iiinova — where your digital self keeps evolving

Reposted by Charlotte Bunne

EPFL School of Computer and Communication Sciences @icepfl.bsky.social · 11/11/2025

🎉 Congratulations to Assistant Professors @abosselut.bsky.social (IC), @bunnech.bsky.social (IC & SV), and @mschrimpf.bsky.social (IC & SV) for being selected as #AI2050 Early Career Fellows by @schmidtsciences.bsky.social ! 🔗 Full article: actu.epfl.ch/news/epfl-pr...

actu.epfl.ch

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Reposted by Charlotte Bunne

EPFL AI Center @epfl-ai-center.bsky.social · 25/03/2025

Could AI enable the next big breakthrough in biology? 🔬 @bunnech.bsky.social & @stephenquake.bsky.social present the Artificial Intelligence Virtual Cell, a bold project transforming how we study life at the cellular level. Listen here👉 erictopol.substack.com/p/the-holy-g... #AI4Science #AI4Health

erictopol.substack.com

The Holy Grail of Biology

Towards the Virtual Cell with Steve Quake and Charlotte Bunne

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Reposted by Charlotte Bunne

Magnus Rattray @mrattray.bsky.social · 27/03/2025

Hybrid workshop on Generative AI for Biology with great speakers including Sarah Teichmann, @bunnech.bsky.social, Francesco Di Giovanni, Diego Oyarzun, Jussi Taipale, @jhartford.bsky.social, Chris Barnes and Marta Milo. Link for online registration www.genai.ac.uk/news-feed/ce...

genai.ac.uk

<br/>Online workshop - Generative AI for Biology — gen ai

Online registration for hybrid workshop on 12 May looking at the development of generative models for large and high-resolution biological datasets.

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Charlotte Bunne @bunnech.bsky.social · 20/01/2025

I spoke with @natureportfolio.bsky.social about the transformative potential of foundation models for biology—particularly in personalized medicine & clinical diagnostics. Take a look at the technologies to watch in 2025. An exciting year ahead for AI & biomedicine! www.nature.com/articles/d41...

nature.com

Self-driving laboratories, advanced immunotherapies and five more technologies to watch in 2025

Sustainability and artificial intelligence dominate our seventh annual round-up of exciting innovations.

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Charlotte Bunne @bunnech.bsky.social · 16/01/2025

Read the full paper: arxiv.org/pdf/2501.060... Would love to hear your thoughts! Feel free to reach out with questions.

arxiv.org

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Charlotte Bunne @bunnech.bsky.social · 16/01/2025

This was a fantastic collaboration between researchers at @icepfl.bsky.social, @epfl-ai-center.bsky.social, the and University Hospital Zurich with co-authors Gabriele Gut , Andreas Wicki, Kiril Vasilev and Matteo Pariset! This is just the beginning - we’re excited of what is coming next!

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Charlotte Bunne @bunnech.bsky.social · 16/01/2025

🔎How? VirTues is built on a novel vision transformer architecture that efficiently processes high-dimensional data and flexible numbers of input channels while maintaining biological interpretability.

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Charlotte Bunne @bunnech.bsky.social · 16/01/2025

💡Why now? Spatial proteomics has just been announced ‘Method of the Year’ by @naturemethods.bsky.social due to its critical role in #clinical #diagnostics and #computational #pathology. VirTues is the first AI model that can handle the complexity and unique requirements of multiplex images

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Charlotte Bunne @bunnech.bsky.social · 16/01/2025

• Handle varying combinations of hundreds of protein markers without retraining. • Provide interpretable insights from molecular to tissue scales through its multi-scale design and novel attention. • Support clinical decisions through case retrieval and the creation.

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Charlotte Bunne @bunnech.bsky.social · 16/01/2025

🧬Our work tackles a key challenge in precision medicine: making sense of highly multiplexed tissue imaging data that captures dozens of molecular markers simultaneously. VirTues can: • Provide zero-shot virtual tissue representations across cancer types and diseases.

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Charlotte Bunne @bunnech.bsky.social · 16/01/2025

Led by PhD students wencksternjo.bsky.social and @eeshaanjain.bsky.social, we introduce the Virtual Tissues platform (VirTues), a foundation model framework for analyzing complex tissue architectures.

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Charlotte Bunne @bunnech.bsky.social · 16/01/2025

✨Excited to share our work on “AI-powered virtual tissues from spatial proteomics for clinical diagnostics and biomedical discovery” (arxiv.org/pdf/2501.060...), building on our vision paper in @cellpress.bsky.social on multi-scale, multi-modal foundation models (shorturl.at/G2Dew).

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Reposted by Charlotte Bunne

Kristina Ulicna @kristinaulicna.bsky.social · 19/12/2024

Exciting news! 🚀 The Learning Meaningful Representations of Life ( #LMRL 🌟) workshop is returning at #ICLR2025! 🎉 On 27th / 28th April 2025 in Singapore 🇸🇬, this popular event returns with a fresh organizing team 👇 & bold new ideas 🧠 to explore bridging AI & life sciences 🧬

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Reposted by Charlotte Bunne

Arnaud Doucet @arnauddoucet.bsky.social · 15/12/2024

The slides of my NeurIPS lecture "From Diffusion Models to Schrödinger Bridges - Generative Modeling meets Optimal Transport" can be found here drive.google.com/file/d/1eLa3...

drive.google.com

BreimanLectureNeurIPS2024_Doucet.pdf

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Charlotte Bunne @bunnech.bsky.social · 12/12/2024

Building Al virtual cells is no small feat! With a massive scientific undertaking and shared goals, we posit that a comprehensive understanding of cellular mechanisms is within reach. Stay tuned for exciting research coming out soon and consider joining my lab @icepfl.bsky.social! aimm.epfl.ch

aimm.epfl.ch

Bunne Lab - Artificial Intelligence in Molecular Medicine

Led by Charlotte Bunne in EPFL's Computer Science and Life Sciences departments, our research aims to advance personalized medicine by utilizing machine learning and large-scale biomedical data.

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Charlotte Bunne @bunnech.bsky.social · 12/12/2024

... integrates extensive community discussions, resulting in an author list consisting of key leaders across different fields of Al and biology from @genentech.bsky.social, @chanzuckerberg.bsky.social , @msftresearch.bsky.social, @broadinstitute.org, @arcinstitute.org, @embl.org and more!

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Charlotte Bunne @bunnech.bsky.social · 12/12/2024

Our work with @yusufroohani.bsky.social, @yanayrosen.bsky.social, Theofanis Karaletsos, Aviv Regev, Emma Lundberg, Jure Leskovec, Stephen Quake ...

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Charlotte Bunne @bunnech.bsky.social · 12/12/2024

How can we build an Al virtual cell that simulates all functions and interactions of a cell? How will it transform research and drive breakthroughs in programmable biology, drug discovery and personalized medicine? Take a look at our paper in @cellpress.bsky.social! www.cell.com/cell/fulltex...

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Reposted by Charlotte Bunne

Eric Topol @erictopol.bsky.social · 12/12/2024

Towards the #AI virtual cell, which would represent one the most extraordinary achievements in life science www.cell.com/cell/fulltex... @bunnech.bsky.social

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