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Deepak Haarith, Ph.D.

@deepakhaarith.bsky.social
184 followers 231 following 48 posts

Asst. Prof. of Nematology at University of Florida. #plants #microbes and their interactions - especially fond of #nematodes #fungi Love indulging in #rice and good arguments

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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 19/08/2026
Status update as a #newPI
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 17/06/2026
HHello, Early-career Bioinformatics folx looking for a job! I have a postdoc opening in my program. P.S. I only have an opening for bioinformatics postdoc. I am not recruiting applied/field nematology postdocs at the moment. #omics #JobAlert #bioinformatics #postdoc
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Reposted by Deepak Haarith, Ph.D.
Plant Disease @plantdiseasej.bsky.social · 05/06/2026
Senyu Chen et al. summarize the evaluation of 1,220 USDA germplasm accessions of common bean for resistance to soybean cyst #nematode (SCN) across eight SCN populations conducted in Minnesota, Illinois, and North Dakota: doi.org/10.1094/PDIS-03-25-0505-RE #plantdisease #plantpathology
Fig. 1.
Distribution of female index of soybean cyst nematode Heterodera glycines (HG) type 0 (race 6) in test 1; HG type 7 (race 6), HG type 2.5.7 (race 5), and HG type 1.3.6.7 (race 14) in test 3; and HG type 2.5.7 and HG type 1.2.3.5.6.7 in the test by Wen et al. (2019) on U.S. Department of Agriculture common bean accessions.
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 28/05/2026
Interested in joining my graduate program for Fall 2027? I’m an affiliate faculty member with the UF Genetics Institute, and applications for the Fall 2027 intake are due by December 1, 2026. Learn more and apply here: ufgi.ufl.edu/grad-program...
ufgi.ufl.edu
G&G- Admissions - Genetics Institute
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 20/03/2026
Happy to share that my recent work on <i>Pratylenchus penetrans </i> and Soybeans is now published online as First Look. Open access article coming soon on Plant Disease @plantdisease.bsky.social @plantdiseasej.bsky.social apsjournals.apsnet.org/doi/epdf/10....
apsjournals.apsnet.org
Soybean Rhg1 resistance to Heterodera glycines hinders the parasitism of Pratylenchus penetrans | Plant Disease
Rhg1 has been the most effective QTL deployed in soybeans (Glycine max) to control soybean cyst nematode (Heterodera glycines; SCN). However, the resistance mechanisms and specificity of Rhg1 towards SCN as opposed to other plant parasitic nematodes are not well known. In this study we report that Rhg1 can hinder the parasitism of the root lesion nematode Pratylenchus penetrans (Pp), which is commonly found along with SCN in northern U.S. soybean fields. Two elite public soybean varieties, carrying either rhg1-a + Rhg4 or rhg1-b, negatively impacted Pp populations measured at 30 dpi. This contribution of Rhg1 was more rigorously demonstrated using near isogenic lines for rhg1-b. Additionally, in three of the four soybean genetic backgrounds tested we observed significantly more Pp at 30 dpi when Pp were co-inoculated with SCN, consistent with a previous study. No significant changes in SCN cyst numbers upon co-inoculation with Pp were observed for any of the SCN-resistant rhg1 lines. No nematode-induced changes in Rhg1 transcript abundances were observed when sampling infected root sections in any of the plant genotypes, and no changes in a jasmonate response indicator were observed. However, the 3 dpi salicylate-mediated response to SCN or Pp became more robust during SCN + Pp co-infection. Multiple hypotheses for further dissection and manipulation of soybean resistance to Pratylenchus root lesion nematodes are suggested based on the present findings.
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Reposted by Deepak Haarith, Ph.D.
Umeå Plant Science Centre @umeaplantsciencecentre.se · 22/01/2026
🧪🌾VACANCY – Postdoc in Plant Genomics🧬 Do you work with plant molecular biology, genomics, bioinformatics or systems genetics? Join Nathaniel Street’s group and study transposable elements in conifers! 📅 Apply by 11 February Full details & application: www.umu.se/en/work-with...
umu.se
Postdoc (2 years) in plant genomics with a focus on transposable elements
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Reposted by Deepak Haarith, Ph.D.
