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Johan Ajnabi

@johanajnabi.com
416 followers 2.3K following 28 posts

PhD Candidate | Mechanobiology • Epigenetics • Regenerative Biology | Institute for Stem Cell Science and Regenerative Medicine (inStem) | Seeking Postdoctoral Opportunities (2026-27) More about me: johanajnabi.com

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Reposted by Johan Ajnabi
Prof Peter Hotez MD PhD DSc(hon) @peterhotezmdphd.bsky.social · 30/06/2025
journals.plos.org/plosbiology/...
New paper in PLOS Biology
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Johan Ajnabi @johanajnabi.com · 04/09/2026
Many thanks @jcb.org and @angelikahausser.bsky.social! Fascinating to see mechanotransduction being extended beyond the cell membrane and nucleus to the Golgi and secretory pathway. So many exciting questions remain around this mechanical–secretory loop. I’m looking forward to seeing how it evolves!
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Johan Ajnabi @johanajnabi.com · 02/09/2026
A fantastic thread on epithelial mechanics of apoptotic cell extrusion by @zoya-mann.bsky.social #epithelialmechanics #mechanobiology #apoptosis #cellsignaling
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Johan Ajnabi @johanajnabi.com · 02/09/2026
This meeting report from CellExIt#1 provides a great snapshot of the people, questions, and emerging directions shaping the field. Exciting to see how our understanding of extrusion continues to expand beyond simply “getting rid of cells.” journals.biologists.com/jcs/article/...
journals.biologists.com
Meeting report – CellExIt#1, the first international symposium on cell extrusion
Summary: The CellExIt#1 symposium gathered for the first time investigators working on cell extrusion. This report offers a panoramic view of the research teams and ongoing projects of the field.
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Johan Ajnabi @johanajnabi.com · 28/08/2026
Congratulations! Fantastic work!
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Reposted by Johan Ajnabi
epithelial mechanics fan club @epimechfc.bsky.social · 24/05/2026
Wound repair is more than simply closing a gap in the tissue. Mechanical injury rapidly reshapes signaling, nuclear organization, and cellular identity across the epithelium. I'm @johanajnabi.com, and here are studies that changed how I think about epithelial wound healing. bsky.app/profile/epim...
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Johan Ajnabi @johanajnabi.com · 12/08/2026
Thank you, SICB (@sicb.bsky.social), for the feature and the warm welcome! Looking forward to connecting with and learning from the amazing integrative and comparative biology community.
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Johan Ajnabi @johanajnabi.com · 07/08/2026
More about this work: johanajnabi.com/projects/vit...
johanajnabi.com
Spatial Transcriptomics in Vitiligo Skin | Johan Ajnabi
A project page on therapy-associated immune remodeling in vitiligo skin using spatial transcriptomic analysis.
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Johan Ajnabi @johanajnabi.com · 14/06/2026
🧬 𝗣𝗿𝗼𝗷𝗲𝗰𝘁 𝗼𝘃𝗲𝗿𝘃𝗶𝗲𝘄: johanajnabi.com/projects/ker... #CellCommunicationAndSignaling #StemCells #SkinBiology #CellSignaling #STAT3 #Integrins #Keratinocytes #RegenerativeBiology #CellBiology @binitadam.bsky.social @abhikdutta.bsky.social
johanajnabi.com
Keratinocyte Stemness and Mindin-Integrin-STAT3 Signaling | Johan Ajnabi
A project page on extracellular signaling, integrin trafficking, and transcriptional control of keratinocyte stemness.
