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Dr. Carly Kenkel

@drcarl.bsky.social
2.1K followers 476 following 61 posts

PI of the Cnidarian Evolutionary Ecology Lab at the University of Southern California working on EcoEvo, plasticity, genomics, climate change, symbiosis, coral

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Reposted by Dr. Carly Kenkel
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 04/10/2026
I have modernized and enhanced the NSF COA generator tool. Results now update dynamically • Published under more than one name? Covered! • Other people share your name? No problem! • You prefer searching by ORCID? Go ahead! Give it a try. Feedback, bug reports, feature requests are MOST welcome! 🧪
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Dr. Carly Kenkel @drcarl.bsky.social · 23/09/2026
🧪Channeling my critical old lady energy to some purpose - don't come to my house and tell me coral reefs are doing fine! www.latimes.com/opinion/lett...
latimes.com
Letters to the Editor: In the Great Barrier Reef, coral quantity shouldn’t be mistaken for quality
'A recently burned forest where young trees have regrown is not equivalent to one filled with mature redwoods. The same is true for reefs,' writes an L.A. Times reader.
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Reposted by Dr. Carly Kenkel
Dr. Paige Duffin @paigeduffin.bsky.social · 10/09/2026
Hi, Bluesky! Ecstatic my inaugural post gets to be one where I share the news that my dissertation chapter on ochre star pop genomics has finally been published!! ⭐ 🍾 🧬
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Reposted by Dr. Carly Kenkel
Dr. Paige Duffin @paigeduffin.bsky.social · 14/09/2026
I’m excited to share the 🌷🪻 "meadow plot" 🌻🌷, a new pop genomics visualization tool I created to ID putative selective sweeps across the genome using windowed π & FST estimates from pixy. User-friendly tutorial here: paigeduffin.github.io/meadow_plot_... Please help spread the word by sharing! 🧬
paigeduffin.github.io
Meadow Plot Tutorial
A step-by-step tutorial for creating meadow plots and candidate peak summaries from pixy output.
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Reposted by Dr. Carly Kenkel
Genetics Society of America @genetics-gsa.bsky.social · 17/07/2026
What does it really take to land a faculty position? @jazlynmooney.bsky.social shares insights on preparing competitive applications, navigating interviews, building a research vision, and more. 🔗: buff.ly/nLWXT9m
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Reposted by Dr. Carly Kenkel
Dr. Katie Glover (she/her) #BLM @katieglover.bsky.social · 18/07/2026
Please share! This fully-funded postdoc position at the UCLA La Kretz Center allows candidates to design their own projects in California conservation, and offers mentorship from both academics and conservation practitioners. drive.google.com/file/d/1K2Qi...
drive.google.com
LKC 2027 Postdoctoral Fellowship.pdf
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Reposted by Dr. Carly Kenkel
Matt Gibson @mgstowers.bsky.social · 17/07/2026
Postdoc Positions: Coral Cell and Molecular Biology Reach out directly to mg2@stowers.org or follow the link below to read more and apply through the institute portal! Postdoctoral Research Associate - REQID0002557 www.stowers.org/careers/post...
stowers.org
Postdoctoral Research Associate - REQID0002557
If you have a collection of outstanding people who ask really interesting questions, like each other and push the envelope, important discoveries will…
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Reposted by Dr. Carly Kenkel
Jacquelyn Gill @jacquelyngill.bsky.social · 18/06/2026
Don’t forget to take action on the proposed OMB rules! Public comments, contacting your societies or environmental nonprofits, contacting your Congresspeople, etc.
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Dr. Carly Kenkel @drcarl.bsky.social · 16/06/2026
Aspiring Eco-Evo PhD students - check out the Simons Graduate Fellowships! it's a full ride!! 🧪https://www.simonsfoundation.org/grant/simons-graduate-fellowships-in-ecology-and-evolution/
simonsfoundation.org
Simons Graduate Fellowships in Ecology and Evolution
The purpose of these awards is to provide support for students entering U.S.-based Ph.D. programs with a plan to perform research in ecology and evolution. While we will consider all projects in ecolo...
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Reposted by Dr. Carly Kenkel
Dr. Dawn Wright @deepseadawn.bsky.social · 05/06/2026
resist.bot/petitions/PT... 🌊 🦑
resist.bot
Save the Ocean Observatories Initiative (OOI)
Join 1 people. Please help STOP the destruction of the Ocean Observatories Initiative (OOI) by this lawless administration, and all this while Hurricane Season… Sign and Resistbot delivers your letter...
