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陳昱嘉 Yu-Chia Chen

@evodevo-tw.bsky.social
251 followers 170 following 4 posts

Development x Evolution x Gene Regulation Curious biologist from Taiwan PhD candidate in the Harris Lab BBS program @HarvardMed Basketball addict | he, him, his

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Reposted by 陳昱嘉 Yu-Chia Chen
Carrie Adler @carrieadler.bsky.social · 17/04/2025
👇👇👇 New preprint dropped! Where we dive deep into the factors that restrict pluripotent stem cells to make the RIGHT cell types in the RIGHT place in planarians. Many surprises in this very exciting story. @kuangtse.bsky.social
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陳昱嘉 Yu-Chia Chen @evodevo-tw.bsky.social · 18/04/2025
New preprint alert! 🚨 Check out this awesome highlight thread by @kuangtse.bsky.social -- How does a pluripotent stem cell differentiate into the correct cell type at the right location? 🧐
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Zebrafish Rock! @zebrafishrock.bsky.social · 15/12/2024
Full spectrum of ‘zebrabow’ embryos. Credit to @jhenninger.bsky.social. #ZebrafishZunday 🧪
Line of zebrabow embryos that have different colors based on the cell lineage. They are sorted by color to form a rainbow.
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Dorothee Bornhorst-Ohmstede @dorotheeb.bsky.social · 06/12/2024
It’s time for another #FluorescenceFriday! 👩‍🎨🎨🔬🫀multi-color labeled zebrafish heart with mosaic expression of diverse myl7:color plasmids 🏳️‍🌈🌈
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Rita Strack @ritastrack.bsky.social · 02/12/2024
Nice paper from Jenn Prescher and colleagues on tags for bioluminescence imaging of RNAs. www.nature.com/articles/s41...
nature.com
A modular platform for bioluminescent RNA tracking - Nature Communications
Studying RNA dynamics in vivo often relies on fluorogenic approaches, but these can be hampered by factors such as limited sensitivity and sample autofluorescence. Here, the authors describe an ultras...
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bioRxiv Genomics @biorxiv-genomic.bsky.social · 02/12/2024
Identification and developmental profiling of microRNAs in the acoel worm Hofstenia miamia www.biorxiv.org/content/10.1101/202…
biorxiv.org
Identification and developmental profiling of microRNAs in the acoel worm Hofstenia miamia https://www.biorxiv.org/content/10.1101/2024.12.01.626237v1
The acoel worm Hofstenia miamia (H. miamia) has recently emerged as a model organism for studying wh
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Reposted by 陳昱嘉 Yu-Chia Chen
Moita Lab @moitalab.bsky.social · 02/12/2024
Thrilled to present our latest BioRXiv on brain/body interactions during defensive freezing behaviour! (www.biorxiv.org/content/10.1...). You might think that a frozen animal has, well, frozen muscle activity, right? Wrong! Underneath the still surface of a fly, something in the legs is beating… 🧵
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John Wallingford @jbwallingford.bsky.social · 02/12/2024
Welcome to the #devbiolwriteclub Bluesky Boot Camp! I’ll be posting here regularly with thoughts and exercises to help scientists become better writers. Let’s start by managing expectations: I will NOT help you write better. I WILL help you become a better writer. 🧵 1/10
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Kory Evans Ph.D @sternarchella.bsky.social · 28/11/2024
During thanksgiving, I sometimes wish that I was a slingjaw wrasse. They can extend their jaws 1/3 of their entire body length. Perfect for getting seconds without standing up. We printed one today from a specimen we collected in Okinawa
Slingjaw wrasse ink print with damselfishesSlingjaw wrasse print with jaws extended
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Nat Clarke @natclarke.bsky.social · 27/11/2024
I’m delighted to share that I will be starting my lab @univmiami.bsky.social in Spring 2025! We will study cellular and developmental biology in non-bilaterian animals – cnidarians, ctenophores, placozoans, and sponges – to explore early animal evolution.
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Mitch Guttman @mitchguttman.bsky.social · 27/11/2024
Gene regulation involves thousands of proteins that bind DNA, yet comprehensively mapping these is challenging. Our paper in Nature Genetics describes ChIP-DIP, a method for genome-wide mapping of hundreds of DNA-protein interactions in a single experiment. www.nature.com/articles/s41...
nature.com
ChIP-DIP maps binding of hundreds of proteins to DNA simultaneously and identifies diverse gene regulatory elements - Nature Genetics
ChIP-DIP (ChIP done in parallel) is a highly multiplex assay for protein–DNA binding, scalable to hundreds of proteins including modified histones, chromatin regulators and transcription factors, offe...
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Igor Adameyko @adameykolab.bsky.social · 25/11/2024
(1) How can we build complex structures from a limited set of progenitors and cell types? In our new preprint, we describe patterns of cell fate decisions during early development and (in some cases) identify molecular correlates of different behaviors. www.biorxiv.org/content/10.1...
biorxiv.org
Unbiased profiling of multipotency landscapes reveals spatial modulators of clonal fate biases
Embryogenesis is commonly viewed through a tree model of cell differentiation, which does not adequately represent the spatiotemporal modulation of cell multipotency underlying morphogenesis. Here we ...