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Johan Ajnabi @johanajnabi.com · 14/06/2026
I am grateful to my co-authors, collaborators, and mentors for their support throughout this project. It was a privilege to contribute as the second author to this work. 📄 𝗣𝗮𝗽𝗲𝗿: doi.org/10.1186/s129...
doi.org
Mindin-mediated αM-integrin endocytosis activates STAT3 to maintain keratinocyte stemness - Cell Communication and Signaling
Background Keratinocyte stem cells are essential for maintaining epidermal homeostasis and enabling efficient tissue repair. Regulation of their self-renewal and differentiation is critical, as its disruption can impair regeneration and drive pathological conditions such as chronic wounds and cancer. We previously identified the matricellular protein Mindin as a key regulator of keratinocyte stemness through its interaction with the αMβ2 (CD11b/CD18) integrin and subsequent activation of the transcription factor STAT3. However, the mechanism connecting Mindin and integrin at the cell surface to the intracellular activation of STAT3 remained undefined. Methods We employ biochemical and imaging analysis along with molecular dynamics simulations to dissect Mindin–integrin–STAT3 signalling in primary mouse keratinocytes. Stemness of epidermal keratinocytes are assessed using bulk RNA sequencing, quantitative PCR, and cell-based assays. Results Our work demonstrates that the F-Spondin domain of Mindin constitutes the minimal integrin-binding module required to initiate downstream signalling. F-Spondin binding to the integrin at the plasma membrane does not elicit the full activation state of the integrin. Instead, it promotes Src-kinase dependent endocytosis of the integrin receptor to the early endosomes. Analysis of integrin conformational dynamics reveals that the acidic environment of early endosomes is essential to achieve a signalling-competent state. This mechanism extends to pathological contexts, as we demonstrate a requirement for endocytosis in activating STAT3 signalling and preserving stem-like properties in a cancer stem cell model. Conclusions These findings highlight a previously unrecognized layer of spatial control in integrin signalling, confirming endosomal trafficking as a critical determinant of stem cell behaviour and offering new conceptual and therapeutic opportunities across regenerative biology and cancer.
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Johan Ajnabi @johanajnabi.com · 14/06/2026
What I find particularly fascinating is that this work highlights a role for integrins beyond adhesion. The trafficking of integrins themselves can actively shape signaling outputs and ultimately influence cell fate decisions.
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Johan Ajnabi @johanajnabi.com · 14/06/2026
We found that the matricellular protein Mindin promotes αM-integrin endocytosis, triggering sustained STAT3 signaling that is required to preserve the stem/progenitor state of keratinocytes.
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Johan Ajnabi @johanajnabi.com · 14/06/2026
𝗛𝗼𝘄 𝗱𝗼𝗲𝘀 𝗮 𝘀𝗸𝗶𝗻 𝘀𝘁𝗲𝗺 𝗰𝗲𝗹𝗹 𝗸𝗻𝗼𝘄 𝘁𝗼 𝗿𝗲𝗺𝗮𝗶𝗻 𝗮 𝘀𝘁𝗲𝗺 𝗰𝗲𝗹𝗹? Our latest study, now published in the 𝘾𝙚𝙡𝙡 𝘾𝙤𝙢𝙢𝙪𝙣𝙞𝙘𝙖𝙩𝙞𝙤𝙣 𝙖𝙣𝙙 𝙎𝙞𝙜𝙣𝙖𝙡𝙞𝙣𝙜, uncovers an unexpected mechanism linking the extracellular environment to the maintenance of keratinocyte stemness.
Screenshot of the publication page for the open-access research article “Mindin-mediated αM-integrin endocytosis activates STAT3 to maintain keratinocyte stemness,” published in Cell Communication and Signaling on 3 June 2026. The study investigates how Mindin, integrin trafficking, and STAT3 signaling regulate keratinocyte stemness.
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Johan Ajnabi @johanajnabi.com · 31/05/2026
Fascinating observation. In our work, injury-induced signaling regulates DNMT3A nuclear translocation during wound repair. It's remarkable how DNMT3A repeatedly appears at critical cell-state transitions across both regeneration and cancer.
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Johan Ajnabi @johanajnabi.com · 31/05/2026
Honored to see our recent preprint featured by the Epithelial Mechanics Fan Club. We explore how wound-induced actin remodeling drives ERK inactivation and DNMT3a localization linking epithelial mechanics to epigenetic regulation during repair. I would love to hear your thoughts and feedback. 👇
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Johan Ajnabi @johanajnabi.com · 31/05/2026
Excited to see this work from our lab featured by the Epithelial Mechanics Fan Club. This study explores how epithelial tissues respond to injury through dynamic changes in signaling, mechanics, and cellular state. Many of the questions raised here went on to inspire aspects of my own research. 👇
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Johan Ajnabi @johanajnabi.com · 24/05/2026
Special thanks to @juliaeckert.bsky.social and @onenimesa.bsky.social for giving me the opportunity to express my thoughts and communicate my discoveries, and highlighting me as delegate. Happy to be part of @epimechfc.bsky.social community.
