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Joe Alcock

@joealcock.bsky.social
378 followers 409 following 203 posts

physician researcher and conservationist #EvMed #microbiome #NewMexican #EVs #Solar #Wilderness #EMsky #emimcc #Medsky #FOAMed evolutionmedicine.com 🇨🇦

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Reposted by Joe Alcock
International Society for Evolution, Medicine & Public Health @evmed.bsky.social · 21/06/2026
Why did farming change your gut? 🌾 Omenn Prize winners Johan Nordgren & Richard Ågren show that agriculture selected a FUT2 variant linked to viral protection—evolution shaping your microbiome long before modern medicine. #ISEMPH2026 Kiel: isemph.org/Program-2026
isemph.org
ISEMPH - Program
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Reposted by Joe Alcock
Asher Leeks @asherleeks.bsky.social · 28/04/2026
We're recruiting! We're looking for two graduate students to join us at UBC in Vancouver. Fully funded and open to global applicants, with flexible start-date. Topics include theory, bioinformatics, and microbiology. More details: asherleeks.com/apply #socialviruses #evosky #virosky 🧪
Leeks Lab is recruiting. We study social evolution in viruses. We're recruiting for two fully funded PhD or MSc positions, starting from September 2026. Evolutionary theory / experimental microbiology / viral bioinformatics. Experience optional / enthusiasm essential. asherleeks.com/apply
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Reposted by Joe Alcock
Vaughn Cooper @vscooper.micropopbio.org · 09/01/2026
🚨Call for papers🚨 Microbial Evolution: Impacts on Human Health in the society journal Evolution, Medicine, and Public Health Guest Editors: Bob Woods, Silvie Huijben & Camilo Barbosa EIC: me This will be great, please submit and share! academic.oup.com/emph/pages/m...
Microbial Evolution: Impacts on Human Health

Call for Papers

A defining characteristic of infectious diseases is that they evolve. The consequences of this evolution are among the most pressing medical issues facing humanity, including emerging pandemics, antibiotic resistance, and the success or failure of vaccines. Pathogen evolution profoundly influences virulence, transmission, and responses to a broad array of human interventions. While the evolutionary dynamics of pathogens have historically been challenging to study, large-scale genomic sequencing, novel computational tools, and experimental methods are rapidly changing the field. We encourage submissions on the broad topic of the evolution of infectious diseases.

This Special Issue aims to feature research that blends evolutionary approaches to understanding pathogen heterogeneity and ongoing genetic change in clinical samples and models of human infection. It also seeks to highlight opportunities to design treatment and prevention strategies that remain effective in the face of ongoing pathogen evolution.

Submission – open until January 31, 2027

Guest editors
Robert Woods, MD PhD, University of Michigan
Camilo Barbosa, PhD, University of Michigan 
Silvie Huijben, PhD, Arizona State University
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Reposted by Joe Alcock
Rebecca Sear @rebeccasear.bsky.social · 11/12/2025
"We propose that the X-chromosome is a promising marker to explore the genetic underpinning of menopause in matrilineal whale species and could provide a key comparison (and contrast) to the genetic basis of menopause in humans" royalsocietypublishing.org/rsbl/article...
royalsocietypublishing.org
Sexually antagonistic selection, X-chromosome relatedness and the evolution of menopause in killer whales
Abstract. The human menopause is hypothesized to be an adaptive trait that allows post-reproductive females to invest in, and avoid reproductive conflict w
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Reposted by Joe Alcock
Prof. Ruth Ley FRS @microbiome.bsky.social · 13/12/2025
Happy to share this paper by doctoral student Mirabeau Mbong Ngwese who assessed gut microbiome associations with soil transmitted parasites for adults and kids in Gabon and corroborated findings with data from other studies from Africa www.tandfonline.com/doi/full/10....
tandfonline.com
Infection with gut parasites correlates with gut microbiome diversity across human populations in Africa
Soil-transmitted helminths (STH) are common in (sub)tropical regions and primarily affect impoverished populations. These parasites reside in the gut, where they interact with both the microbiota a...