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Dr. Carly Kenkel @drcarl.bsky.social · 03/06/2026
The list of Ecology/Evolution/Marine Bio Labs recruiting grad students for Fall 2027 is live! PIs enter your position info here: forms.gle/MAGd4ohyPeoY... students (and PIs not recruiting) share the composite list: docs.google.com/spreadsheets... Please share widely! 🧪
forms.gle
Ecology/Evolution/Marine Biology labs recruiting for Fall 2027
Please complete this form if you are a PI recruiting graduate students for a Fall 2027 start. If you are NOT recruiting, feel free to share the response sheet with prospective students looking for lab...
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Dr. Carly Kenkel @drcarl.bsky.social · 03/06/2026
🧪Calling all Americans who value science - this OMB rule will crush independent science - its essential that you comment by July 13 to voice your concerns open.substack.com/pub/elizabet...
open.substack.com
Summary of Key Changes in OMB’s Proposed Federal Financial Assistance Rule
Russell Vought is going to destroy American Science
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Reposted by Dr. Carly Kenkel
Dr. Sandra Steingraber 🏳️‍🌈 @ssteingraber1.bsky.social · 04/05/2026
🧪 FIRST STUDY to compare direct air capture of CO2 vs renewables: “An amount of money spent deploying wind or solar delivers more combined climate and public health benefit than if it is spent on DAC.” Releasing CO2 into air and then trying to suck it up is dumb. techxplore.com/news/2026-05...
techxplore.com
Renewable energy is more cost effective than direct air capture at reducing carbon, study finds
The case for investing in direct air capture weakens substantially once it is directly compared against solar and wind, according to an analysis published in Communications Sustainability. The paper i...
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Dr. Carly Kenkel @drcarl.bsky.social · 22/04/2026
Excited to share this documentary created by #USC Annenberg student Sethan Perez which features work from the #CEELab - a great example of how students are using their skills to help communicate science! 🧪 www.uscannenbergmedia.com/2026/04/13/c...
uscannenbergmedia.com
Coral Crisis
Over the years, coral bleaching, a result of warmer conditions, has put coral reefs across the globe at risk of extinction. Across California, laboratories and hobbyists alike find ways to study coral...
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Dr. Carly Kenkel @drcarl.bsky.social · 12/04/2026
It is tempting, but how to prove? And without that I’m just a case of sour grapes easy to dismiss.
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Dr. Carly Kenkel @drcarl.bsky.social · 11/04/2026
oh this makes me tired. sigh.
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Dr. Carly Kenkel @drcarl.bsky.social · 10/04/2026
Resurrecting thread with new wrinkle - what to do when you suspect reviewers used AI to review your MS, you can't prove so just push back on (generic, oddly phrased) critique with rebuttal and the AE rejects appeal with text that is a generic, oddly phrased version of the original decision 😵‍💫 🧪
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Reposted by Dr. Carly Kenkel
Nature Reviews Biodiversity @natrevbiodiv.nature.com · 06/04/2026
ICYMI: New online! Accelerating coral assisted evolution to keep pace with climate change
dlvr.it
Accelerating coral assisted evolution to keep pace with climate change
Nature Reviews Biodiversity, Published online: 30 March 2026; doi:10.1038/s44358-026-00147-zOngoing and projected climate changes are bringing increased marine heatwave frequency and intensity, threatening the health and survival of coral reefs. This Roadmap outlines the potential for assisted evolution methods to increase thermal tolerance in corals and describes ways to accelerate research and development for enhancing coral adaptation rates.
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Reposted by Dr. Carly Kenkel
Sarah W. Davies Ph.D. @daviesswphd.bsky.social · 09/04/2026
Excited to see this out after years of work from many folks in the field and lab. @ben-glass.bsky.social did such a lovely job of doing this work justice! 2023 heatwave was no joke in Bocas..... Global Change Biology | onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Legacy Effects of an Extreme Marine Heatwave on a Stress‐Tolerant Coral
This work explored the effects of an unprecedented marine heatwave on the reef-building coral Siderastrea siderea across four sites (Cristobal Island, Hospital Point, Punta Donato, and STRI Point) on...
