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Isabell Grothaus

@isabellgrothaus.bsky.social
187 followers 154 following 8 posts

PostDoc at #Dioscuri Centre in @MCB_UJ and @MPIbp | Computational glycobiochemist Ultrarunner 🏔 🏳️‍🌈

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Isabell Grothaus @isabellgrothaus.bsky.social · 30/06/2025
Glycans' conformers 🥦 majorly influence their processing by CAZymes. Linkage and ring distortion are correlated!🤩 Check-out our new preprint:https://www.biorxiv.org/content/10.1101/2025.06.27.661892v1 Wonderful colab with Carme Rovira! #glycotime #CAZymes
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Matt Sikora @biophysmatt.bsky.social · 23/06/2025
Puzzled 🧩 how glycans 🍬influence protein life? With @rommiee.bsky.social @rocovino.bsky.social, Attilio Vargiu and Giorgio Colombo we made @cecamevents.bsky.social event that will clear things out for you! tinyurl.com/x7ajbzn9 Deadline 30.06! (look at the lineup...) @ncn.gov.pl @mpibp.bsky.social
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Rafael C. Bernardi @rcbernardi.bsky.social · 17/02/2025
🚀 First Bluesky Post! 🎉 VMD 2.0 Alpha is here! Released today at BPS 2025, this is the biggest update in 30 years—new UI, real-time ray tracing, fast surfaces, UHD & touchscreen support. Monthly updates coming in 2025! Try it now! #VMD #BPS2025 #MolecularVisualization www.ks.uiuc.edu/Research/vmd...
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BioExcel CoE @bioexcelcoe.bsky.social · 12/02/2025
Our webinar on new features and performance improvements in GROMACS 2025 is next week on Tuesday 18 February at 15:00 CET Don't forget to register ➡️ bit.ly/40Ebbme #webinar #moleculardynamics #GROMACS
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Alejandra Caraballo @esqueer.net · 31/01/2025
This is a 5 alarm fire. They're going to pull down all publicly available data, studies, guidance, etc that involves LGBTQ people so when the worst happens to us, no one will know. They're actively trying to erase us. gizmodo.com/cdc-ordered-...
gizmodo.com
CDC Ordered to Scrub Website of Words Like 'Transgender' and 'LGBT'
A CDC employee spoke with Gizmodo about the
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 31/01/2025
www.forbes.com/sites/roncar...
forbes.com
One More Time: Why Diversity Leads To Better Team Performance
Discussions on diversity in the workplace can be heated and contentious. But the data still shows more diverse teams outperform their less diverse peers. Here's how.
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Jörg Enderlein @joergenderlein.bsky.social · 29/01/2025
Georg Restle: „And the AfD laughs and smirks. “Now a new era begins!” The name Merz will go down in history as the man who, for the first time since 1945, made common cause with fascists. 80 years after the liberation of Auschwitz, the conservatives have learned nothing from history.“
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Gräter lab @graeterlab.bsky.social · 24/01/2025
Grappa is out: pubs.rsc.org/en/content/a... We are looking forward to feedback from and extensions by the community! Try it out for your favorite (bio)molecules - ligands, post-translational modifications, metal-enzymes, DNA, ...
pubs.rsc.org
Grappa – a machine learned molecular mechanics force field
Simulating large molecular systems over long timescales requires force fields that are both accurate and efficient. In recent years, E(3) equivariant neural networks have lifted the tension between co...
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Matthew Gibson @labgibson.bsky.social · 23/01/2025
We have a #postdoc researcher vacancy @UoMChemistry @UoMMIB . Join us to use our new automated glycan assembly (Glyconeer) platform to discover next generation sustainable polysaccharide materials in world-class labs and environment. #glycotime Pls RT. www.jobs.manchester.ac.uk/Job/JobDetai...
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EuroHPC Joint Undertaking @eurohpc-ju.bsky.social · 21/01/2025
Hello EuroHPC Community!👋 As of today, the EuroHPC Joint Undertaking is officially on #BlueSky! 🦋 We look forward to sharing updates and insights with you here. Follow us to stay informed on #EuroHPC developments! 💻⚡
