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John S. Wilkins

@jswilkins.bsky.social
1.4K followers 279 following 857 posts

Historian and Philosopher of Biology, focusing on species and taxonomy. Blog: https:/evolvingthoughts.net, Mastodon: fediscience.org/deck/@jswilkins, Substack: substack.com/@johnwilkins.

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Reposted by John S. Wilkins
Alison 🇨🇦 @n8rnerd.bsky.social · 01/10/2026
When I was in grad school (2010-12) I had a textbook published in 1999 for philosophy of biology.
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ISBN Book Bot 🤖 @bot.isbn.nu · 01/10/2026
📖 A History of the Life Sciences, Revised and Expanded by Lois N. Magner isbn.nu/9780824708245
Cover of A History of the Life Sciences, Revised and Expanded, by Lois N. Magner, CRC Press, 2002, HRD.
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Beckett Sterner @beckettws.bsky.social · 02/10/2026
"Here, we develop mathematical models linking anisogamy to secondary sex-role evolution, showing that anisogamy drives sex-role divergence along contrasting evolutionary trajectories depending on ecological context." #philbio
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The Ramsey Lab @theramseylab.bsky.social · 02/10/2026
It is widely held that fitness is affected by population size, 'n.' But Grant Ramsey shows, in a new #openaccess paper in @jrnlofphil.bsky.social, that this familiar claim rests on both mathematical and conceptual mistakes.🔥 👇📃 doi.org/10.5840/jphi... #philsci #HPbio #evobio #philsky #HPS 🧪
Promotional black-and-white image announcing the publication of an article in The Journal of Philosophy. The text displays the journal title, the article title "Much Ado About ‘N'othing," and the author’s name, Grant Ramsey, in a minimalist layout.
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uncited @uncited.org · 08/09/2026
Jundzill et al. show that Bakta excels in annotating high-quality bacterial genomes, while PGAP is more effective for archaeal genomes and challenging bacterial assemblies. These findings provide a crucial guide for selecting annotation tools based on genome quality and taxonomy.
link.springer.com
Genome Biology
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Nathaniel Comfort @nccomfort.bsky.social · 07/09/2026
This elegant bio sketch of Jim Watson by @matthewcobb.bsky.social is balanced, nuanced, and graciously acknowledges my work on Watson. Even more graciously, it doesn't spill the beans on the many ways my book challenges the history of the gene. Coming next fall from Basic Books!
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John S. Wilkins @jswilkins.bsky.social · 08/09/2026
Not restricted to AI 🤖, but to all technologies that are being gamed to earn profit by making governments fear.
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Celso Neto @celsoneto.bsky.social · 03/09/2026
Season 2 of our online talk series starts this Tuesday! #philsci #philsky #STS #HPBio
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John S. Wilkins @jswilkins.bsky.social · 09/08/2026
Of course they fucking are…
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rss.dfaria.eu @rss.dfaria.eu · 05/08/2026
To Talk, to Think, to Ask: Biology in Philosophy What is the point of philosophy of biology? This is the question that continued to come up as I thought, scribbled, and erased while writing this piece. This question has also... blog.apaonline.org
blog.apaonline.org
To Talk, to Think, to Ask: Biology in Philosophy
What is the point of philosophy of biology? This is the question that continued to come up as I thought, scribbled, and erased while writing this piece. This question has also been ever present for me since I first started seriously practicing the discipline. To be honest, I’m not really sure...
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John S. Wilkins @jswilkins.bsky.social · 07/08/2026
Scummo made this decision without any kind of expert analysis, based on a back-of-the-napkin scribble, and American and British pressure has kept us in it. By now we'd have had French submarines under construction, for delivery a decade before the US nuclear submarines, in 2030 rather than 2040.
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John S. Wilkins @jswilkins.bsky.social · 30/07/2026
We were the generation that made the Clean Air laws, buddy
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Marília Horta Jung 🇵🇹🇪🇺🇨🇿🇺🇦 @phytophthorarc.bsky.social · 29/07/2026
Studies in Mycology, Zoltán Nagy et. al., 2026 #Taxonomy, #biogeography and evolution of thirty-four taxa in #Phytophthora Clade 7a including eleven new species from natural forests and updated descriptions for P. fragariae, P. rubi and the ‘P. x alni hybrid complex’ doi.org/10.3114/sim....
