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Jordiet 🧫🧬

@jordiisevilla.bsky.social
41 followers 227 following 3 posts
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Jordiet 🧫🧬 @jordiisevilla.bsky.social · 20/08/2026
New preprint with Julia Kende, Michael Meehan & @sebduchene.bsky.social ! Can we detect superspreading in Neisseria gonorrhoeae from genomic data? Here, we show how genomic data can be used to infer superspreading in N. gonorrhoeae using Bayesian phylodynamics www.medrxiv.org/content/10.6...
medrxiv.org
Quantifying superspreading in bacterial STI outbreaks using phylodynamics
Bacterial sexually transmitted infections (STIs) pose a major global public health challenge, with Neisseria gonorrhoeae being of particular concern due to its persistently high prevalence and increas...
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medRxivpreprint @medrxivpreprint.bsky.social · 17/08/2026
Quantifying superspreading in bacterial STI outbreaks using phylodynamics www.medrxiv.org/content/10.64898/20…
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Sophia David @sophia-david.bsky.social · 22/04/2025
Preprint on our new amr.watch tool from @thecgps.bsky.social - this incorporates and analyses genome data of key resistant pathogens from the public archives on an ongoing basis (every 4h) & presents the output via an interactive platform for monitoring AMR trends: www.biorxiv.org/content/10.1...
amr.watch
AMR.watch
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Alf Soler-Bistué 🦠🔬🧫 @alfmicrobe.bsky.social · 10/04/2025
I was waiting two years to see this out!! The genomic location of bacterial genes is not random!!! Congratulation on the authors (Martin Lercher and Team!). www.science.org/doi/10.1126/...
science.org
Most bacterial gene families are biased toward specific chromosomal positions
The arrangement of genes along bacterial chromosomes influences their expression through growth rate–dependent gene copy number changes during DNA replication. Although translation- and transcription-...
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Reposted by Jordiet 🧫🧬
Miguel 💻🧬 @ahmig.es · 03/04/2025
happy to share our new study! 🧪 while exploring how often #sars-cov-2 "repairs" deletions in BA.1, we found significant genome artifacts in GISAID 🤯 we compared with raw reads from ENA + tested the effects in vitro. turns out, data processing matters a lot 📉 check it out!! doi.org/10.1093/ve/v...
doi.org
Genome data artifacts and functional studies of deletion repair in the BA.1 SARS-CoV-2 spike protein
Abstract. Mutations within the N-terminal domain (NTD) of the spike (S) protein are critical for the emergence of successful SARS-CoV-2 viral lineages. The
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iBartomeus @ibartomeus.bsky.social · 29/01/2025
100 years with the Lotka-Volterra equation... let's celebrate!
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Lars Barquist @lbarquist.bsky.social · 17/01/2025
Interested in predicting AMR in bacteria? We show ignoring phylogenetic structure in genome collections leads to overly optimistic evaluations of machine learning methods for AMR prediction. With @nwheeler443.bsky.social and former PhD student Yanying Yu. 🦠🧫🧬🖥️🧪 www.biorxiv.org/content/10.1...
biorxiv.org
Biased sampling confounds machine learning prediction of antimicrobial resistance
Antimicrobial resistance (AMR) poses a growing threat to human health. Increasingly, genome sequencing is being applied for the surveillance of bacterial pathogens, producing a wealth of data to train...
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Rachel M. Wheatley @rachelmwheatley.bsky.social · 30/12/2024
Sharing three fully funded PhD opportunities to join my lab at Queen’s to work on topics spanning bacterial pathogens, antibiotic resistance, microbial interactions, & mobile genetic elements 🦠. Closing dates in January and February, and open to international candidates 🌍 Projects detailed below ⬇️
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Sandra Reuter @sandrareuter.bsky.social · 14/01/2025
📣Our latest paper is out now in mSystems: Not quite as it may seem - investigating #plasmid diversity and evolution in #Klebsiella pneumoniae at a single institution over time. A short thread 🧵 @zaminiqbal.bsky.social
Composite of the paper header showing all authors and an equation showing phylogenetic trees plus plasmids give a complex plasmid picture.
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