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Gencode Genes

@gencodegenes.bsky.social
439 followers 317 following 10 posts

Human And Vertebrate Analysis aNd Annotation (HAVANA) team, part of the Ensembl group at the European Bioinformatics Institute.

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Reposted by Gencode Genes
EMBL-EBI Training @training.ebi.embl.org · 02/09/2026
Have you tried the new @ensembl.org platform yet? Together with the team, we've put together this quick tour to give you a short introduction to the new Ensembl website for exploring genomes from across the tree of life: www.ebi.ac.uk/training/onl... Learning time: >30 minutes. 🧬🖥️📊🌱
Online tutorial from EMBL-EBI Training. Ensembl data platform: quick tour. Learning time 30 minutes.
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Reposted by Gencode Genes
Ensembl @ensembl.org · 13/08/2026
Explore genes & transcripts with the @Ensembl Feature Explorer! Using human BRCA2 as an example, learn how to explore transcripts, exon structure & sequences, external references and orthologues across species. zurl.co/Q5YoZ #Ensembl #Genomics #Bioinformatics
youtube.com
Demo: Navigating the Feature explorer app
Learn how to explore genes and transcripts using the Ensembl Feature Explorer app.In this tutorial, we use the human BRCA2 gene as an example to demonstrate ...
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Reposted by Gencode Genes
Kurianlab @kurianlab.bsky.social · 15/05/2026
So, as translation control is getting popular, please note the newly unified nomenclatures: Translons: a single term for translated regions www.nature.com/articles/s41... Peptideins: translated ORFs lacking sufficient evidence for protein-coding gene status www.nature.com/articles/s41...
nature.com
Translon: a single term for translated regions - Nature Methods
Nature Methods - Translon: a single term for translated regions
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Reposted by Gencode Genes
EMBL-EBI @ebi.embl.org · 03/06/2026
71% That's how many survey respondents say EMBL-EBI enables work that would otherwise be impossible or take much more time and effort. For the community, by the community. From our teams to yours, thank you for championing open data! s.embl.org/EMBL-EBI-202...
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Gencode Genes @gencodegenes.bsky.social · 05/01/2026
The HAVANA team at EMBL-EBI has multiple open positions to support the GENCODE and PARADIGM projects. We're recruiting gene annotators (bit.ly/4qG28g5), an annotation project lead (bit.ly/4qv05v6), and bioinformaticians (bit.ly/4qevYIY). Please apply via the links. We’d love to hear from you!
embl.wd103.myworkdayjobs.com
Genomic Data Analyst
About the Team The HAVANA team, part of Ensembl, produces reference-quality gene annotation for the human and mouse genomes as a core contributor to the GENCODE project, a Global Core Biodata Resource...
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Reposted by Gencode Genes
American Society of Human Genetics (ASHG) @geneticssociety.bsky.social · 17/11/2025
New Webinar: This Wednesday, join speakers Jorge Barista da Rocha, PhD, and Jane Loveland, PhD, as they explore the @ensembl.org genome browser and provide practical skills beyond the traditional reference genome. Register here: bit.ly/432kP4b #ASHG #HumanGenetics @gencodegenes.bsky.social
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Gencode Genes @gencodegenes.bsky.social · 03/09/2025
These new transcripts all have a CDS that is based upon the MANE_Select transcript for the gene, but have unique splicing either within their UTRs or between internal coding exons. Each of these unique splice sites has passed our stringent QC filters to ensure their accuracy.
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Gencode Genes @gencodegenes.bsky.social · 03/09/2025
This release sees the addition of >121000 new full-length human protein-coding transcripts based on long-read RNA-seq data that have been integrated into GENCODE using the TAGENE annotation pipeline.
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Gencode Genes @gencodegenes.bsky.social · 03/09/2025
The latest human GENCODE releases for Human (49) and Mouse (M38), have just been released. They're available via gencodegenes.org and visible in @ensembl genome browser as part of Ensembl 115 ensembl.org
gencodegenes.org
GENCODE - Home page
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Gencode Genes @gencodegenes.bsky.social · 08/05/2025
The GENCODE Primary dataset is now displayed by default for human and mouse in @ensembl.bsky.social. More information about how this set is created is available here: www.gencodegenes.org/pages/gencod... and details on how to change the default display settings here: www.ensembl.info/2025/04/29/d...
gencodegenes.org
GENCODE - The GENCODE Primary transcript set
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Gencode Genes @gencodegenes.bsky.social · 08/05/2025
The latest human GENCODE releases for Human (48) and Mouse (M37), have just been released. They're available via gencodegenes.org and visible in @ensembl.bsky.social genome browser as part of Ensembl 114 ensembl.org
gencodegenes.org
GENCODE - Home page
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Gencode Genes @gencodegenes.bsky.social · 11/12/2024
Can also confirm that intron in 3' UTR does not exclude from MANE consideration - see e.g. BSN (www.ensembl.org/Homo_sapiens...) but for such cases we require evidence of NMD avoidance/functional product in the event of NMD. 2/2
ensembl.org
Gene: BSN (ENSG00000164061) - Summary - Homo_sapiens - Ensembl genome browser 113
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Gencode Genes @gencodegenes.bsky.social · 11/12/2024
@nickywhiffin.bsky.social - HAVANA group here - sorry no reference comes immediately to mind. But we'll do some digging as its a good question! As @iansudbery.bsky.social says, assumption has been that introns in UTR are no different to introns in CDS. 1/2
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Reposted by Gencode Genes
John Prensner @johnprensner.bsky.social · 26/11/2024
Do you want to go further with your proteomics? Looking for something new in cancer? Check out microproteins! Thanks to @science.org for featuring this work, in collaboration with @sebastiaanvheesch.bsky.social, #HUPO, @gencodegenes.bsky.social www.science.org/content/arti... 🔎 microprotein 🧬 💻
science.org
‘Dark proteome’ survey reveals thousands of new human genes
Database confirms that overlooked segments of the genome code for a multitude of tiny proteins
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Gencode Genes @gencodegenes.bsky.social · 21/11/2024
We're pleased to share our GENCODE 2025 NAR database paper: tinyurl.com/3etnfw4j Thanks to all our collaborators, friends and users. This is now the main citation for our resource, and hopefully also a good explanation of how and why we do what we do.
tinyurl.com
GENCODE 2025: reference gene annotation for human and mouse
Abstract. GENCODE produces comprehensive reference gene annotation for human and mouse. Entering its twentieth year, the project remains highly active as n
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Gencode Genes @gencodegenes.bsky.social · 13/11/2024
The GENCODE manual annotation team, part of the Ensembl group at the EMBL-EBI. See our website for our latest gene annotations: www.gencodegenes.org
gencodegenes.org
GENCODE - Home page
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