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Eric Strobel

@estrobel.bsky.social
744 followers 261 following 24 posts

Transcriptional acrobatics. Assistant Professor at the University at Buffalo.

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Eric Strobel @estrobel.bsky.social · 06/06/2025
Check out our new preprint in which we teamed up with the Walter and Chen labs to determine how transcription coordinates the folding and function of a tandem aptamer glycine riboswitch from B. subtilis: www.biorxiv.org/content/10.1...
biorxiv.org
Co-transcriptional folding orchestrates sequential multi-effector sensing by a glycine tandem riboswitch
Riboswitches are non-coding RNA motifs that regulate gene expression in response to ligand binding. The glycine tandem riboswitch (GTR) is notable because it comprises two distinct glycine aptamers th...
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Eric Strobel @estrobel.bsky.social · 05/06/2025
Our paper describing a method for measuring cotranscriptional RNA folding using high-throughput RNA chemical probing is out @natcomms.nature.com!
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Eric Strobel @estrobel.bsky.social · 01/05/2025
Tool - 10,000 Days and Fear Inoculum both qualify.
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Reposted by Eric Strobel
Leo Schärfen @leoschaerfen.bsky.social · 26/03/2025
Here is our paper showing in vivo folding of nascent RNA right after synthesis, published now in @cp-molcell.bsky.social! With @karlaneugebauer.bsky.social, @isaac-vock.bsky.social, @mattdsimon.bsky.social www.cell.com/molecular-ce...
cell.com
Rapid folding of nascent RNA regulates eukaryotic RNA biogenesis
Schärfen et al. develop a method to measure the structure of nascent RNAs during their synthesis by RNA polymerases. Base pairing occurs rapidly in cells, revealing the strong regulatory potential of ...
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Karla Neugebauer @karlaneugebauer.bsky.social · 26/03/2025
I'm excited to share our latest publication on co-transcriptional RNA folding in a eukaryote! Great work by Leo Schärfen with collaboration from Isaac Vock and Matt Simon! @leoschaerfen.bsky.social @mattdsimon.bsky.social Take a peek here authors.elsevier.com/a/1kpxo_Oylr...
authors.elsevier.com
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Karla Neugebauer @karlaneugebauer.bsky.social · 26/03/2025
I'm excited to share our latest publication on co-transcriptional RNA folding in a eukaryote! Great work by Leo Schärfen with collaboration from Isaac Vock and Matt Simon! @leoschaerfen.bsky.social @mattdsimon.bsky.social Here is the link that works! authors.elsevier.com/a/1kpxo_Oylr...
authors.elsevier.com
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Eric Strobel @estrobel.bsky.social · 14/03/2025
Yup. I use SABIAN cymbals and inquired about getting some prototypes through SABIAN's Sound Check program in January. I was told that the program was on hold for the US until the uncertainty regarding tariffs is resolved. Glad I'm already set up with all the catalog cymbals I want for now...
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Reposted by Eric Strobel
Nell Henderson @nellhenderson.bsky.social · 13/03/2025
BOOM! US tariffs could crash the market for North American drummers, writes PIIE's Cullen Hendrix www.piie.com/blogs/realti...
piie.com
US tariffs could crash the market for North American drummers
North America’s two largest cymbal producers share a family lineage and approaches to cymbal making. What they don’t share is a country of origin. One is US-based, the other Canadian. The similarities...
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Eric Strobel @estrobel.bsky.social · 10/03/2025
Our paper describing our Transcription Elongation Complex Display platform for high-throughput cotranscriptional RNA functional assays is now online at @naturecomms.bsky.social: www.nature.com/articles/s41.... We used TECdisplay to assess the activity of >1M ZTP riboswitch variants!
nature.com
Systematic analysis of cotranscriptional RNA folding using transcription elongation complex display - Nature Communications
Understanding how RNA folds into functional structures requires methods that can systematically assess how sequence perturbations affect RNA structure and function. Here, the authors develop a broadly...
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Reposted by Eric Strobel
Dave Shechner @shechnerlab.bsky.social · 21/11/2024
It's my great pleasure to present the next big preprint from SheqLab! An exciting application of our O-MAP platform that I hope will transform the study of nuclear architecture. If you've ever wanted to dissect the subnuclear "neighborhood" around an individual locus, read on! (1/30)
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Catherine Eichhorn @cdeichhorn.bsky.social · 18/11/2024
I haven't seen a nucleic acids starter pack yet, so I started one! Please reach out if I missed you! go.bsky.app/NxKgUY5
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Eric Strobel @estrobel.bsky.social · 26/12/2023
Our latest preprint, led by Skyler Kelly: we developed a platform for high-throughput cotranscriptional RNA biochemistry called Transcription Elongation Complex display. www.biorxiv.org/content/10.1...
biorxiv.org
Systematic analysis of cotranscriptional RNA folding using transcription elongation complex display
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
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Eric Strobel @estrobel.bsky.social · 29/11/2023
The final version of our article describing a modernized procedure for cotranscriptional RNA structure probing is online! www.nature.com/articles/s41...
nature.com
Observation of coordinated RNA folding events by systematic cotranscriptional RNA structure probing ...
RNA begins to fold as the nascent transcript emerges from a transcribing RNA polymerase. Here, the authors develop a concise method for mapping RNA folding pathways that couples in vitro transcription...
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Eric Strobel @estrobel.bsky.social · 19/09/2023
Paper data for an assay I dreamed up in 2018 👀
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