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Ben Morehouse

@benmorehouse.bsky.social
340 followers 319 following 52 posts

Assistant Professor at UCIrvine. Biochemistry and structural biology enthusiast. Dabbling in innate immunity and microbiology. Phage defense, cyclic nucleotides, and cool enzymes. (he/him/his) faculty.sites.uci.edu/morehouselab

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Reposted by Ben Morehouse
Gal Ofir @galofir.bsky.social · 08/10/2026
A new plant-bacteria immunological connection in the first preprint of our group at @mpi-bio-fml.bsky.social @plantevolution.bsky.social! Straight from the top of Mt. Olympus ⛰️🦅 Led by Eirik @eiriklag.bsky.social, in collaboration with @geminiteamlab.bsky.social www.biorxiv.org/content/10.6...
Our preprint with the view from the top of the Olympus in the background
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Reposted by Ben Morehouse
Anna Lopatina @annalopatina.bsky.social · 08/10/2026
Heads-up! I’ll be starting my research group at MedUni Vienna in January 2027, with postdoc and PhD positions available soon. Looking for people interested in bacteria–phage interactions, bacterial defense systems, and phage anti-defense strategies. Please send your CV: anna.lopatina@univie.ac.at
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Reposted by Ben Morehouse
Saria McKeithen-Mead, PhD @sciria.bsky.social · 05/10/2026
Pleased to share my first preprint from my postdoc, where I ask what drives mobile DNA movement between bacterial cells in complex communities like the gut microbiome. To answer this, we built a way to capture mobile DNA in the act of moving between cells, using short-read metagenomics. 🧵
doi.org
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Reposted by Ben Morehouse
Uday Tak @nokaryote.bsky.social · 05/10/2026
JOB ALERT: University of Virginia School of Medicine, Department of Microbiology, Immunology, and Cancer Biology is recruiting a virologist (open rank). Please share and forward to anyone who may be interested! More information and link to application: apply.interfolio.com/191946
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
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Reposted by Ben Morehouse
Kranzusch Lab @kranzuschlab.bsky.social · 01/10/2026
Our story with @hobbslabutah.bsky.social discovering CBASS sensing of phage proteases out now in @science.org New data include CBASS recognition of diverse proteases beyond T4, and verifying CD-NTase activation loop cleavage as the trigger for defense in vivo www.science.org/doi/10.1126/...
science.org
Phage proteases activate CBASS antiphage immunity
Cyclic oligonucleotide–based antiphage signaling systems (CBASS) are bacterial immune pathways evolutionarily related to cGAS-STING (cyclic GMP-AMP synthase–stimulator of interferon genes) in humans. ...
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Reposted by Ben Morehouse
Eirik Lågeide @eiriklag.bsky.social · 01/10/2026
Very excited to share the first preprint from my PhD with the community! This is also the first paper from the Plant Immunogenomics group with @galofir.bsky.social, so stay tuned for more! www.biorxiv.org/content/10.6... 1/n 🧵
biorxiv.org
NO VEIN is an ancestral immunity protein involved in plant-virus interaction
The conservation of immune systems from prokaryotes to eukaryotes can guide discovery of immunity genes across the tree of life. Most studies to date have focused on metazoan systems, while the extent...
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Reposted by Ben Morehouse
Daniel Fisch @danielhfisch.bsky.social · 23/09/2026
Out now @nature.com! We report a new means of cell communication: receptor-free signal transduction. TLRs engage MyD88 for minutes, yet myddosomes signal for hours. TRAM releases myddosomes from TLRs, letting them mature and sustain signaling in the cytosol. rdcu.be/jGdKxErXyAsa Details below:
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Reposted by Ben Morehouse
artemisaev.bsky.social @artemisaev.bsky.social · 11/09/2026
Chromatin structure controls defense island expression! Why do some systems defend on plasmids but fail natively? H-NS is key. Removing it boosts defense and overcomes anti-defense proteins but raises toxicity. Common lab strains still hide novel immunity modules! www.biorxiv.org/content/10.6...
biorxiv.org
H-NS silences antiviral immunity through 3D chromatin compaction
Bacterial antiviral immunity systems can be toxic to their hosts and must be tightly regulated. Immunity genes are often encoded by AT-rich mobile genetic elements subjected to silencing by nucleoid b...
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Reposted by Ben Morehouse
François Rousset @francoisrousset.bsky.social · 08/09/2026
🚨 We are excited to share the first preprint of our lab ! We discovered an NADase enzymatic domain in bacterial immunity and in the human protein TEP1. www.biorxiv.org/content/10.6...
biorxiv.org
A widespread NADase domain links bacterial immunity with human TEP1
Recent discoveries on bacterial immunity have revealed that several protein domains involved in anti-phage defense are conserved in eukaryotes, such as SIRim, TIR, PNP and gasdermin. Bacterial immune ...
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Reposted by Ben Morehouse
Erin Doherty @erinedoherty.bsky.social · 31/08/2026
I'm very excited to share that this January, I’ll be joining Columbia University’s Department of Biological Sciences as a tenure-track Assistant Professor 🏙️🦁🍎 @columbiauniversity.bsky.social 🧬 Learn more: dohertylab.org Thank you to all those who supported me along the way!
dohertylab.org
Doherty lab at Columbia University | immune signaling | Sherman Fairchild Center, 1212 Amsterdam Ave, New York, NY 10027, USA
We treat viral antagonism as a discovery tool for host biology to reveal fundamental mechanisms of immune signaling and new opportunities for therapeutic intervention.
