Sign in

Avi Flamholz

@flamholz.bsky.social
294 followers 240 following 83 posts

NYC; Lab of Environmental Microbiology @rockefelleruniv.bsky.social

PostsRepliesMedia
Reposted by Avi Flamholz
Harmit Singh Malik @harmitmalik.bsky.social · 06/08/2026
Come be our colleague. I have been in this Division for 27 years (4 as a postdoc and 23 as a PI). It is an amazing place to work, collaborate, and be inspired. If you are applying to be an Assistant or Associate Professor this Fall, don't miss this deadline.
2163152
Avi Flamholz @flamholz.bsky.social · 07/08/2026
Lab Retreat / NYLittle 2.0 with labs of @karnagowda.bsky.social (OSU), Darcy McRose (MIT), and Jane Lucas (Cary)
160
Reposted by Avi Flamholz
Dmitri Petrov @petrovadmitri.bsky.social · 15/07/2026
Cannot be more excited about the lineup for the inaugural Function of Evolving Systems GRC conference I am co-organizing with the amazing Joy Bergelson. Less than a month away: August 9 - 14, 2026. Still a few spots left! And do check out the amazing list of speakers: www.grc.org/function-of-...
grc.org
2026 Function of Evolving Systems Conference GRC
The 2026 Gordon Research Conference on Function of Evolving Systems will be held in Waterville Valley, New Hampshire. Apply today to reserve your spot.
33826
Avi Flamholz @flamholz.bsky.social · 17/06/2026
cen.acs.org/biological-c...
cen.acs.org
How growth-coupled selection could rebuild metabolism
Arren Bar-Even drove a new way to engineer metabolism; his former collaborators and students are continuing the work
020
Avi Flamholz @flamholz.bsky.social · 05/06/2026
Samples from a catchment pond and adjacent river. So different!
230
Reposted by Avi Flamholz
The Rockefeller University @rockefeller.edu · 22/04/2026
This #EarthDay we're featuring Rockefeller's @flamholz.bsky.social, who studies how microbes contribute to #climatechange and how they could offer solutions to this problem via their metabolisms.
the-scientist.com
A Microbiologist Mines Bacterial Metabolism to Tackle Climate Change | The Scientist
Avi Flamholz leverages computational tools and microbial biochemistry to improve climate models and provide novel engineering solutions to address climate change.
0124
Avi Flamholz @flamholz.bsky.social · 24/02/2026
Glad to host Dan Needleman for the Physics and Biology seminar @rockefeller.edu today
030
Avi Flamholz @flamholz.bsky.social · 23/02/2026
Huge thanks to all the folks who work to keep @rockefeller.edu accessible and beautiful during these crazy storms.
Snowy campus; facilities workers shoveling the snow
070
Avi Flamholz @flamholz.bsky.social · 27/01/2026
Super glad to host Rico Rojas from NYU @rockefeller.edu today — he gave a thought provoking talk on the mechanical properties of the gram positive cell wall.
070
Avi Flamholz @flamholz.bsky.social · 27/01/2026
Critical mass achieved!
090
Avi Flamholz @flamholz.bsky.social · 08/01/2026
Was great to host @deepakkrish.bsky.social at @rockefeller.edu this week. Thanks for the conversation and phenomenal talk.
091
Reposted by Avi Flamholz
Alex Crits-Christoph @acritschristoph.bsky.social · 24/12/2025
All you want for christmas is.... transposon mutagenesis! Our new work at @cultivarium.bsky.social screening lots of transposon vectors in lots of bacteria, from @charliegilbert.bsky.social and team. Transposon and promoter modular parts available on Addgene (pooled library will be there soon too)
Figure 2. Himar1 transposon variant screen on a cohort of 92 bacterial species.
18432
Avi Flamholz @flamholz.bsky.social · 18/12/2025
Thanks to @yairmau.com for the pics
020
Avi Flamholz @flamholz.bsky.social · 15/12/2025
Heading to #AGU25 tomorrow to talk about continuum models of SOC in session B32B Weds morning. Hope to see some friends there. agu.confex.com/agu/agu25/me...
agu.confex.com
Statistical approaches to soil carbon dynamics
Terrestrial ecosystems absorb ≈30% of anthropogenic CO2 emissions in a process ...
020
Avi Flamholz @flamholz.bsky.social · 04/12/2025
This is pretty great.
010
Avi Flamholz @flamholz.bsky.social · 26/11/2025
The Anthropocene
010
Avi Flamholz @flamholz.bsky.social · 25/11/2025
Glad to see this beautful work from Daniel Amador-Noguez’s group is out now. journals.asm.org/doi/10.1128/...
journals.asm.org
Thermodynamics shapes the in vivo enzyme burden of glycolytic pathways | mBio
Cells regulate metabolic fluxes to balance energy production, biosynthesis, and the efficient use of limited resources, including the finite capacity for synthesizing and maintaining metabolic enzymes...
011
Reposted by Avi Flamholz
Cary Institute of Ecosystem Studies @caryinstitute.bsky.social · 17/11/2025
On Thu, Nov 20 @ 11am ET, join us for a virtual science seminar with @rockefeller.edu's @flamholz.bsky.social: Statistical Approaches to Soil Carbon Dynamics. Free + open to all. #ecology Register: www.eventbrite.com/e/statistica...