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Johan Ajnabi @johanajnabi.com · 24/05/2026
I wrote this thread to explore how epithelial tissues reinterpret mechanical injury through signaling rewiring, cytoskeletal remodeling, and epigenetic plasticity during wound repair. Would love to hear your thoughts and discussions 👇
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Johan Ajnabi @johanajnabi.com · 31/03/2026
Excited by how spatial approaches can reveal biology that we would otherwise miss. Read the full article here: doi.org/10.1002/cti2... @binitadam.bsky.social
doi.org
<em>Clinical & Translational Immunology</em> | ASI Journal | Wiley Online Library
Narrow-band UVB (NBUVB) phototherapy is an effective, non-invasive treatment for vitiligo vulgaris, but its impact on dermal T cells—the key drivers of disease—remains unclear. Using spatial transcri...
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Johan Ajnabi @johanajnabi.com · 31/03/2026
This project pushed me to think about disease and treatment at the level of tissue architecture. Vitiligo is shaped by immune activity in the skin, but the spatial organization of that response shifts with therapy - something that is easily lost when reduced to bulk measurements.
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Johan Ajnabi @johanajnabi.com · 31/03/2026
Happy to collaborate with my colleague @abhikdutta.bsky.social on this fantastic work: linkedin.com/posts/johana... #Vitiligo #SpatialTranscriptomics #Dermatology #Collaboration #Immunology #TranslationalResearch
linkedin.com
Clinical &amp; Translational Immunology | ASI Journal | Wiley Online Library | Johan Ajnabi
Happy to collaborate with my colleague Abhik Dutta on this fantastic work. This project pushed me to think about disease and treatment at the level of tissue architecture. Vitiligo is clearly shaped ...
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Johan Ajnabi @johanajnabi.com · 18/02/2026
6/6: Grateful to friends who patiently tested it and broke it in useful ways. @binitadam.bsky.social, Abhik Dutta, Ananya Grewall, and Mainak Basu If you’re curious: johanajnabi.com
johanajnabi.com
Johan Ajnabi | Mechanobiology & Epigenetic Regulation
PhD candidate researching mechanobiology and epigenetic regulation in skin biology at inStem, India.
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Johan Ajnabi @johanajnabi.com · 18/02/2026
5/6: As I start thinking seriously about postdoctoral directions in translational research — especially mechanobiology, epigenetics, and regeneration — I wanted a space that reflects both my science and how I think about it.
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Johan Ajnabi @johanajnabi.com · 18/02/2026
4/6: More than learning HTML and CSS, the process forced me to clarify my scientific identity. How do I describe my work clearly? What story does my research tell? What should someone understand in 30 seconds?
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Johan Ajnabi @johanajnabi.com · 18/02/2026
3/6: It wasn’t smooth. And it definitely wasn’t fast. AI turned out to be a very patient coding tutor — but you still have to understand what you’re building.
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Johan Ajnabi @johanajnabi.com · 18/02/2026
2/6: There were evenings when I completely broke the layout and had no idea why. Debugging CSS feels surprisingly similar to troubleshooting experiments. I now have a much deeper respect for front-end developers.
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Johan Ajnabi @johanajnabi.com · 18/02/2026
1/6: Over the past few weeks, I stepped outside the lab and tried something new: I built my academic website from scratch. I had only a very preliminary understanding of HTML — so this was… an adventure.