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Reposted by 陳昱嘉 Yu-Chia Chen
Dichromat Chloe (4% of scientists) @dichromat-chloe.bsky.social · 25/11/2024
(please amplify) 4% of scientists face an important barrier to an the ENTIRE FIELD of single-cell genomics and here is why
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Natasha O'Brown @natashaobrown.bsky.social · 22/11/2024
#NewPI achievement unlocked: the first #obrownlab publication is officially accepted (🍾) about #zebrafish #glia (green) and the vasculature (magenta). Thanks to our reviewers and congrats to all of the lab members! What a great 1st paper experience. Happy #fluorescencefriday ya'll!
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Julien Richard Albert @jrichardalbert.bsky.social · 24/11/2024
Another go-to graph for "AHA!" moments: phylogenetic trees. This @embl.org hosted interactive tree viz tool is intuitive and so so so customizable.
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陳昱嘉 Yu-Chia Chen @evodevo-tw.bsky.social · 24/11/2024
I heard that today is #Caturday 🐱
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The Lewis Lab @peterlewislab.bsky.social · 19/11/2024
"Dark TFs": new manuscript mapped 166 uncharacterized human transcription factors, finding half bind genomic "dark matter," often closed chromatin rich in transposable elements. www.biorxiv.org/content/10.1...
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Evgeny Kvon @evgenykvon.bsky.social · 22/11/2024
In this review @gracebower.bsky.social & I discuss recent evidence showing that, unlike canonical enhancers, long-range enhancers located hundreds of kb from their targets rely on additional mechanisms to ensure robust gene activation during mammal development. www.sciencedirect.com/science/arti...
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Laurent Formery @laurentformery.bsky.social · 23/11/2024
Calcein staining showing the skeleton on the aboral side of a juvenile sea star (Patiria miniata) Everything looks better with a rainbow LUT 🌈😊 #microscopy #echinoderms #fluorescence
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Max Heiman @heiman.bsky.social · 22/11/2024
"A picture contains 1,000 projects." Acrobeles roundworm head, photo by Kaiden Power @wormkaiden.bsky.social How many open questions about ECM patterning can you find in these pictures?
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zack chiang @zchiang.bsky.social · 11/11/2024
7 years ago, I met a junior fellow named Jason Buenrostro who blew me away with a vision of futuristic genomic technologies Today, we (Ajay Labade, Caroline Comenho) are excited to share our first steps into that future: Expansion in situ genome sequencing 1/
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陳昱嘉 Yu-Chia Chen @evodevo-tw.bsky.social · 23/11/2024
Cell division is NOT a must for differentiation during early zebrafish embryogenesis. www.nature.com/articles/s41...
nature.com
Cell state transitions are decoupled from cell division during early embryo development - Nature Cell Biology
Kukreja et al. show that blocking cell division in zebrafish does not affect differentiation of major cell types during gastrulation and segmentation, but it does decelerate differentiation of particu...
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PG Sanchez 🇵🇭🏳️‍🌈 (siya) @poljiology.bsky.social · 22/11/2024
For not quite #FluorescenceFriday, here are pluteus larvae of sea urchin under polarized light 👾🚀
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Sofia de Oliveira, Ph.D. @sdeoliveira.bsky.social · 23/11/2024
#FluorescentFriday #Zebrafish Visualization of neutrophil migration kinetics after tailfin wound at a whole animal scale. We need more research done at a whole-animal scale... so much we don't ask because we're just looking at the small local wound under the 🔬
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Kim Cooper @ucsdcooperlab.bsky.social · 21/11/2024
Excited to share work that @ceriweber.bsky.social started and drove in my lab. Tails!! We know a lot about limb bone growth, but vertebrae have completely different embryonic and evolutionary origins. What controls growth and proportion in the vertebral skeleton? www.biorxiv.org/content/10.1...
biorxiv.org
Cellular and molecular mechanisms that shape the development and evolution of tail vertebral proportion in mice and jerboas
Despite the functional importance of the vertebral skeleton, little is known about how individual vertebrae elongate or achieve disproportionate lengths as in the giraffe neck. Rodent tails are an abu...
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Rebecca R Helm @rebeccarhelm.bsky.social · 20/11/2024
Baby flounder have an eye on each side, BUT as the flounder grows the eye 'wanders'. First creeping up slowly, then cresting the skull as a living eyeball hat. From there it tumbles to the other side, reshaping bone & muscle, & the fish goes flat 📸Jonathan Jarrell www.facebook.com/groups/26060...
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Teif lab @teiflab.bsky.social · 20/11/2024
Single-molecule states link transcription factor binding to gene expression www.nature.com/articles/s41...
nature.com
Single-molecule states link transcription factor binding to gene expression - Nature
A study uses single-molecule footprinting to measure protein occupancy at regulatory elements on individual molecules in human cells and describes how different properties of transcription factor bind...