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Reposted by Joe Alcock
Sean Gibbons 🦠💩 @gibbological.bsky.social · 07/12/2025
A diet enriched in microbiome-fermentable substrates (more fruits and veggies) was shown to be associated with lower frailty and lower mortality risk in an older cohort (N>6000; 65+ y/o), with inflammation markers significantly mediating the dietary effect. link.springer.com/article/10.1...
link.springer.com
Associations of dietary intake for gut microbiota with frailty risk and mortality in older adults - Journal of Translational Medicine
Journal of Translational Medicine - The associations between a diet that associated with a healthy gut microbiota and the risk of frailty, as well as mortality in older adults with frailty, remains...
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Joe Alcock @joealcock.bsky.social · 21/10/2025
“In addition to antibiotics…several human-targeted drugs, such as beta-blockers, benzodiazepine derivatives, glucocorticoids, PPIs, biguanides, and antidepressants, display effects on the microbiome observable years after previous drug intake”
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Reposted by Joe Alcock
Cell Chemical Biology @cp-cellchembiol.bsky.social · 19/09/2025
Disruption to the gut microbiome by non-antibiotics is linked to infection risk dlvr.it/TN9lNG
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Jack Iwashyna @iwashyna.bsky.social · 20/08/2025
jamanetwork.com/journals/jam... This is a great explanation of emerging causal discovery techniques applied to biology, by the always readable @ajadmon.bsky.social and Erin Carlton
jamanetwork.com
Causal Discovery in Sepsis
Sepsis is acute organ failure resulting from a dysregulated host response to infection.1 Given the marked patient-level heterogeneity in sepsis onset, clinical course, and recovery, investigators have...
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Vaughn Cooper @vscooper.micropopbio.org · 14/08/2025
Hey HHS, look what scientists like me knew back in 2021👇🏻 We were right then and are right now. Vaccines don't *cause* variants. Rather, massive numbers of infections in people with no or waning immunity do. Evolution is no reason to avoid vaccination. theconversation.com/massive-numb...
theconversation.com
Massive numbers of new COVID–19 infections, not vaccines, are the main driver of new coronavirus variants
When the coronavirus copies itself, there is a chance its RNA will mutate. But new variants must jump from one host to another, and the more infections there are, the better chance this will happen.
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Joe Alcock @joealcock.bsky.social · 01/08/2025
Metformin is a weird drug - it works in the brain. But recall that there is a gut-brain axis too. What does this brain Rap1 mechanism do to the #microbiota?
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Reposted by Joe Alcock
Sarah Goodyear @sgoodyear.bsky.social · 26/07/2025
If your goal as a government is to prevent death rather than enable and accelerate it, it's amazing what you can do.
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Joe Alcock @joealcock.bsky.social · 26/07/2025
Has any sepsis intervention worked in children after failing in adults?
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Joe Alcock @joealcock.bsky.social · 25/07/2025
Hosts use flagellin as a cue to stop feeding because it is adaptive for hosts to restrain the growth and proliferation of flagellin expressing microbes
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Ran Blekhman @blekhman.bsky.social · 23/07/2025
Fascinating new paper reveals a new gut microbiome connection to heart disease. Microbes produce imidazole propionate (ImP), which directly triggers atherosclerosis through immune activation - even without high cholesterol. www.nature.com/articles/s41...
nature.com
Imidazole propionate is a driver and therapeutic target in atherosclerosis - Nature
Imidazole propionate produced by gut microbiota is associated with atherosclerosis in mouse models and in humans, and causes the development of atherosclerosis through activation of the imidazoline-1 ...
