iiinova — where your digital self keeps evolving

Luke Campillo @lcampillo.bsky.social · 16/01/2025

Oh! This looks promising! Thanks, Brant

Luke Campillo @lcampillo.bsky.social · 16/01/2025

I am using arrays, but wanted to see about two arrays in one sbatch. For example, do something across all individuals, then for all scaffolds, where n_inds ≠ n_scaffolds. Running separate arrays is working, just not as efficiently as I’d like haha 😅 thanks tho!

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Luke Campillo @lcampillo.bsky.social · 15/01/2025

I would really appreciate any code you’re willing to share! Ready to risk mixed success at this point haha 😂 My UHawaii email, please & thank you!!! 🙏🏼

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Luke Campillo @lcampillo.bsky.social · 15/01/2025

My first thought was Snakemake. Any thoughts @vsbuffalo.bsky.social ?

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Luke Campillo @lcampillo.bsky.social · 15/01/2025

Can you run sequential slurm arrays with one job submission? E.g., make bam files for all inds, then make individual VCFs when bam step is complete. I currently do this with separate job submissions, but would like to combine into one job submission. Thanks! #bioinformatics

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Luke Campillo @lcampillo.bsky.social · 08/01/2025

I SEE WHAT YOU DID THERE. A LYCAN SAY IS: 😎

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Luke Campillo @lcampillo.bsky.social · 23/12/2024

One of the top birds (imho). Love the illustration too 🤩

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Joanna Masel @joannamasel.bsky.social · 19/12/2024

Phylogenetics methods announcement: piqtree is out! It exposes selected IQ-TREE2 capabilities within Python, using the cogent3 library as the interface, better enabling pipelines. piqtree is an addition to, not a replacement of, IQ-TREE2. Full announcement at github.com/iqtree/piqtr...

github.com

piqtree: IQ-TREE2 meets Python via cogent3 · iqtree piqtree · Discussion #145

The developers of IQ-TREE2 and cogent3 have joined forces to bring the power of IQ-TREE2 to Python users as piqtree. piqtree exposes selected IQ-TREE2 capabilities within Python, using the cogent3 ...

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Richard McElreath 🐈‍⬛ @rmcelreath.bsky.social · 19/09/2024

If you hate statistics like I do, then you'll love my free lectures. Putting science before statistics, 20 lectures from basics of inference & causal modeling to multilevel models & dynamic state space models. It's all free, made with love and sympathy. 🧪 #stats www.youtube.com/playlist?lis...

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Robert Reich @rbreich.bsky.social · 17/12/2024

Trump says he's wants to privatize USPS because it's "unprofitable". Reminder that the Post Office isn't a for-profit enterprise: it's a public service that guarantees everyone in America reliable, affordable, and universal mail service.

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Luke Campillo @lcampillo.bsky.social · 16/12/2024

Gahhhhhhh!!! ☺️🥳🤩 This is an exciting start to the week 😎

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Luke Campillo @lcampillo.bsky.social · 13/12/2024

Such great news!! Congrats 🥳🥂

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Luke Campillo @lcampillo.bsky.social · 13/12/2024

People: don’t you just get a job when you’re a doctor…? You can just be a professor, right? Me: 👇🏼

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Alex Holt @alexjholt.bsky.social · 07/12/2024

Whoop whoop back to 1000 followers, so you know what I haven't done in ages? ART GIVEAWAY! If you follow me and reskeet this post and at 5pm next I'll do either a creature illustration or a character bust of your choice! *Note: Bot, AI, NFT, scraper etc accounts will disqualified disqualified

A black and white painting on a bright red background of the Finger Blasters - the protagonists of Science and Sorceries' Witness to Ruin campiagn. Muck in an angry half orc swinging a sword over her head. Blirta is a small balf elf with vaguely pubk clothing, firing an energy beam from her left eye. Nimbo is a tall firbolg wearing scalemail with lightning crackling from his extended hand. Em is an Uncina - a snow leopard person - firing magic missiles from a wand grasped in their tail.

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Erica Larson @ellarson.bsky.social · 20/11/2024

We have a postdoc position available in the lab on post-copulatory barriers in hybridizing crickets. We have genomic data ready to be analyzed and crickets ready for experiments. This is a great collaborative group and a study system with a lot of potential for new projects. Join us!