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John S. Wilkins @jswilkins.bsky.social · 29/07/2026
Looks worth following up
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Alisa Bokulich @alisabokulich.bsky.social · 29/07/2026
Happy birthday to the #geodesist Irene Fischer. Of interest to #HPS, she studied mathematics & #philosophy under Vienna Circle members Moritz Schlick & Hans Hahn. She escaped Nazis in Austria & settled in Boston, where her son Michael Fischer became anthropology & #STS prof @ MIT.
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PhilSci-Archive @philsci-archive.bsky.social · 27/07/2026
New on the Archive: Borge, Bruno (2026) Lakatos on the Metaphysics and Epistemology of Laws of Nature. [Preprint] philsci-archive.pitt.edu/30626
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PhilSci-Archive @philsci-archive.bsky.social · 27/07/2026
New on the Archive: Stern, Julio M. (2026) What is (an Organic) Analogy? Borromean Complementarity: Homology & Archetype, Chance & (De)Convexification, and Analogy & Prototype. [Preprint] philsci-archive.pitt.edu/30618
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Minnesota Center for Philosophy of Science @mcps-philsci.bsky.social · 27/07/2026
Catching up on a few of Center Director Alan C. Love’s recent publications - both are available #openaccess Measuring biological function in biomechanics: observations and consequences buff.ly/bhtxteP Philosophy of biology in an interdisciplinary key buff.ly/8AWc69g #philsci
buff.ly
Measuring Biological Function in Biomechanics: Observations and Consequences | Philosophy of Science | Cambridge Core
Measuring Biological Function in Biomechanics: Observations and Consequences
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Philippe huneman @philippehune.bsky.social · 28/07/2026
A great paper about Lovelock and Margulis’ Gaia and its first formulation in Tellus 50 years ago. Where do we stand now ? Who are the Gaians and what do they do ? By Tim Lenton and Sebastien Dutreuil In Tellus #geoscience #philsci #philbio #ecology storage.googleapis.com/jnl-su-j-tad...
storage.googleapis.com
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John S. Wilkins @jswilkins.bsky.social · 27/07/2026
pmc.ncbi.nlm.nih.gov/articles/PMC... #science, #medicine
pmc.ncbi.nlm.nih.gov
Father Loss and Child Telomere Length
This study of 2420 children reveals that separation from a father through death, incarceration, or separation and/or divorce is associated with accelerated telomere shortening in his children.
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Bennett McNulty @mbmcnulty.bsky.social · 24/07/2026
Paul Feyerabend in correspondence with Grover Maxwell, excited about his new typewriter.
mathematician who h as deterioated into philosophy and is very much interested into classical physics and the pos ibilities of formalization there, role of definitions, theory of measurement (he is developing a theory of
particle
measurement for classical particle nechanics with the help of signals of infinite speed), theory of observation etc.
Forgive this short letter, I really do not feel very well - all the best
Paul 

P.S.: My typewriter contains now the following impressive symbols
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Mark Rubin @markrubin.bsky.social · 19/07/2026
Prediction vs. Understanding? "Humans working with vehicles of understanding such as neural network models may be able to achieve greater levels of understanding." New work by @russpoldrack.org #PhilSci #Psychology
Abstract
It is commonly argued that understanding (particularly regarded in terms of intelligible explanation) and prediction are distinct and possibly competing objectives in scientific theorizing and modeling. Here I leverage Wilkenfeld’s notion of “understanding as compression” along with the link between prediction and compression from algorithmic information theory to establish that prediction and understanding are instead intimately linked. I clarify the definition of understanding as compression to address unclear aspects of Wilkenfeld’s original definition, and I propose that the oft-discussed conflict may result in part from confusion between understanding proper and vehicles of understanding (such as statistical or computational models). I exemplify the unification of prediction and understanding through compression via a discussion of the role of large neural network models as tools for understanding brain function in neuroscience.
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John S. Wilkins @jswilkins.bsky.social · 02/07/2026
Some guy who knows history and science
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Artemy Kolchinsky @artemyte.bsky.social · 25/06/2026
I just learned Peter Schuster passed away recently. Peter Schuster was a theoretician who did incredible work on the origin of life, evolutionary dynamics, genotype-phenotype maps, and other topics in theoretical biology. A huge loss.