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Reposted by Dr. Carly Kenkel
Liz Neeley @lizneeley.bsky.social · 08/04/2026
DC-based friends, mark your calendars. www.atlasarts.org/events/tela-... After the concert, there's a science panel w/ @momedinamunoz.bsky.social & others. Raises $$ to build a coral gene bank & marine lab in Honduras. Vetted & endorsed by Storymaker fellow & trusted researcher @drcarl.bsky.social
atlasarts.org
Tela Coral/Chad Cannon: Music for the Ocean | Atlas Performing Arts Center
Immerse yourself in the ocean—while sitting in the concert hall. Music for the Ocean is an evening of new compositions ...
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Dr. Carly Kenkel @drcarl.bsky.social · 24/02/2026
Calling all researchers working on *Genomics of Adaptation to Extreme Thermal Environments* I'm serving as a guest editor of an upcoming collection in BMC Genomics and am eager to read your submission! More on scope and how to contribute here: bit.ly/4kH3PIx 🧪 @springer.springernature.com
bit.ly
Genomics of adaptation to extreme thermal environments
As climate change continues to influence ecosystems around the globe, understanding the genomics of adaptation to hot and cold environments is becoming ...
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Dr. Carly Kenkel @drcarl.bsky.social · 16/12/2025
🧪 Dr. Emily Aguirre's final dissertation chapter is published! She isolated a putative bacterial symbiont then cocultured it with axenic algal symbionts to ask how it impacted growth and gene expression - results were unexpected but do support a beneficial relationship - read more here rdcu.be/eUKQz
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The New York Times @nytimes.com · 23/10/2025
After a searing ocean heat wave in 2023, two of the most historically important coral species in Florida are functionally extinct from the state’s reef, scientists have found.
nyti.ms
Staghorn and Elkhorn Coral Are Functionally Extinct Off Florida, Researchers Say
Elkhorn and staghorn coral are now functionally extinct around the state, researchers say, meaning they no longer play any significant role in their ecosystem.
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Reposted by Dr. Carly Kenkel
John Parkinson @parkinsonje.bsky.social · 23/10/2025
Some additional coverage of our report on the major loss of acroporid corals in the Florida Keys by @cbsnews.com: www.cbsnews.com/news/florida...
cbsnews.com
Marine heat wave caused key part of Florida's coral reef to become "functionally extinct," report says
A record 2023 heat wave all but eradicated two species of coral that historically served as the backbone of Florida's reefs, researchers said in a new report.
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Dr. Carly Kenkel @drcarl.bsky.social · 23/10/2025
Results I'm sad to share but must be told - branching coral are now functionally extinct in Florida - to learn more check out the full study www.science.org/doi/10.1126/... and our personal summary theconversation.com/2-iconic-cor...
science.org
Heat-driven functional extinction of Caribbean Acropora corals from Florida’s Coral Reef
In 2023, a record-setting marine heat wave triggered the ninth mass coral bleaching event on Florida’s Coral Reef (FCR). We examined spatial patterns of heat exposure along the ~560-kilometer length o...
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Reposted by Dr. Carly Kenkel
Misha Matz @heatshok.bsky.social · 12/10/2025
🧪🌏 Why some coral genotypes die when planted to a reef, while others thrive? interesting leads from *constitutively expressed* immunity-related genes @drcarl.bsky.social www.researchsquare.com/article/rs-7...
researchsquare.com
Immune gene expression as a biomarker for predicting restoration success in the branching coral Acropora cervicornis
BackgroundAs coral reefs continue to decline across the globe there has been a rise in coral restoration efforts where a diversity of genets of different coral species are outplanted from nursery-grow...