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Johan Ajnabi @johanajnabi.com · 03/02/2026
Meet the one-eyed mechanobiology monster. Turns out cells look terrifying when you zoom in far enough. 👾🔬 #microscopy #alien #monster #mechanobiology #CellBiology #confocal #imaging #immunofluorescence
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Johan Ajnabi @johanajnabi.com · 03/02/2026
Signaling depends not just on interactions, but on location. In our recent study led by @binitadam.bsky.social, we show that Mindin-αM integrin signaling requires trafficking to acidic early endosomes, where pH-driven integrin conformational changes enable STAT3 activation and stemness. #signaling
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Reposted by Johan Ajnabi
Longtail News @longtail-news.bsky.social · 22/02/2025
Feed: "JCI Insight -- New Articles" By: Sunny Kataria, Isha Rana, Krithika Badarinath, Rania F. Zaarour, Gaurav Kansagara, Sultan Ahmed, Abrar Rizvi, Dyuti Saha, Binita Dam, Abhik Dutta, Ravindra K. Zirmire, Edries Yousaf Hajam, Pankaj Kumar, Akash Gulyani, Colin Jamora
insight.jci.org
Mindin regulates fibroblast subpopulations through distinct Src family kinases during fibrogenesis
Fibrosis results from excessive extracellular matrix (ECM) deposition, which causes tissue stiffening and organ dysfunction. Activated fibroblasts, central to fibrosis, exhibit increased migration, proliferation, contraction, and ECM production. However, it remains unclear if the same fibroblast performs all of the processes that fall under the umbrella term of “activation.” Owing to fibroblast heterogeneity in connective tissues, subpopulations with specific functions may operate under distinct regulatory controls. Using a transgenic mouse model of skin fibrosis, we found that Mindin (also known as spondin-2), secreted by Snail-transgenic keratinocytes, differentially regulates fibroblast subpopulations. Mindin promotes migration and inflammatory gene expression in SCA1+ dermal fibroblasts via Fyn kinase. In contrast, it enhances contractility and collagen production in papillary CD26+ fibroblasts through c-Src signaling. Moreover, in the context of the fibrotic microenvironment of the tumor stroma, we found that differential responses of resident fibroblast subpopulations to Mindin extend to the generation of functionally heterogeneous cancer-associated fibroblasts. This study identifies Mindin as a key orchestrator of dermal fibroblast heterogeneity, reshaping cellular dynamics and signaling diversity in the complex landscapes of skin fibrosis and cancer.
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Reposted by Johan Ajnabi
Journal of Clinical Investigation @jci.org · 04/08/2025
Behind-the-scenes: Dr. Dyuti Saha at the confocal microscope at the Core Imaging Facility in the Department of Life Sciences and Shiv Nadar University (an Institution of Eminence) capturing images of the vasculature in the fibrotic skin.
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Reposted by Johan Ajnabi
Journal of Clinical Investigation @jci.org · 10/08/2025
ICYMI: Vasculopathy occurs early in systemic sclerosis, but intervention strategies are lacking. Colin Jamora & team reveal ANGPTL2 as an inducer of vasculopathy that drives cutaneous fibrogenesis in mice—mirroring SSc—and present a therapeutic approach: UAS03. buff.ly/xNYvnRj
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Reposted by Johan Ajnabi
Journal of Clinical Investigation @jci.org · 04/08/2025
Vasculopathy occurs early in systemic sclerosis, but intervention strategies are lacking. Colin Jamora & team reveal ANGPTL2 as an inducer of vasculopathy that drives cutaneous fibrogenesis in mice—mirroring SSc—and present a therapueutic approach: UAS03: buff.ly/SpOiuCc
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Reposted by Johan Ajnabi
bioRxivpreprint @biorxivpreprint.bsky.social · 16/01/2026
Actin-dependent mechanotransduction controls nucleocytoplasmic partitioning of DNMT3a through ERK1/2 signaling during cutaneous wound healing www.biorxiv.org/content/10.64898/20…
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Johan Ajnabi @johanajnabi.com · 16/01/2026
How do mechanical cues at wounds reprogram skin cells? Our new study shows that actin remodeling regulates ERK1/2 signaling to allow DNMT3a nuclear entry, linking mechanotransduction to epigenetic control in early wound healing. #Mechanobiology #Epigenetics #WoundHealing #bioRxiv
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