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Matthieu Chavent @matthchavent.bsky.social · 20/01/2025
I am wondering if there are papers about starting a MD simulation project (eg 10 simple rules, Living journals of comp Mol Science , etc ..) ? What do you do/need ? It may be useful for students starting in the lab @lindorfflarsen.bsky.social @justinlemkulvt.bsky.social @agrossfield.bsky.social
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Isabell Grothaus @isabellgrothaus.bsky.social · 22/12/2024
Thanks for all the comments! Here comes my "not so elegant but so far only" solution as a Christmas gift 🎄 1. Build correct structure with glycam.org 2. Reorder and rename atoms to fit CHARMM convention topology from Charmm-gui 3. Use topology & FF files from Charmm-gui with corrected structure
glycam.org
GLYCAM-Web | Utilities for molecular modeling of carbohydrates
Utilities for molecular modeling of carbohydrates.
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Max Bonomi @bonomimax.bsky.social · 06/12/2024
Do you want to work at the interface of molecular simulations, structural biology experiments and #AI? Come to Paris for a PhD at @pasteur.fr 1 PhD position is available in our lab funded by ERC_Research. Please repost!! #compchem #compbio Info 👇 research.pasteur.fr/b/15Hr
research.pasteur.fr
One PhD thesis in integrative structural biology | Research - Institut Pasteur
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Bussi Lab @bussilab.org · 06/12/2024
📢 New #preprint describing our community effort to share #plumed tutorials arxiv.org/abs/2412.03595 ! Explore the tutorials at www.plumed-tutorials.org
arxiv.org
PLUMED Tutorials: a collaborative, community-driven learning ecosystem
In computational physics, chemistry, and biology, the implementation of new techniques in a shared and open source software lowers barriers to entry and promotes rapid scientific progress. However, ef...
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Isabell Grothaus @isabellgrothaus.bsky.social · 06/12/2024
Dear #comchem #glycotime folks 🍭, I need your help! Does anyone know a tool to build sulfated polysaccharides and get structure und topology files for GROMACS with CHARMM36 FF?🤔 Unfortunately Charmm-gui is placing sulfate groups in wrong orientations. Please RT! #moleculardynamics
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Giovanni Bussi @bussigio.bsky.social · 04/12/2024
Preliminary results from #CASP16 assessors suggest our prediction scored very well - we obtained the highest cross correlation between predicted and experimental density maps 🎉. Also Simon Poblete from southeRNA did very well 👏
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CompBioPhys @compbiophys.bsky.social · 04/12/2024
📢 It's our great pleasure to invite you all to our upcoming #Workshop on "Computer Simulation and #Theory of Macromolecules" in #Hünfeld on March 7-8, 2025 in #hybrid format! See you online or on-site! More details are provided here: www.mpinat.mpg.de/workshop/hue... #TheoryHünfeld2025 #biophysics
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Robert Aboukhalil @robert.bio · 04/12/2024
“We don’t value software, data, and methods in the same way we value papers, even though those resources empower millions of scientists” 💯 www.statnews.com/sponsor/2024...
statnews.com
New report highlights the scientific impact of open source software
Two of the scientists who won this year’s Nobel Prize for cracking the code of proteins’ intricate structures relied, in part, on a series of computing
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Isabell Grothaus @isabellgrothaus.bsky.social · 02/12/2024
🥳Hugh thank you to @brukercorporation.bsky.social and the University of Bremen for awarding me this year's study prize for my dissertation on the decoding of the GlycoCode with a focus on the influence of the 3D dynamics of glycans on biological processes. #glycotime #massspec #moleculardynamics ❤️
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Anne Imberty @anneimb.bsky.social · 17/11/2024
Still time to register to awsome Glycobiology Gordon Research Conference 2025. We have a fantastic line of speakers and this will be top #glycotime in Tuscany !! Register at www.grc.org/glycobiology...
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