Fixed Update singularity and docker containers to replace the ones with expired certificates in modules gunzip.nf and unzip_db.nf.

What's Changed Add proteins/magmap.proteins.faa.gz, a protein FASTA of all selected genomes Add Unassigned_NoFeatures/Unassigned_Ambiguity columns to overall_stats.tsv.gz, and run FeatureCounts on...

What's Changed Remove vulnerable PR-comment artifact pattern by @mashehu in #214 Release 1.2.0 by @erikrikarddaniel in #228 Update CHANGELOG for v1.2.0 release date and features by @erikrikarddani...

Added #95 - Accept gzipped input files throughout the pipeline, for every samplesheet column and individual file parameter alike (#76) (by @erikrikarddaniel) Changed #95 - Check the file name ex...

Changed #192 Updated nf-core modules and subworkflows to latest. mgnifam 4.0.0 now also writes a <chunk>_mgnifam_stats.json run summary, saved with the existing --save_iterative_family_metadata, ...

Added #58 Tries to fetch genome annotation from the Ensembl organisms FTP, in addition to Ensembl and NCBI. Fixed #38 Fix bug with species having multiple entries in g:Profiler (like canis lupus...

An in-person hackathon held in Barcelona

Better support for mixed communities and mixed data types. Several ORF callers, including MetaEuk for splice-aware calling in eukaryotes, can now run in one go, together with your own ORFs. Their c...

nf-core/pacvar 1.1.0 - Neon tetra nf-core/pacvar 1.1.0 expands the WGS workflow with major new PacBio long-read analysis capabilities, including copy number variant calling (hificnv), optional sawf...

This release addresses key issues with database files: The inbuilt domain for the eggNOG database has disappeared. The download tool now bypasses that to retrieve files from an alternative source....

v3.0.0 "Tokoroten" - [June 26th 2026] Breaking changes Simplify output file names by removing _aln and _plt. Update all modules to latest versions. Use the default CRAM format from samtools (CRAM ...

An in-person hackathon held in Barcelona

v1.1.2 - 2026-06-03 Added Add param --cluster_with_reference_pool to optionally include the reference pool in the clustering step (#278) (by @nrminor, @Joon-Klaps) Template update to nf-core/tools...

Changed #170 - Updated local modules to versions topic output. (by @vagkaratzas) #171 Updated nf-core modules and subworkflows to latest, removing all remaining ch_versions. (by @vagkaratzas) Upd...

Added #741 Updated to nf-core pipeline template v4.0.2 (added by @sofstam) Fixed #736 Fix MultiQC silently skipping large samtools stats files by increasing log_filesize_limit in MultiQC config ...

v2.0.1 - [2026-06-16] Added Fixed - [#53](https://github.com/nf-core/phyloplace/pull/53) - Improve documentation of columns in input sheets [addresses #41](https://github.com/nf-core/phyloplace/iss...

What's Changed Fix saving of samtools output by @erikrikarddaniel in #178 Fix/bakta gff compatibility by @Laurenz0908 in #181 Template 3.5.2, Nextflow lint and version topic channels by @erikrikar...

The goal is $500,000, which will be used to procure interceptor drones and other air defense equipment.

The British far right has spent fifty years failing to find a leader who looks like he could run the country. Last Thursday, it did. This is Tory 3.0.

The goal is $500,000, which will be used to procure interceptor drones and other air defense equipment.

How an elite clique of math-addled economists hijacked climate policy.

YouTube video by BBC Sounds