022
Avi Flamholz @flamholz.bsky.social · 14/11/2025
Rockefeller / MSK theory lunch #3 — Chromatin as a memory machine with Dr Jeremy Owen
010
Reposted by Avi Flamholz
Quanta Magazine @quantamagazine.org · 07/11/2025
Every cubic meter of air contains anywhere from 10 to 10 million microbes, depending on the altitude, location, season and time of day. At an observatory Watop Puy de Dôme, a 4,800-foot inactive volcano in France, microbiologists sample the aeromicrobiome.
quantamagazine.org
Microbes Also Change the Climate. Could That Help Us? | Quanta Magazine
A collection of short dispatches from the field of climate microbiology conveys the contributions that single-celled life forms make to our climate system, and how we can work with them to address…
1227
Reposted by Avi Flamholz
Tristan Caro @tacaro.bsky.social · 26/09/2025
The vast majority of permafrost exists in the subsurface. What happens when this deep, ancient permafrost thaws? How fast does it take microbial communities to "wake up"? This project now published in JGR, with @isotopes.bsky.social , @kopflab.bsky.social , et al., aims to address that question!
agupubs.onlinelibrary.wiley.com
Microbial Resuscitation and Growth Rates in Deep Permafrost: Lipid Stable Isotope Probing Results From the Permafrost Research Tunnel in Fox, Alaska
Microbial growth is extremely slow within the first 30 days of thaw. Temperature may drive which taxa are active, but not growth rates Subsurface microbes preferentially produce glycolipids over ...
0176
Avi Flamholz @flamholz.bsky.social · 15/09/2025
Congrats to Jan, Sean and the whole Brady lab crew.
010
Reposted by Avi Flamholz
The Rockefeller University @rockefeller.edu · 08/09/2025
Applications are now open for September 2026 enrollment in The David Rockefeller Graduate Program in Bioscience. Join a vibrant community of scientists pushing the boundaries of discovery. Learn more here: www.rockefeller.edu/education-and-t…
001
Avi Flamholz @flamholz.bsky.social · 29/08/2025
Pretty strong case for open review processes.
030
Reposted by Avi Flamholz
Chikae Tatsumi @chikaetatsumi.bsky.social · 20/08/2025
OIST is hiring Open-Rank Faculty!! This call is open to several fields, including Ecology, Environmental Science, and Earth Science🌏🌳🐦🐟🐝🦠 Come be part of a truly diverse and inspiring community!!
121
Reposted by Avi Flamholz
Typas Lab @typaslab.bsky.social · 12/08/2025
EMBL is back on hiring faculty! Check out the multiple open positions: 3 PIs- 2 in Heidelberg incl. our Molecular Systems Biology Unit, 1 in Grenoble 1 Head of Unit (Cell Biology & Biophysics, Heidelberg). Closing deadlines in Sep! +3 more positions to come out then, stay tuned... @embl.org
02024
Reposted by Avi Flamholz
Carrie Wessinger @carriewessi.bsky.social · 12/08/2025
Please repost and amplify ! We are hiring a faculty position in Evolutionary Genetics in the Biology Department at U of South Carolina! Check us out and come be our colleague! sc.edu/study/colleg... Deadline for applications is Oct 1 #AcademicJobs #EvoBio
sc.edu
Assistant Professor position in Evolutionary Genetics - Department of Biological Sciences | University of South Carolina
072119
Reposted by Avi Flamholz
Anny Chung (鍾彥儀) @yyachung.bsky.social · 21/08/2025
🍄 UGA Plant Pathology is hiring TT faculty in Mycology/Fungal Biology/Fungal Ecology at the Asst/Assc level! Please pass along this opportunity to anyone you know who may be interested. I'm on the search committee and happy to answer questions. 🍄 www.ugajobsearch.com/postings/445...
ugajobsearch.com
Assistant or Associate Professor - Fungal Biology/Mycology
The Department of Plant Pathology in the College of Agricultural and Environmental Sciences (CAES) at the University of Georgia is recruiting for the position of Assistant or Associate Professor in Fu...
12034
Reposted by Avi Flamholz
riceeeps.bsky.social @riceeeps.bsky.social · 28/08/2025
⁉️ Are you our next faculty member? The Department of Earth, Environmental and Planetary Sciences at Rice University, seeks applications for a tenure-track assistant professor position. Learn more or apply by October 15th: eeps.rice.edu/eeps-job-opp...
