After knitr v1.52 went to CRAN on 2026-09-06, I did something I don’t do often but have been hoping to do: I sat down and worked through the GitHub issue tracker more or less top to bottom. Over...

My wrap-up of the Bioconductor 3.23 release

My wrap-up of the Bioconductor 3.23 release

Fixes #91 These changes are from both me and @Artur-man The main public-facing changes here are: The ZarrAnnData class read_zarr and write_zarr top-level functions Support for from_Seurat(output_c...

Frameworks, formats and Interoperability

The open source Git project just released Git 2.54. Here is GitHub’s look at some of the most interesting features and changes introduced since last time.

An R package for working with LaminDB instances. Contribute to laminlabs/laminr development by creating an account on GitHub.

Links and resources from my time on Posit’s Data Science Lab in January 2026

Lead the next wave of biomedical discovery

Getting the best of both worlds.

This Registered Report presents a benchmarking study evaluating the impact of feature selection on scRNA-seq integration.

Code for "Feature selection methods affect the performance of scRNA-seq data integration and querying" - theislab/atlas-feature-selection-benchmark

A summary of our recently published paper “Feature selection methods affect the performance of scRNA-seq data integration and querying”