Richard Waite @waiterich.bsky.social · 07/10/2025
This isn’t actually a thread of different posts. It’s all just different cultivars of a single post
The “That's On Me, I Set the Bar Too Low” meme, but edited to reference Brassica oleracea. Text as follows:
 
Jake: I'm an expert on vegetables
Jess: Oh yeah? Name ten vegetables
Jake: Brassica oleracea
Jess: That's on me, I set the bar too low.
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Reposted by Deepak Haarith, Ph.D.
Sara Branco @sbranco.bsky.social · 17/01/2026
The NSF strategic plan FY 2026-30 is available for public comment until Jan 27. Please make your voice heard! www.nsf.gov/od/updates/n...
nsf.gov
NSF seeks public input on its Fiscal Year (FY) 2026–2030 NSF Strategic Plan
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Reposted by Deepak Haarith, Ph.D.
Oded Rechavi @odedrechavi.bsky.social · 18/01/2026
When someone borrows your pipette without asking
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 25/12/2025
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 05/12/2025
Haarith lab end-of-semester Ice cream party! Happy Kaarthigai, Merry Christmas, Happy Chanukah, Happy New Year, Happy Holidays!
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 19/11/2025
Level up! Just completed the Teacher's college at UF/IFAS CALS. Had a lot of fun and insightful discussions just ahead of teaching a large class in Spring 2026.
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 21/10/2025
Early birthday gift that arrived on Diwali. Very thoughtful and I love it! #Green = The best colour in the world! #Nematode = The best animal in the world! Thank you, my friend Jordan Bretl! #UFBugs
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Phytopathology® @phytopathology.bsky.social · 08/10/2025
“Overexpression of α-SNAPRhg1 Can Improve rhg1-a-Mediated Soybean Resistance to Soybean Cyst Nematode,” by Deepak Haarith et al. Available open access in Phytopathology, Volume 115, Number 9: doi.org/10.1094/PHYTO-02-25-0077-R
Fig. 4.
Protein abundance immunoblots for 7 days postinoculation (dpi) samples of soybean cyst nematode (SCN)-infested root zones or similar areas from noninfested samples from same experiment as in Figure 3. The affinity-purified polyclonal antibodies raised against α-SNAPRhg1HC C-terminus peptide cross-react with the α-SNAPRhg1LC protein but not the Wm82 α-SNAPRhg1WT, whereas antibodies against α-SNAPRhg1LC C-terminus peptide are specific for the α-SNAPRhg1LC protein. Experiments used pooled samples of three roots each, separately for Set 1 and Set 2 seedlings. Similarity of total protein loading confirmed by Ponceau staining (Supplementary Fig. S4). Noncropped images for all blots shown are presented in Supplementary Figure S5.
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Phytopathology® @phytopathology.bsky.social · 06/10/2025
Nabin Poudel et al. conducted the first comprehensive evaluation of fluazaindolizine, fluensulfone, fluopyram, and oxamyl on motility, reproduction, and egg hatching in various root-knot nematode species.🪱 Learn more: doi.org/10.1094/PHYTO-01-25-0028-R
doi.org
Differential Response of Meloidogyne enterolobii, M. floridensis, M. haplanaria, and M. incognita to Sublethal Doses of Nonfumigant Nematicides | Phytopathology®
Root-knot nematodes (RKNs; Meloidogyne spp.) are among the most widespread and damaging plant-parasitic nematodes known. Although M. incognita is the most prevalent RKN species, other species, including M. enterolobii, M. floridensis, and M. haplanaria,...
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 02/10/2025
New #soybean #nematode #pratylenchus #rhg1 preprint www.biorxiv.org/content/10.1...
biorxiv.org
Soybean Rhg1 resistance to Heterodera glycines impedes the parasitism of Pratylenchus penetrans
Rhg1 has been the most effective QTL deployed in soybeans to control soybean cyst nematode (Heterodera glycines; SCN). However, the resistance mechanisms and specificity of Rhg1 towards SCN as opposed...