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Joe Alcock @joealcock.bsky.social · 09/07/2025
Amadou Gaye plenary talk on the need for a representative human pangenome. #Isemph2025 #EvMed
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Joe Alcock @joealcock.bsky.social · 09/07/2025
Great talk on the risk of egg donation as a source of genetic conflict in pregnancy by @reallymccoy.bsky.social winner of the Omenn prize at #ISEMPH2025 #EvolutionaryMedicine #EvMed
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Vaughn Cooper @vscooper.micropopbio.org · 10/04/2025
As new Editor in Chief of Evolution, Medicine, and Public Health, an OA society journal of ISEMPH, we welcome papers at the interface of evolution and medicine. I especially encourage studies in infection biology, broadly construed. We're a great and constructive journal! academic.oup.com/emph
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John F. Cryan @jfcryan.bsky.social · 05/07/2025
Stress and the microbiome -Nice profile of our recent paper led by fantastic postdoc @crosellcardona.bsky.social @apcmicrobiomeirel.bsky.social @anatneuroucc.bsky.social @uccresearch.bsky.social
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Joe Alcock @joealcock.bsky.social · 05/07/2025
Causal role for gut microbes in hypertension and sleep apnea complications? Fecal transplant from obstructive sleep apnea patients to mice caused - higher blood pressure, vascular inflammation and endothelial dysregulation. doi.org/10.1016/j.in...
doi.org
Redirecting
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Rebecca Sear @rebeccasear.bsky.social · 04/07/2025
A comparison of 2 industrialised populations (Italy, Singapore) with 2 indigenous populations (Tsimane, Bolivia & Orang Asli, Malaysia) suggests inflammaging - age-associated increase in chronic inflammation, considered a hallmark of aging - is a byproduct of industrialisation, not a human universal
nature.com
Nonuniversality of inflammaging across human populations - Nature Aging
Analyzing readouts of inflammaging across four cohorts, Franck and colleagues identify strong variation and observe that inflammaging, in its known form, primarily emerges in industrialized—but not no...
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Reposted by Joe Alcock
Vincent J Lynch 🐘🦣🦥 🦇🐋🐢🐍 @devoevomed.bsky.social · 02/04/2025
WTAF biology‽ 🧪 #EvMed
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Joe Alcock @joealcock.bsky.social · 04/07/2025
Targeting a lower (5% percentile blood pressure was safe in pediatric septic shock in a small trial. pubmed.ncbi.nlm.nih.gov/40511998/
pubmed.ncbi.nlm.nih.gov
Fifth Centile Versus 50th Centile Mean Blood Pressure Targets in Pediatric Septic Shock: A Randomized Controlled Trial - PubMed
Targeting a lower MBP (5th vs. 50th centile) in septic shock showed no significant difference in 28-day mortality. This suggests a lower BP target may be safe, reducing vasoactive drug use and related...
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Joe Alcock @joealcock.bsky.social · 03/07/2025
Inflammation is an urban industrialized phenomenon www.nytimes.com/2025/06/30/w...
nytimes.com
A Common Assumption About Aging May Be Wrong, Study Suggests
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Joe Alcock @joealcock.bsky.social · 03/07/2025
I wrote about curli and their consequences on the Evolutionmedicine blog. evolutionmedicine.com/2023/01/28/c...
tevolutionmedicine.com
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Reposted by Joe Alcock
Morten Kam Dahl Dueholm @mkddueholm.bsky.social · 02/07/2025
Functional amyloid proteins confer defence against predatory bacteria | Nature #MicroSky #Microbiomesky 🦠🧫 www.nature.com/articles/s41...
nature.com
Functional amyloid proteins confer defence against predatory bacteria - Nature
Escherichia coli uses curli fibres, oligomers of the functional amyloid CsgA, as a barrier to protect against the predatory bacteria Bdellovibrio bacteriovorus and Myxococcus xanthus in a mechanism th...