Picture of students and professor on rocky terrain. EEPS logo with text "Join our team apply by october 15th"
013
Reposted by Avi Flamholz
Julia McHugh @drjmchugh.bsky.social · 29/08/2025
Full-time, 9-month, Tenure-track Assistant Professor in Paleoclimatology position at the University of Hawaii. www.indeed.com/viewjob?jk=4...
indeed.com
Assistant Professor in Paleoclimatology - Honolulu, HI - Indeed.com
University of Hawaii
02719
Reposted by Avi Flamholz
Anthony Vecchiarelli @cellforganized.bsky.social · 26/08/2025
My MCDB dept is accepting applications for a faculty position at the Assistant Professor level! Applications Due by October 15, 2025 We welcome applications from all areas of physiology and neuroscience, spanning molecular, cellular, systems, and organismal levels. lsa.umich.edu/mcdb/news-ev...
lsa.umich.edu
MCDB Opens Search for Faculty | U-M LSA Molecular, Cellular, and Developmental Biology (MCDB)
MCDB welcomes applications at the Assistant Professor level from outstanding biological scientists in all areas of physiology and neuroscience, spanning molecular, cellular, systems, and organismal le...
04854
Reposted by Avi Flamholz
Jennifer Landino @jenelandino.bsky.social · 27/08/2025
Dartmouth is hiring! Come be my colleague. Biochemistry and Cell Biology is accepting applications for a tenure-track Assistant Professor position. Join us in New Hampshire for great science, nice people, and beautiful scenery ⛰️ apply.interfolio.com/171438
12416
Reposted by Avi Flamholz
Yale Center for Natural Carbon Capture @yalecncc.bsky.social · 29/08/2025
📢📢📢 The Yale Dept. of Earth & Planetary Sciences has opened a search for YCNCC Faculty and Asst/Assoc/Professor with a focus on marine and other geochemical CDR. 🌊🌊🌊 🪨🪨🪨 Details via the below link. Candidate review begins 10/1. Please share widely!! naturalcarboncapture.yale.edu/about/opport...
067
Avi Flamholz @flamholz.bsky.social · 20/08/2025
something I've learned starting a lab and advertising RA positions -- so many talented, motivated, educated young scientists out there looking for work
010
Avi Flamholz @flamholz.bsky.social · 20/08/2025
FYI -- www.rockefeller.edu/our-scientis...
rockefeller.edu
Faculty recruitment - Our Scientists
010
Avi Flamholz @flamholz.bsky.social · 14/08/2025
Lab retreat time
050
Avi Flamholz @flamholz.bsky.social · 11/08/2025
Congrats to Albert (2nd pic) on a great poster culminating a summer of thoughtful work. Only 2 weeks left!
010
Reposted by Avi Flamholz
Danny Colligan @dannycolligan.bsky.social · 25/07/2025
In my review of Spears and Geruso's book "After the Spike" for Jacobin, I attempt to confront what I consider the core of their argument, which is why declining global population would be undesirable, and I find their arguments unpersuasive. jacobin.com/2025/07/demo...
jacobin.com
Why Should We Worry About Declining Birth Rates?
Declining birth rates around the world may pose new challenges for humanity. A new book on the topic by Elon Musk–funded economists indulges in questionable philosophy and sci-fi speculation that fail...
186
Avi Flamholz @flamholz.bsky.social · 23/07/2025
calibration of calorimetry to chemical oxidant demand seems pretty useful and significant www.sciencedirect.com/science/arti...
sciencedirect.com
Chemical Oxygen Demand Can Be Converted to Gross Energy for Food Items Using a Linear Regression Model
Human and microbial metabolism are distinct disciplines. Terminology, metrics, and methodologies have been developed separately. Therefore, combining …
020
Avi Flamholz @flamholz.bsky.social · 18/07/2025
Congrats @kiseokmicro.bsky.social
010
Avi Flamholz @flamholz.bsky.social · 16/07/2025
Amazing opportunity
011
Avi Flamholz @flamholz.bsky.social · 02/07/2025
Join us! A few more days to register.
040
Avi Flamholz @flamholz.bsky.social · 30/06/2025
Seems to me the problem with AI + teaching is evaluation and not learning
020
Avi Flamholz @flamholz.bsky.social · 24/06/2025
@rockefelleruniv.bsky.social I heard a rumor that Gunther Blobel had some kumquat trees in RRB — does anyone know if they are still alive?
110
Avi Flamholz @flamholz.bsky.social · 24/06/2025
At least ranked choice makes it clear how ignorant we are about correlations
000
Avi Flamholz @flamholz.bsky.social · 24/06/2025
Today in NYC — a city with ~5mil registered voters — we’re making news out of polls with 800 respondents.
100
Avi Flamholz @flamholz.bsky.social · 22/06/2025
Apparently @rockefelleruniv.bsky.social has a greenhouse.
150
Avi Flamholz @flamholz.bsky.social · 12/06/2025
lab website is up www.rockefeller.edu/research/198...
rockefeller.edu
Laboratory of Environmental Microbiology - Research
We study & engineer the roles of microbes in the global carbon cycle. Some projects in our group are motivated by engineering goals, aiming to build carbon negative technologies using autotrophic (CO2...
060
Reposted by Avi Flamholz
SeppeKuehnLab @seppekuehnlab.bsky.social · 17/05/2025
youtu.be/6ZHWIYHlXOs?...
youtu.be
Land of Hope and Dreams
YouTube video by Bruce Springsteen
021
Avi Flamholz @flamholz.bsky.social · 13/05/2025
of course my "responsible conduct of research" course starts with IP protection yet again (3rd institution). quite a moral vacuum we built in american science
000