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 18/09/2025
Introducing the first members of Haarith Lab. #UndergraduateResearch
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Stacey D. Smith @iochromaland.bsky.social · 11/08/2025
Big news! We are recruiting a postdoc to work on tomatillo evolution: jobs.colorado.edu/jobs/JobDeta.... The clade containing tomatillos and its allies (ca 300 spp) has evolved lantern fruits at least 25 times - we want to know why! Join us @rociodeanna.bsky.social & @caschenck-bio.bsky.social
jobs.colorado.edu
Postdoctoral Fellow in Tomatillo Evolution
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 05/08/2025
Welcome gift - a plant? OMG YES! Thank you Dr. Andrea Lucky for the first plant in my new office.
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 09/07/2025
I am looking for a PhD student in #molecularbiology #biochemistry #bioinformatics to work with #plants and #nematodes Please share widely. Also, prospective applicants please check out this link: www.alligator.org/article/2024... #PhDposition
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 27/06/2025
My adviser organized a surprise farewell and sent me away with 5 UW Madison gifts for the 5 years I spent with him. The weather cooperated for a Terrace hangout. So long. Farewell.
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 17/06/2025
Overexpression of α-SNAPRhg1 Can Improve rhg1-a Mediated Soybean Resistance to Soybean Cyst Nematode | Phytopathology® apsjournals.apsnet.org/doi/10.1094/... #nematology #soybean
apsjournals.apsnet.org
Overexpression of α-SNAPRhg1 Can Improve rhg1-a Mediated Soybean Resistance to Soybean Cyst Nematode | Phytopathology®
The rhg1-a and rhg1-b haplotypes of the soybean Rhg1 locus are economically effective tools for the control of soybean cyst nematode (SCN; Heterodera glycines), but ongoing SCN evolution requires impr...
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 09/06/2025
Fun morning going through stocks and cultures as I prepare for the big move. Here is a picture of some #nematode cuties.
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 28/04/2025
The worst part of Spring is here: the omnipresent skunk of the tree world - Bradford Pears. Ewww
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 22/04/2025
I wrote down my learning as an international (Indian) graduate student in the USA, as a piece of advice. This could be useful to students and other academics alike? Let me know what you think! I hope this is helpful. #gradschool #newPI #international #studyabroad www.linkedin.com/pulse/indian...
linkedin.com
Indian Grass Is NOT Browner Than Grass Abroad – AND Vice-versa (Graduate school advice)
Before I begin, I want to clarify that everything I’m about to share is drawn from my own experiences and from many honest conversations I’ve had with fellow Indian students — both in person and here ...
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Reposted by Deepak Haarith, Ph.D.
Phytopathology® @phytopathology.bsky.social · 21/03/2025
Robbert van Himbeeck et al. investigated whether chlorophyll fluorescence could be suitable as a rapid, nondestructive method for early potato cyst nematode detection. 🥔 Learn more: doi.org/10.1094/PHYT... @jaapjanwillig.bsky.social
The impact of nematode inoculation on classical plant performance indicators. A, The effect of nematode inoculation on dry shoot biomass, dry root biomass, and root surface area at 26 days postinoculation (DPI) for each potato cyst nematode (PCN) inoculation density. The asterisks indicate significant differences (Wilcoxon rank-sum test) of the inoculated plants compared with the uninoculated control (0 eggs per gram of soil) (ns = P > 0.05, * = P < 0.05, ** = P < 0.01, and *** = P < 0.001). B, Cleaned and dried root systems of five representative plants for each inoculation density.
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Reposted by Deepak Haarith, Ph.D.
ascalaphid @ascalaphid.com · 20/03/2025
nematode aquatint etching from c. 2010 that i still like
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Society of Nematologists @son-nemaweb.bsky.social · 18/02/2025
Very exciting Career Development workshop provided by the SON Industry & Student committees! Registration & event information can be found here: nematologists.org/event-6040380 Hope to see you there!
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Reposted by Deepak Haarith, Ph.D.
Oded Rechavi @odedrechavi.bsky.social · 17/02/2025
Wasting a writing session on the paper's title
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 15/02/2025
To US colleagues who have lost or are in imminent danger of losing their jobs: please DM whether we can accommodate your research.