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Siobhán Cully 🇺🇸 🐱🥼🤓🩼 @siobhancully.bsky.social · 01/07/2025
Selection effect into funding: early-career funding predicts later funding success because people who are successful apply more (but don't have a higher success rate!): www.nature.com/articles/d41...
nature.com
Early grant success attracts more funding: study of 100,000 applicants hints at why
Largest study of its kind explores the ‘Matthew effect’ in research.
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Joe Alcock @joealcock.bsky.social · 02/07/2025
Sheep with higher antinuclear antibodies are protected from parasites and survive better when times are tough. Tells us something about the evolution of autoimmunity. ethz.ch/content/dam/...
ethz.ch
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Joe Alcock @joealcock.bsky.social · 01/07/2025
Do people really think extracorporeal blood purification will work in sepsis? #EMIMCC ccforum.biomedcentral.com/articles/10....
ccforum.biomedcentral.com
Use of extracorporeal blood purification therapies in sepsis: the current paradigm, available evidence, and future perspectives - Critical Care
Background Sepsis is the result of a dysregulated immune response to infection and is associated with acute organ dysfunction. The syndrome’s complexity is contingent upon the underlying pathology and...
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Joe Alcock @joealcock.bsky.social · 30/06/2025
Early vitamin C in the ED doesn’t affect disease progression or sepsis mortality. No surprise there. #EMIMCC ccforum.biomedcentral.com/articles/10....
ccforum.biomedcentral.com
Early administration of vitamin C in patients with sepsis or septic shock in emergency departments: a multicenter, double-blind, randomized controlled trial: the C-EASIE trial - Critical Care
Background Sepsis and septic shock are associated with high mortality and morbidity despite adequate standard care. Vitamin C deficiency is a common, potentially reversible, contributor to morbidity a...
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Joe Alcock @joealcock.bsky.social · 29/06/2025
A win for our #PublicLands and #wildlife
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Joe Alcock @joealcock.bsky.social · 29/06/2025
Too much of a good thing? Where things stand with oxygen therapy in critical illness. #EMIMCC evolutionmedicine.com/2025/06/28/t...
evolutionmedicine.com
Too much oxygen in critical illness?
Humans and other animals have evolved adaptations to hypoxia, most famously among high altitude people. Oxygen availability, especially at the tissue level, varies at sea level too. Adaptation to h…
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Joe Alcock @joealcock.bsky.social · 23/06/2025
Protect our public lands!
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Joe Alcock @joealcock.bsky.social · 22/06/2025
Haenyeo divers have genetic and training adaptations to cold water diving environments. This is great work from Melissa Ilardo who previously studied the Bajau in Indonesia
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Joe Alcock @joealcock.bsky.social · 21/06/2025
Why does hypoxia cause inflammation, and what does severe acute mountain sickness have in common with sepsis? Hypoxia can impair the gut barrier and change the relationship we have with pathogens. I wrote more here: evolutionmedicine.com/2025/06/19/w...
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Jo Poole @jopodr.bsky.social · 13/06/2025
Also in multiple septic patients, muscle/end tissue biopsies actually show adequate oxygenation but low ATP - shock is as much of a cellular state as a perfusion crisis and do we even need to perfuse “shocked” cells? #emimcc #CCR25
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@IM_Crit_ @imcrit.bsky.social · 12/06/2025
One of my many pet peeves is when every episode of fever in the ICU is treated. I have seen many patients who spiked a temp of 39 degrees Celsius overnight & next morning, I found them (shivering) in a cooling blanket in an attempt to "treat" the fever I know that the ICU is the kingdom of
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One Health Microbiome Center @psumbiome.bsky.social · 12/06/2025
Registration is open for our #WorldMicrobiomeDay lecture on June 27th, featuring special guest Curtis Huttenhower of Harvard Chan School of Public Health! Check out the press release and find the registration link in the story: www.psu.edu/news/huck-in...
psu.edu
Human microbiome pioneer to deliver World Microbiome Day lecture | Penn State University
Curtis Huttenhower, professor of computational biology and bioinformatics at the Harvard School of Public Health, will deliver a lecture to the Penn State community in honor of World Microbiome Day. T...