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PhilSci-Archive @philsci-archive.bsky.social · 22/06/2026
New on the Archive: Scerri, Eric (2026) Is the philosophy of science, and of chemistry in particular, helpful to chemistry education? [Preprint] philsci-archive.pitt.edu/30248
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Karl Magnacca @kmagnacca.bsky.social · 23/06/2026
Unfortunately, retraction of this bogus windshield study as evidence of insect decline will get about 1/1,000,000th the attention of the original article. 🧪
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Daniel J Nicholson @djnicholson.bsky.social · 18/06/2026
What an honour to have one of my favourite historians of biology, Laurent Loison, review my book for History and Philosophy of the Life Sciences. He does an amazing job summarizing the main scholarly contributions of the book. I particularly appreciated his reflection at the very end. Read it here
rdcu.be
Daniel J. Nicholson: What is life? Revisited
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Greg Priest @gregpriest.bsky.social · 14/06/2026
Babbage would later use a model of the Difference Engine to show that what we perceive as miracles are better understood as consequences of laws of nature we don’t fully understand. He proposed the origin of new species of plants and animals as an example of this. #HistSTM 🐋🌱🧪 #PhilSci
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Carsten Timmermann @ctimmermann.bsky.social · 15/06/2026
#histsci #twitterstorians listen up!
Margulis’s endosymbiosis hypothesis is now accepted, but initially met scepticism and even ridicule. Sexism surely played a part in that, but there’s a thesis to be written on the resistance of academic biology to notions of cooperation and collaboration in evolution – or the determination to recast them as mere expediency by “selfish genes”. Margulis made the rather gender-essentialist claim that scepticism about symbiosis was a rejection of the “feminine”, but one can’t help noticing that an emphasis on interconnection in the natural world often came from women, whether it was Rachel Carson’s Silent Spring or the “wood wide web” of forestry scientist Suzanne Simard, the inspiration for a character in Richard Power’s 2018 eco-fable The Overstory.
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John S. Wilkins @jswilkins.bsky.social · 14/06/2026
I must read this issue
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Cristian Larroulet Philippi @cristianlarph.bsky.social · 07/06/2026
I'll be presenting this work at PSA (San Diego, Nov 2026). The question is how to think about "formative" (aggregate) constructs and their empirical measurements in the social sciences (e.g., socio-economic status). The standard view (e.g., Borsboom 2005) requires constructs to be causes of...
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Matt Haber @profmatthaber.bsky.social · 11/06/2026
Had two papers accepted in the last week: 1) "Common Ancestry, Contemporary Phylogenetics, and Process Ontology" in Systematic Biology (co-authored with @maureenmkearney.bsky.social). 2) "A Conventional View" in Biology & Philosophy (co-authored with Katherine Berensen & Peyton Cooper).
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Vincent J Lynch 🐘🦣🦥 🦇🐋🐢🐍 @devoevomed.bsky.social · 11/06/2026
Truth! There is so much confirmation bias in comparative oncology data that's known, but unspoken. We pick the species we study b/c they fit the #PetosParadox model, rather than doing the much harder inductive logic thing of getting lots of data and having it talk to us 🐋🌱 🧪 doi.org/10.1098/rspb...
doi.org
The cost of fame for popular species: strong risk of biases in comparative oncology of captive species
Abstract. Comparative oncology investigates variation in cancer risk across species by analysing relationships between observed tumour prevalence and facto
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John S. Wilkins @jswilkins.bsky.social · 11/06/2026
My herbal heroine!
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Linda Andersson Burnett @lindaaburnett.bsky.social · 09/06/2026
Between 1913 & 1918, Luxemburg compiled and annotated nearly 400 pressed leaves and flowers, even while imprisoned for her political activities. Rediscovered in 2009, her little-known herbarium offers a remarkable window into both the history of botany and her relationship with the natural world. 2/
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John S. Wilkins @jswilkins.bsky.social · 10/06/2026
The best falconer in the west!
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John S. Wilkins @jswilkins.bsky.social · 07/06/2026
I want an app that is just for grumpy old people to rant on. It will be called Grizzl.
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Thony Christie @rmathematicus.bsky.social · 03/06/2026
A new blog post series two thousand years of Calculus #histsci thonyc.wordpress.com/2026/06/03/t...
thonyc.wordpress.com
Take it to the limit one more time – a history of calculus 0
In the first half of the 1980s I studied mathematics, as a mature student, at the University of Erlangen. In those days a first degree at a German university was a master’s complete with dissertati…
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Marshall Abrams @marshall0i.bsky.social · 30/05/2026
#philbio
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Philip Ball @philipcball.bsky.social · 30/05/2026
I have read and enjoyed The Paradox of the Organism by @arvidagren.bsky.social and Manus Patten. I had a lot of thoughts about it, and about selfish genes. Here they are, in a long blog post. homunculusmusic.wordpress.com/2026/05/30/i...
homunculusmusic.wordpress.com
Is the organism a paradox?
