of that, let’s be friends. If not, go watch Nacho Libre.

Screenshot of Tenacious D’s Wicked Game playing on Spotify. Jack Black is one of two shirtless men frolicking in the water in the cover photo.

A screenshot from Spotify of Bubble Gum by Mister Loco. I don’t know much about this song other than it’s in Nacho Libre, which Jack Black stars in. IYKYK.

000

Luke Campillo @lcampillo.bsky.social · 01/03/2024

Probably the best practical advice I’ve seen on here 🤣

040

Luke Campillo @lcampillo.bsky.social · 01/03/2024

How does this not get at least one like…? 🥺

010

Luke Campillo @lcampillo.bsky.social · 29/02/2024

Relocated this crazy creature from our deck just now! Must’ve been stunned or something, because they gladly accepted my offer for a ride to the neighbor’s yard 😅

A menacing looking bug. Venom from Spiderman vibes. It was slow crawling on our deck where our dog likes to hang out, so I coaxed it up onto my pocket knife and move it to the neighbors yard. Good luck and Godspeed you scary, lovely beast!

040

Reposted by Luke Campillo

Kinsey Brock @doc-brock.bsky.social · 29/02/2024

🧪Buying a UV-VIS-NIR spectrometer for The Lab. We do lots of fieldwork in remote, hot, dry places. A *portable* unit that can take the heat and has a good battery life is ideal. Is Ocean Optics/Insight still the way to go? Anyone have a unit they recommend? TY #colsci #fieldwork 🦎🏝

A wee uninhabited seabird island in the Sporades island cluster, Greece.

1135

Reposted by Luke Campillo

Orlando Schwery @oschwery.bsky.social · 28/02/2024

Come explore the frontier of PCM with us! Mariana P. Braga (www.marianapbraga.com ) and I host the symposium “What we can and cannot know through current and upcoming Phylogenetic Comparative Methods” at the joint @Evol_mtg in Montréal and want your views in that discussion! #Evol2024 🧵1/8

11810

Luke Campillo @lcampillo.bsky.social · 23/02/2024

Them: What kind of person do you want to be when you grow up? Me:

A picture of a cook book called “Dessert Person” (by Claire Saffitz)

141

Luke Campillo @lcampillo.bsky.social · 18/02/2024

Is there a flag in the populations module of STACKS to include invariant sites in VCF? Trying to input file for pixy 🤓 (I know I could do this w/ e.g., GATK. But I have a STACKS-based pipeline for this ddRAD dataset, so I’d rather just tweak that) @jcatchen.bsky.social @ksamuk.bsky.social

221

Reposted by Luke Campillo

Marie Cerda @primalux.thedeadbird.club · 16/02/2024

This is so sad. The collections housed here are not just national treasures for Colombia, but invaluable treasures for the scientific community, and the world. I really hope that they can somehow get the money they need to save them.

elpais.com

Colombia presume de ser el país más diverso del mundo, pero su colección biológica está en riesgo

El edificio que alberga 3,5 millones de especímenes de plantas, aves, insectos y hongos tiene una falla estructural y filtraciones de lluvia. Construir uno nuevo costaría 24 millones de dólares

0912

Luke Campillo @lcampillo.bsky.social · 13/02/2024

I pretty much never get sick. Like once every 18 months, tops. And even then, I can usually just sleep it off. But I’ve now been sick 2X in the last 10 days. Guess it’s time for my quinquennial check-up 😅

030

Reposted by Luke Campillo

Kinsey Brock @doc-brock.bsky.social · 08/02/2024

🧪 Funding opportunities for students doing animal behavior research ! 🦎 🙈 🐦

01311

Luke Campillo @lcampillo.bsky.social · 07/02/2024

Amazing to see ‘ōpe‘ape‘a (Hawaiian hoary bat) in Waimea Canyon on Kaua‘i Island. A lifer for me! 🦇 Note: We were basically in a cloud. This pic does not have any color filters applied. So cool.

Picture of a bat flying in Waimea Canyon. Everything is in greyscale because of the weather. Cold and rainy. But a waterfall is rushing in the background and the bat is flying. Nature doesn’t mind some rain.

171

Luke Campillo @lcampillo.bsky.social · 06/02/2024

Trump has no immunity from Jan. 6 prosecution, Toby Keith has died, and Bluesky is open! What a day!

040

Luke Campillo @lcampillo.bsky.social · 06/02/2024

Let’s hope this nice place doesn’t sour too quickly 🤞🏼🦋🤞🏼

020

Luke Campillo @lcampillo.bsky.social · 22/01/2024

Just getting around to reading this (so far great) manuscript. And I’ve got a favor to ask you all: can we pleeaaaaseee please pronounce this species concept (RRCC) as “R2C2” - like the droid…? Pretty please 🙏🏼

130

Luke Campillo @lcampillo.bsky.social · 19/01/2024

Academia work-life balance tip: Turn off the option to get job status update emails from the compute cluster

120

Luke Campillo @lcampillo.bsky.social · 18/01/2024

I feel like I stopped getting new invite codes on here…? Anyone else? I don’t need any, but been at “5 available” for a while now 🤷🏻‍♂️

210

Luke Campillo @lcampillo.bsky.social · 14/01/2024

Hey, botanists, what’s going on here…? Two plants? One plant going half-half? What?

A plant that looks like it’s half red flowers and half yellow flowers. I suppose it could be two individual plants, but who knows with those things…

010

Luke Campillo @lcampillo.bsky.social · 13/01/2024

Just logged onto eBird, and I’ve gotta say: that’s a damn good lookin duck! 🪶

Picture of a Torrent Duck on the eBird landing page

020

Luke Campillo @lcampillo.bsky.social · 03/01/2024

Nothin like the first full-contact rugby practice of the season to remind me of my age 👴🏼😂

110