Posted 7:10:42 AM. As part of the recently funded CRC1774, a PhD position (100% TV-L E13, 3 years) in bioinformatics…See this and similar jobs on LinkedIn.

A rust implementation of STAR. Contribute to scverse/rustar-aligner development by creating an account on GitHub.

Pangenomes are genome references that integrate sequences from multiple individuals into graph-based or multi-haplotype representations, capturing genetic variation beyond a single linear reference. H...

Major upgrade for panacus, introducing new formats and new analyses. Add: Support for VCF files Support for sqz-ified GFA files (see SQZ) RegionalVariation (Hill numbers) analysis RegionalGrowth a...

He helped develop the technique of whole-genome shotgun sequencing, still widely used today

Install sqz with Anaconda.org. sqz is a tool for compressing and decompressing path annotations in GFA files.

What's changed Rewrite of the main algorithm, this version should be both faster and fixes a couple of issues were the old version ran into problems with certain graphs. Additionally, it adds funct...

Fast, Cache-Efficient, and Scalable Queries on Pangenomes - mohsenzakeri/Movi

About EMBL-EBI EMBL’s European Bioinformatics Institute is a data powerhouse, utilised on a global scale to advance scientific discovery through bioinformatics and solutions to some of the world’s mos...

Title: Postdoctoral Associate Summary statement: The postdoctoral research associate is responsible for developing novel computational methodology for high-throughput sequence genomics tasks, as well ...

WABI Conference on Algorithms in Bioinformatics

Using sequencing and haplotype-resolved assembly of 65 diverse human genomes, complex regions including the major histocompatibility complex and centromeres are analysed.

Aligning genomes into common coordinates is central to pangenome construction, though computationally expensive. Multi-sequence maximal unique matches (multi-MUMs) help to frame and solve the multiple...

Panacus is a tool for computing statistics for GFA-formatted pangenome graphs - codialab/panacus

Background We study the classical problem of inferring ancestral genomes from a set of extant genomes under a given phylogeny, known as the Small Parsimony Problem (SPP). Genomes are represented as se...

Pangenome graphs offer a compact and comprehensive representation of genomic diversity, improving tasks such as variant calling, genotyping, and other downstream analyses. Although the underlying grap...