I’m reading The Paradox of the Organism, a set of collected essays on this notion edited by Arvid Ågren and Manus M. Patten. It’s tremendously enlightening. It is also pretty consistent with the st…
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John S. Wilkins @jswilkins.bsky.social · 28/05/2026
Phylogenetic metrics for endemism PLOS: dx.plos.org/10.1371/jour...
dx.plos.org
Range-weighted branch length difference (RWiBaLD), a new method for distinguishing meso-endemism from neo-endemism and paleo-endemism
Our goal is to enhance understanding of phylogenetic endemism (PE), which is studied using a range-weighted phylogenetic tree. We present a new method called Range Weighted Branch Length Difference (R...
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Marshall Abrams @marshall0i.bsky.social · 18/05/2026
#philbio
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chris shambaugh @cshambaugh.bsky.social · 20/05/2026
I’m happy to share that our book proposal has been accepted in Routledge’s History and Philosophy of Biology series! I’m so excited and honored to be co-editing the volume - titled Dialectical Biology Today: Legacies of Richard Levins and Richard Lewontin - with Jonathan Basile and Denis Walsh.
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John S. Wilkins @jswilkins.bsky.social · 14/05/2026
Good to see the work of my late friend David Rindos being discussed, as he should have been back in the 80s. royalsocietypublishing.org/rstb/article...
royalsocietypublishing.org
Seeking consensus on the domestication concept
Abstract. The domestication of plants and animals permitted the development of cities and social hierarchies, as well as fostering cultural changes that ul
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John S. Wilkins @jswilkins.bsky.social · 02/05/2026
I call this the feet of clay problem.
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This Many Years Ago @thismanyyearsago.bsky.social · 01/05/2026
273 years ago, on the 1st of May 1753, Carl Linnaeus published the first volume of 'Species Plantarum'. In the full work over 7.300 species of plants are described. This date is seen as the starting point of modern botanical nomenclature. #otd #history 🗃️
Title page of Carl von Linnés book Species plantarum (1753)
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Linda Andersson Burnett @lindaaburnett.bsky.social · 27/04/2026
Seminar alert! Nuala Caomhanach (@nulybranch.bsky.social) : 'Collecting Rarity: The Conundrum of Instructing and Constructing - Histories of Malagasy Endemism from Colonial Plant Specimens', Wed 29 April, 15-16 CET, for Zoom link: please email instructingnaturalhistory@uu.se. 🧵
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British Journal for the Philosophy of Science @thebjps.bsky.social · 01/05/2026
From the new issue: When Is Similarity-Biased Social Learning Adaptively Advantageous? – Daniel Saunders Abstract in alt text or read it here: www.journals.uchicago.edu/doi/10.1086/... #philsci #hpbio #philsky
ABSTRACT. Some cultural evolution theorists claim that humans tend to imitate the traits of people who are similar to themselves. They also suggest selection shaped human psychology to attend to similarities and weigh them when learning from others. Little formal modelling explores the conditions under which this argument is valid. I develop models that suggest that that it depends on assumptions about the function of social roles. On the default view, social roles facilitate coordination but the model is not very robust in terms of the initial conditions, parameter settings or population structure. But if social roles facilitate the division of labour, then similarity-biased learning evolves under a wide range of conditions. These results improve our understanding inequality. Evolutionary bargaining models have been proposed to explain inequality. These models use similarity-biased learning assumptions. I suggest improvements to that research programme in light of these results.
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Center for PhilSci @center4philsci.bsky.social · 01/05/2026
In this episode of Conversations at the Center, Edouard Machery is joined by Kevin Zollman to discuss social epistemology and pluralistic ignorance. Available on YouTube, Spotify and Apple Podcasts. #podcast #philsci
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John S. Wilkins @jswilkins.bsky.social · 02/05/2026
Rereading Malthus: Darwin and the Historians | Isis www.journals.uchicago.edu/doi/abs/10.1... A revision to Robert Young’s reading
journals.uchicago.edu
Rereading Malthus: Darwin and the Historians | Isis
Abstract This essay revisits Charles Darwin’s reading of Thomas Robert Malthus’s Essay of the Principle of Population (6th ed., 1826), which furnished Darwin with the mechanism of natural selection. W...
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