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Armita R. Manafzadeh @armanafzadeh.bsky.social · 20/11/2024
Thrilled to share: out in @natureportfolio.bsky.social (!) just in time for Thanksgiving, the dinosaurian history of how your turkey does the twist. Fibular reduction enabled mid-drumstick mobility, unlocking extreme knee long-axis rotation in theropods 🍗🦖🧵 www.nature.com/articles/s41586-024-08251-w
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Kim Cooper @ucsdcooperlab.bsky.social · 19/11/2024
Please read and share this ⬇️ journals.biologists.com/dev/article/...
journals.biologists.com
The case against simplistic genetic explanations of evolution
Summary: Extreme traits in animals, from the origin of limbs to the loss of tails, capture public attention. This Review argues that scientists should not seek simple explanations for how they evolved...
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Dr. Solomon David @solomonrdavid.bsky.social · 18/11/2024
Enjoy some Bluesky positive vibes (sound on👍) from these juvenile Lake Sturgeon @garlab.bsky.social!
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Michel Cayouette @michelcayouette.bsky.social · 18/11/2024
Our latest work is out!! Short thread below. www.cell.com/developmenta...
cell.com
Identification of a non-canonical planar cell polarity pathway triggered by light in the developing mouse retina
Housset et al. show that basal bodies of cone photoreceptors in the mouse retina are planar polarized in a light-dependent manner by the action of transducin and G-protein-signaling modulator protein ...
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Itai Yanai @itaiyanai.bsky.social · 17/11/2024
Too often we spend only two weeks choosing a problem and then many years trying solving it, but this limits our potential impact. A must read for PhD students: Problem choice and decision trees in science and engineering. pubmed.ncbi.nlm.nih.gov/38608651/
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Laurent Formery @laurentformery.bsky.social · 17/11/2024
Shamelessly taking advantage of the bluesky migration to share again some of my favorite echinoderm pics 😀🤩 🔽 Acetylated tubulin (nerves and cilia) and phalloidin (muscles) stains in a juvenile sea urchin (Paracentrotus lividus) just after metamorphosis ⭐
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Denis Wirtz @deniswirtz.bsky.social · 17/11/2024
Download our database of 492 (!) funding opportunities for EARLY-CAREER FACULTY AND RESEARCHERS. For each entry, we provide link to funder, description, amount, deadline, and eligibility criteria (e.g. citizenship). Download freely here: research.jhu.edu/rdt/funding-...
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Joyce Yu @joyceyu.bsky.social · 09/11/2024
Do you work in #DevBio and want to introduce the fascinating world of developmental biology to your family and friends? You can show them this science documentary, produced by the British Society for Developmental Biology, The Company of Biologists and Cambridge Filmworks! 📽️ youtu.be/avrmIs3vPUQ?...
youtu.be
BSDB - The Fascinating World of Developmental Biology (full length)
YouTube video by The Company of Biologists
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bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 17/11/2024
Unbiased profiling of multipotency landscapes reveals spatial modulators of clonal fate biases www.biorxiv.org/content/10.1101/202…
biorxiv.org
Unbiased profiling of multipotency landscapes reveals spatial modulators of clonal fate biases https://www.biorxiv.org/content/10.1101/2024.11.15.623687v1
Embryogenesis is commonly viewed through a tree model of cell differentiation, which does not adequa
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Dr. B. Duygu Özpolat (she/her) @biyolokum.bsky.social · 17/11/2024
I make pottery pieces, often dishes, of animals I love. This is the nudibranch Hypselodoris confetti. It is one of the largest pieces I made so far (about 13 inches / 35 cm long). Reference photo by Alex Mustard #handbuiltpottery #ceramicart #SciArt #invertebrates #Nudivember #nudibranchs
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闵娅(Min Ya; Minya) PhD @minyaaa.bsky.social · 16/11/2024
*Highly recommend* a simple plug in called Color Oracle: colororacle.org It’s a free color blindness simulator. Just one click, it shows you in real time what people with common color vision impairments will see on your screen. I use it to doublecheck everything! #microscopy #figures #academicsky
colororacle.org
Color Oracle | Color Oracle
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Laurent Formery @laurentformery.bsky.social · 17/10/2024
So happy to see this picture of the nervous system in a transparent Henricia sea star selected as an image of distinction by @NikonSmallWorld !! 😎 It was imaged using the see-star clearing protocol developped with @Nat Clarke ⬇️Check the paper here: link.springer.com/article/10.1...
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Alex de Mendoza @alexdemendoza.bsky.social · 14/11/2024
SOX and POU are crucial Transcription Factors in animal development, believed to be innovations of this group. Here we find them in unicellular relatives of animals. And hold tight, you can use a choanoflagellate 🦠 SOX gene to make a full chimeric 🐁 ! Read more here 🧵: rdcu.be/d0dPN 1/6
rdcu.be
The emergence of Sox and POU transcription factors predates the origins of animal stem cells
Nature Communications - The pluripotency program is maintained by transcription factors from the Sox and POU families. Here they identify SOX and POU factors from unicellular relatives of animals...
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