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Jo Poole @jopodr.bsky.social · 12/06/2025
#emimcc but are we surprised?
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Matthew Berry @the-mrberry.bsky.social · 12/06/2025
"To recap: hydrocortisone in shock is a classic example of an intervention that makes the numbers look better, but ultimately does not help the patient."
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The puppies Penn & Teller, and Richard @rdaily.medsky.social · 12/06/2025
I started practice when many of these diseases were still all too common. Lots of positive LPs and sweating bullets with kids with epiglottis. Full retirement soon for me but this totally unnecessary nightmare will be playing out for many doctors and nurses. #Medsky #EMedsky
abcnews.go.com
RFK Jr. appoints 8 new members to CDC's vaccine advisory committee, including some critics of shots
Robert F. Kennedy Jr. announced on Wednesday eight new members of the CDC's independent vaccine advisory committee, some of whom have been critics of shots.
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Damien BARRAUD @damienbarraudmd.bsky.social · 11/06/2025
Post hoc Fragility index 1 No predefined criteria to start RRT ("préAKIKI" era...) 🚮
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James Gurney @jamesgurney.bsky.social · 10/06/2025
Big day for the Gurney lab, first paper from the lab is now published. @sczerwinski.bsky.social led this work and answered a simple question does phage steering work when other bacteria are around? Tldr: yes! journals.asm.org/doi/epub/10....
journals.asm.org
Phage steering in the presence of a competing bacterial pathogen
You have to enable JavaScript in your browser's settings in order to use the eReader.
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Joe Alcock @joealcock.bsky.social · 03/06/2025
Hydrocortisone, Ascorbate (Vitamin C) and Thiamine (or HAT) was the shiny new thing in sepsis once. Verdict after multiple trials: Nope, doesn’t work, and Vit C might kill. So….let’s try it in children then? A recent pilot trial of septic kids showed more numerically more deaths in HAT group
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Joe Alcock @joealcock.bsky.social · 28/05/2025
Good for me, not for thee #microbiota
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Irene Salinas Remiro @drsalinaslab.bsky.social · 27/05/2025
Our latest paper is now out. A long standing collaboration with the Sunyer lab where our teams show the requirement for secretory IgM in the gut mucosa to control microbiota homeostasis and metabolism. Enjoy! #sIgM #mucosalimmunology www.nature.com/articles/s41...
nature.com
Secretory IgM regulates gut microbiota homeostasis and metabolism - Nature Microbiology
Rainbow trout with depleted secretory IgM reveal interesting insights into the elusive role of this immunoglobulin in maintaining gut microbiota.
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Mary Pezzulo @marypezzulo.bsky.social · 23/05/2025
I've never seen it so well put before.
A tweet from NBC news: Measles vaccination among babies skyrocketed in Texas as the outbreak grew, new research shows. 
Reply by Alex Griswold: Because in practice anti-vaxx is a luxury belief based on the assumption that your neighbors' vaccines do in fact work
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Joe Alcock @joealcock.bsky.social · 21/05/2025
#Publiclandowner everyday. Chiracahua Mountains
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Protect Our Winters @protectourwinters.bsky.social · 20/05/2025
The House GOP just introduced the biggest climate rollback in U.S. history. What’s at risk: 🏔️ 460K+ acres of public lands 💰 $250B in clean energy credits 🔋 1M+ clean energy jobs 🌎 $6.5B in community climate funding 🌱 NEPA protections protectourwinters.org/most-dangero...
protectourwinters.org
The Most Dangerous Climate Rollback in U.S. History: What it Means - Protect Our Winters
A dangerous new proposal is steamrolling through Congress—and it’s the most significant threat to U.S. climate progress in history.
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Joe Alcock @joealcock.bsky.social · 21/05/2025
Protecting public land is American as apple pie. Get out there while it is still yours.
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