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Reposted by Dr. Carly Kenkel
Erin Chille, Ph.D. 🧬🪸🧪 @erinchille.bsky.social · 24/07/2025
Today’s #DailyCoralRead 📖🪸 🧬 Two new telomere-to-telomere genome assemblies for Acropora digitifera and A. tenuis! 🧬 The study reveals highly disordered genomic regions with potentially neofunctionalized genes from lineage-specific expansions. 🧪 🔗 tiny.cc/z61q001
tiny.cc
Nearly T2T, phased genome assemblies of corals reveal haplotype diversity and the evolutionary process of gene expansion
Abstract. Gene family expansion illustrates a critical aspect of evolutionary adaptation. However, the mechanisms by which gene family expansions emerge an
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Dr. Carly Kenkel @drcarl.bsky.social · 23/07/2025
🧪There are no words. E.P.A. Is Said to Draft a Plan to End Its Ability to Fight Climate Change www.nytimes.com/2025/07/22/c...
nytimes.com
E.P.A. Is Said to Draft a Plan to End Its Ability to Fight Climate Change
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Dr. Carly Kenkel @drcarl.bsky.social · 23/07/2025
Amid Fear of Retaliation, N.S.F. Workers Sign Letter of Dissent www.nytimes.com/2025/07/22/s...
nytimes.com
Amid Fear of Retaliation, N.S.F. Workers Sign Letter of Dissent
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Reposted by Dr. Carly Kenkel
Jacquelyn Gill @jacquelyngill.bsky.social · 19/07/2025
Without a research arm to support its regulatory arm, Americans will get sicker, and preventable deaths will go up. The EPA was started by (Republican!) President Richard Nixon in 1970. Some of its first regulations were to ban DDT and leaded gasoline, as well as the Clean Air and Water Acts.
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Jenna Dilworth @jennadilworth.bsky.social · 17/07/2025
I authored a blog post for @uscwrigley.usc.edu about the work I've been doing along with fellow lab members at the CEE Lab (led by @drcarl.bsky.social) to identify intervention priorities for coral restoration in the Caribbean under the impacts of climate change! dornsife.usc.edu/wrigley/2025...
dornsife.usc.edu
Envisioning a future for Caribbean coral reefs: lessons in resilience and collaboration - Wrigley Institute for Environment and Sustainability
Creating a more sustainable and environmentally just future for our planet and all who live on it
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Reposted by Dr. Carly Kenkel
Liz Neeley @lizneeley.bsky.social · 23/05/2025
You may have seen a lot of headlines since yesterday about budget negotiations, the threat to Medicaid & new restrictions that block transgender care. It's hard to track it all. Really grateful for the @unbreaking.org team that did incredible work to push updates to our pages today - unbreaking.org
unbreaking.org
Unbreaking
How the administration is breaking the government, and what that means for all of us.
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Dr. Carly Kenkel @drcarl.bsky.social · 15/05/2025
Its that time again - the list of Ecology/Evolution/Marine Bio Labs recruiting grad students for Fall 2026 is live! PIs enter your position info here: forms.gle/2XTHBP6CZGEn... Prospective students (and PIs not recruiting) share the composite list: docs.google.com/spreadsheets... Please share! 🧪
forms.gle
Ecology/Evolution/Marine Biology labs recruiting for Fall 2026
Please complete this form if you are a PI recruiting graduate students for a Fall 2026 start. If you are NOT recruiting, feel free to share the response sheet with prospective students looking for lab...
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Reposted by Dr. Carly Kenkel
Alex Wild @alexwild.bsky.social · 08/03/2025
Really wish people would stop talking about the problem with Science under Trump as “budget cuts”. No. Budgets are set deliberatively by elected members of congress. Budgets haven’t been cut. What’s happening are *purges* and *censorship*.
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Dr. Carly Kenkel @drcarl.bsky.social · 08/03/2025
I didn’t realize how much I needed this #StandUpForScience rally - thank you #LA organizers!! 🧪
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Dr. Carly Kenkel @drcarl.bsky.social · 22/02/2025
🧪 www.insidehighered.com/opinion/blog...
insidehighered.com
A Dear Colleague letter in defense of DEI, by Shaun Harper
Shaun Harper identifies 11 specific actions higher ed institutions can take to uphold their commitment to diversity, equity and inclusion.
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Reposted by Dr. Carly Kenkel
Darby Saxbe @darbysaxbe.bsky.social · 04/02/2025
🚨BREAKING. From a program officer at the National Science Foundation, a list of keywords that can cause a grant to be pulled. I will be sharing screenshots of these keywords along with a decision tree. Please share widely. This is a crisis for academic freedom & science.
list of banned keywords
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Sarah W. Davies Ph.D. @daviesswphd.bsky.social · 16/01/2025
Happy to share our new paper "Cryptic coral diversity is associated with symbioses, physiology, and response to thermal challenge". Check it out and share with your friends! www.science.org/doi/10.1126/...
science.org
Cryptic coral diversity is associated with symbioses, physiology, and response to thermal challenge
Cryptic coral hosts differ in phenotypes relevant to climate change.