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Luke Campillo @lcampillo.bsky.social · 07/12/2024

I recently saw a [conservation focused] talk discussing how a single SNP confers resistance to a toxin in an endangered species. And I thought “how cool!” - I did not think about how a one SNP could also confer a more harmful result 😅🫠

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Luke Campillo @lcampillo.bsky.social · 06/12/2024

Shout out to your 5yo and the Bluesky science community for my fun fact of the day! 🤯😎🤩

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Shelly Gaynor @shellygaynor.bsky.social · 04/12/2024

After lots of delay - we just updated the MIT living wage in our stipend database and we are back to only two points above the line! See more: rhettrautsaw.app/shiny/Biolog... #PhDStipend #Biology @reptilerhett.bsky.social

Annual salary vs MIT living wage, only two points fall above the 1:1 line and pay a living wage.

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Luke Campillo @lcampillo.bsky.social · 05/12/2024

Learn something new every day! 🤪😂

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Luke Campillo @lcampillo.bsky.social · 30/11/2024

I dig the knives 🔪 good lookin collection! 😎

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Kevin Bird @stairwaytokevin.bsky.social · 29/11/2024

How much more can he take from us

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Luke Campillo @lcampillo.bsky.social · 29/11/2024

Yoooo!! I am glad to see you here, mate. I was off the socials for a while too, but so far this place has been a mood booster rather than drainer (we’ll see how long that lasts lol but for now it’s nice) 👍🏼

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Luke Campillo @lcampillo.bsky.social · 29/11/2024

I am, admittedly, not a population geneticist by training. And so I distinctly remember the aha moment where I realized: If you filter everything that’s “weird” then nothing is [the good kind of] weird 🙃🫠

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Bill Cresko @wcresko.bsky.social · 25/11/2024

Tapping the wisdom of the SkyMind. I’ve previously developed educational programs in genomics and bioinformatics at the graduate level, as well as undergrad data science program, and now building a broad PhD program in biomed/biological/bioengineering data science. #science #evolution #genomics 1/1

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Luke Campillo @lcampillo.bsky.social · 20/11/2024

The book is cited much more frequently, but this article came out a few years earlier (and still has 3,500 citations lol not too shabby)

Evolution (the journal) article titled “An equilibrium theory of insular zoogeography” by MacArthur & Wilson (1963).

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Luke Campillo @lcampillo.bsky.social · 20/11/2024

This is an amazing resource for students, teachers, and researchers alike! Thanks for all your hard work creating and maintaining this, Graham 😎😊🤩 #popgen

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Luke Campillo @lcampillo.bsky.social · 19/11/2024

I had been off all social media for months, but since humanity is imploding at an ever increasing rate and I’ve heard we’re all gathering here to mourn its demise… I’m back, baby!✌🏼

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Luke Campillo @lcampillo.bsky.social · 02/05/2024

You’re on a roll! Crossbill and then bunting?!? 🤩

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Luke Campillo @lcampillo.bsky.social · 25/04/2024

Note: I’m not at all a British person 😅

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Luke Campillo @lcampillo.bsky.social · 25/04/2024

Maybe something like “…those in the know”?

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Luke Campillo @lcampillo.bsky.social · 25/04/2024

Agreed! Prestige be dammed, let me talk with the folks! (But, also, help me cover printing costs lol)

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Luke Campillo @lcampillo.bsky.social · 25/04/2024

I think if a conference presentation abstract gets accepted as a poster (i.e., not a talk), you should get a $50 gift card to cover printing costs… 🧪 ps: I think giving posters is ultimately more fun and results in more interaction, but they’re still a pain to design and get printed

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Luke Campillo @lcampillo.bsky.social · 13/04/2024

🏄🏻‍♀️🌊🏄🏻‍♂️

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Luke Campillo @lcampillo.bsky.social · 12/04/2024

Shoot me straight: Do they make you sign something saying you won’t change your headshot for ~15-20 years…? Because I feel like these pics are never updated lol 🤪😂

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Luke Campillo @lcampillo.bsky.social · 08/04/2024

Eclipse [yada yada] totality [blah blah] 🤩

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Luke Campillo @lcampillo.bsky.social · 06/04/2024

That’s a badass looking… Pepper! 🤪 Haha jk that’s a badass Tacoma (and Peps is great too). You’ve got a proper truck, Joe ⭐️

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Luke Campillo @lcampillo.bsky.social · 06/04/2024

Does this place care about real trucks? Or was that only in the other place, the “cyber truck” place…?

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Luke Campillo @lcampillo.bsky.social · 02/04/2024

That’s THE STARS to you 😹

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