German and US flags
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Reposted by Deepak Haarith, Ph.D.
American Society of Plant Biologists @aspbofficial.bsky.social · 21/01/2025
🚨 Opportunity Alert! Now accepting applications for 2025 Summer Undergraduate Research Fellowships (SURF). Learn more and apply by February 7, 2025 👉 surf.aspb.org
Image text: Opportunity Alert! Now accepting applications for Summer Undergraduate Research Fellowships. Apply by February 7, 2025! Recipients receive: $6000 summer stipend, ASPB membership, $700 for materials, Travel support to Plant Biology 2026. Featuring ASPB logo on a plant themed background.
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 01/02/2025
It's not pandemic anymore and I finally had my PhD graduation party with my lab. Even if it took 5 years post graduation to do this, it was all worth it to see people, have a real conversation and share food. @umnplantpath.bsky.social @son-nemaweb.bsky.social
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 02/01/2025
It is like going back in time by over a decade! #PhDlife #PhDChat #graduateschool #NewPI youtu.be/FAeEIdPJxx4?...
youtu.be
Should You Email Potential PhD Advisors? The Do's and Don’ts Explained
YouTube video by Dr. Philippe Barr
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 26/12/2024
Imagine a pathogen that reproduces 5-6 times in a growing season. Resistance curbs it's growth from 5 to 3 units per turn. It's not statistically signif by any fancy stats. Considering exponential growth of the pathogen, it may be significant. So, what is your research question, Indeed?
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 24/12/2024
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Society of Nematologists @son-nemaweb.bsky.social · 18/12/2024
Wild-type (WT) strains of Caenorhabditis elegans have a smooth body wall and they crawl in a sinusoidal-like pattern, whereas Rolling (Rol) mutants twist their body like a corkscrew and usually remain in the same region, moving in a nearly circular pattern.
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 17/12/2024
I am building a research team - please check it out! sites.google.com/view/haarith...
sites.google.com
Haarith Lab - Molecular Nematology - Haarith Lab at UF
Haarith Lab is coming to University of Florida Department of Entomology & Nematology in August 2025! The Haarith lab at University of Florida is broadly interested in understanding how plants and the...
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Hank Green @hankgreen.bsky.social · 09/12/2024
If it helps with your anxiety at all, four fifths of all animals are nematodes.
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David Pires @david1822.bsky.social · 05/12/2024
🌏 Happy #WorldSoilDay! 💡 #Nematodes help break down organic matter & recycle nutrients, making them more accessible to plants, acting as natural pest controllers & keeping pathogens in check. By maintaining a balanced soil ecosystem, they help promote thriving plants! 🌿 www.mdpi.com/2071-1050/15...
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Ed Sikora @alabamaed1.bsky.social · 05/12/2024
Red imported fire ants are named for their ability to inflict painful bites/stings. Fire ant mounds appear as disturbed soil. Tunnels below the mounds can extend up to 30 meters & may hold up to 500,000 ants. Mounds can reach 24 inches in height such as this one centered on a dead soybean plant 🧪
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 04/12/2024
Who do I know in #Nematology who is skilled at classical stuff such as nematode culture and assays while also skilled at molecular biology techniques like RT qPCR, Western blots and omics analyses? Please connect with me and send me a message. Thank you!
media.tenor.com
a purple background with a white envelope and the text message me
ALT: a purple background with a white envelope and the text message me
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 27/11/2024
#Nematode soup
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 20/11/2024
Hello friends! I am excited to share that I will join University of Florida @uflorida.bsky.social as Assistant Professor of Molecular Nematology from August 2025. My lab will study #plant #nematode #microbe interactions. Back to the tropics? Thanks to all my mentors. #NewPI #nematology
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 19/03/2024
Happy National Agriculture day!
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 12/02/2024
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 08/02/2024
Not including methods papers, how old is an old paper to cite?
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Deepak Haarith, Ph.D. @deepakhaarith.bsky.social · 13/01/2024
I definitely need a respite from this!
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