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Reposted by Dr. Carly Kenkel
Eco_evo_danny @ecoevodanny.bsky.social · 14/01/2025
Check out my first chapter 📖🧬. I’m very grateful to have worked with such a brilliant and supportive team 😊
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Dr. Carly Kenkel @drcarl.bsky.social · 13/01/2025
Special thanks to @la-cientifica.bsky.social for sticking with this one through my mat leave and a pandemic and to @ecoevodanny.bsky.social for pushing through a messy mountain of PCRs and library preps!
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Dr. Carly Kenkel @drcarl.bsky.social · 13/01/2025
Be sure to check out the paper onlinelibrary.wiley.com/doi/10.1002/... for more info on the performance differences; and for the first time, an exploration of family-level differences in symbiont community composition!
onlinelibrary.wiley.com
Symbiont Community Changes Confer Fitness Benefits for Larvae in a Vertically Transmitting Coral
We quantified the fitness consequences of changes in symbiont communities under a simulated heatwave in early life-history stages of Montipora digitata by tracking changes in their growth, survival, ...
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Dr. Carly Kenkel @drcarl.bsky.social · 13/01/2025
But the same pattern was not observed in the juvenile recruits
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Dr. Carly Kenkel @drcarl.bsky.social · 13/01/2025
In parallel we saw big changes in symbiont community composition of surviving larvae under heat
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Dr. Carly Kenkel @drcarl.bsky.social · 13/01/2025
In it he shows that symbiont shuffling may be a mechanism to increase thermal tolerance of Montipora digitata larvae, but that juvenile recruits seem to lack. Elevated temperature impacted survival in both larvae and juveniles, but comparatively, larvae survived for much longer than recruits
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Dr. Carly Kenkel @drcarl.bsky.social · 13/01/2025
Grateful for some good news after this last week - first dissertation chapter for @ecoevodanny.bsky.social is out now in Ecology & Evolution! onlinelibrary.wiley.com/doi/10.1002/... 🧪
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Dr. Carly Kenkel @drcarl.bsky.social · 06/01/2025
Wrigley summer fellowship app is live!! Both NSF REU and Zinsmeyer - we've got 2 slots earmarked for our lab - apply to work with us! dornsife.usc.edu/wrigley/educ...
dornsife.usc.edu
Summer Research Internships - Wrigley Institute for Environment and Sustainability
Creating a more sustainable and environmentally just future for our planet and all who live on it
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Dr. Carly Kenkel @drcarl.bsky.social · 03/10/2024
I'm looking for a postdoc! The successful applicant will lead neuro- and comparative genomic analyses to characterize neurobiology-related genetic variation in wild coral populations. Learn more and apply here - I will be reviewing apps beginning Oct 18: usccareers.usc.edu/job/los-ange...
usccareers.usc.edu
Postdoctoral Scholar - Research Associate at USC
Learn more about applying for Postdoctoral Scholar - Research Associate at USC
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Dr. Carly Kenkel @drcarl.bsky.social · 18/09/2024
Calling all #reeffutures conference attendees - consider donating your brainpower to our workshop!
https://docs.google.com/forms/d/e/1FAIpQLScUGGUOKZFwQ26TL5xPzupa35z2gAIGxpL5X-Az6gNFSCnZjA/viewform
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Dr. Carly Kenkel @drcarl.bsky.social · 10/09/2024
I'm recruiting a fully funded PhD student for a Fall 2025 start - see details below and learn more about my lab here: dornsife.usc.edu/carlslab/
https://today.ucsd.edu/story/uc-san-diego-receives-10-million-for-center-on-neurobiology-in-changing-environments
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Dr. Carly Kenkel @drcarl.bsky.social · 10/09/2024
It's finally official - excited to begin working with this team! Stay tuned for PhD and Postdoc positions in my lab as part of this project!! today.ucsd.edu/story/uc-san...
today.ucsd.edu
UC San Diego Receives $10 Million for Center on Neurobiology in Changing Environments
The Paul G. Allen Frontiers Group has selected UC San Diego’s Scripps Institution of Oceanography to receive a four-year, $10 million grant to establish the Allen Discovery Center for Neurobiology in ...
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