Oxygen is one of the most important environmental variables affecting microbial activity and composition, but is often difficult to measure in situ. We developed a tool, OxyMetaG, that leverages diffe...

How cell shape and interaction sign shape clonal sectors in growing bacterial colonies, in a 3D cube model and a 2D range-expansion model. - davideciccarese/Cells-Shapes

Computational reconstruction of the oral plaque hedgehog biofilm: reaction-diffusion gradients, agent-based coaggregation assembly, and a dynamic 3D oxygen and metabolite solve. - davideciccarese/H...

by Christoph — If someone told you that your mouth harbors roughly 700 different bacterial species you might think "that's gross!" but you'd probably just say "Ooh!". Wait! Please, keep your mouth…

Computational reconstruction of the oral plaque hedgehog biofilm: reaction-diffusion gradients, agent-based coaggregation assembly, and a dynamic 3D oxygen and metabolite solve. - davideciccarese/H...

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Recent advances in anaerobic microbiology have driven significant progress in biotechnology, environmental microbiology, and biochemistry. Anaerobes play key roles in sustainable biotechnological pro…

Sabnis et al. explain why non-conjugative plasmids move at a low rate in nature. While increased mobility can easily evolve by incorporating phage DNA into plasmids, this is disadvantageous because it...