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Reposted by Ben Morehouse
Carina de Oliveira Mann @oliveiramann.bsky.social · 21/08/2026
@indrabekere.bsky.social probed a nucleotide library from bacterial & invertebrate signaling molecules in human cells, looking for new signaling. A great tool for mapping STING's preferences across cyclic nucleotides, incl. pyrimidine-purine hybrids.
cell.com
STING agonist profiling by nucleotide library defines structural determinants of cyclic dinucleotide recognition
Biochemistry; Genetics; Molecular structure
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Reposted by Ben Morehouse
Tara Bartolec @tarabartolec.bsky.social · 20/08/2026
So happy to share that this work is finally out, now in @nature.com! Lots of new goodies since preprint so plz check it out (old thread below). Giant thank you to everybody involved + all @savitski-lab.bsky.social and @typaslab.bsky.social lab members 🙏🙏🙏 @embl.org nature.com/articles/s41...
nature.com
Pervasive phosphorylation by phage T7 kinase disarms bacterial defences - Nature
The T7 bacteriophage deactivates bacterial defence systems through T7K phosphorylation of nearly all host and phage proteins during infection.
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Reposted by Ben Morehouse
findlatergroup.bsky.social @findlatergroup.bsky.social · 19/08/2026
🚨HIRING NEWS🚨 Come be my colleague! The Dept of Chemistry & Biochemistry at UC Merced is hiring for two positions in Biochemistry! One is at the assistant professor level and the other is open rank... if you have questions, let me know! Link: aprecruit.ucmerced.edu/JPF02218
aprecruit.ucmerced.edu
2 Positions - One Assistant Professor Ladder Rank & One Open Professor Ladder Rank (Assistant, Associate, or Full Professor in Biochemistry)
University of California, Merced is hiring. Apply now!
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Reposted by Ben Morehouse
bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 12/08/2026
Minimal diadenylate cyclases have been co-opted to detect phage immune evasion www.biorxiv.org/content/10.64898/20…
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Reposted by Ben Morehouse
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
Today we are excited to introduce you to PanDA 🐼🐼🐼, a newly uncovered antiphage system!! Attendees at @SISB2026 would have heard a little about this from graduate student Ali Nabhani back in May, but we are now out here in preprint form and delighted to share more of the details. (Thread below)
biorxiv.org
Minimal diadenylate cyclases have been co-opted to detect phage immune evasion
Many bacterial immune defenses transmit recognition of phage infection via the generation of diverse cyclic nucleotide second messengers. Phage have evolved to subvert this kind of immunity by sequest...
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Reposted by Ben Morehouse
Ady Ragucci @aragucci.bsky.social · 12/08/2026
Be sure to also check out the beautiful study from Ali, @aesully98.bsky.social, @aaronwhiteley.bsky.social, and @benmorehouse.bsky.social where they further describe this Panoptes-like DisA containing system, also on bioRxiv now! www.biorxiv.org/content/10.6...
biorxiv.org
Minimal diadenylate cyclases have been co-opted to detect phage immune evasion
Many bacterial immune defenses transmit recognition of phage infection via the generation of diverse cyclic nucleotide second messengers. Phage have evolved to subvert this kind of immunity by sequest...
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Reposted by Ben Morehouse
Ady Ragucci @aragucci.bsky.social · 12/08/2026
Excited to share our story on diadenylate cyclases in bacterial immunity! Building on the discovery of Panoptes, we present Panoptoo: a DAC operon that uses cUA to guard against phage infection. Grateful to @daniellehaley.bsky.social and @kranzuschlab.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
Bacterial diadenylate cyclase domains synthesize diverse nucleotide signals in anti-phage defense
Bacterial diadenylate cyclase (DAC) enzymes synthesize the nucleotide signal 3′3′ cyclic di-AMP (3′3′-c-di-AMP) to control osmoregulation, cell-wall homeostasis, and DNA-damage responses. Here we disc...
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Reposted by Ben Morehouse
Kranzusch Lab @kranzuschlab.bsky.social · 12/08/2026
The shared principles of human and bacterial antiviral immunity An honor to highlight remarkable discoveries from many labs over the past 12 years that unite previously disparate fields of how animal cells and prokaryotes defend against viruses. www.nature.com/articles/s41... rdcu.be/fzwyB
nature.com
Shared principles of human and bacterial antiviral immunity - Nature
The Review describes shared ancient, conserved mechanisms between human antiviral immunity and bacterial anti-phage systems, outlining universal principles of pathogen sensing, signalling and effector...
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
I hope you can appreciate that PanDA really is Panoptes-like in its mechanism. Panoptoo if you will! -> see the excellent complementary study that also just launched from our friends @aragucci.bsky.social and Danielle Haley in the @kranzuschlab.bsky.social !!! www.biorxiv.org/content/10.6...
biorxiv.org
Bacterial diadenylate cyclase domains synthesize diverse nucleotide signals in anti-phage defense
Bacterial diadenylate cyclase (DAC) enzymes synthesize the nucleotide signal 3′3′ cyclic di-AMP (3′3′-c-di-AMP) to control osmoregulation, cell-wall homeostasis, and DNA-damage responses. Here we disc...
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
This story came together through the combined efforts of our fabulous leaders Ali Nabhani and @aesully98.bsky.social and our teams in the Morehouse and Whiteley labs (@laurelrobbins.bsky.social @aaronwhiteley.bsky.social and others not on Bluesky). Check it out: www.biorxiv.org/content/10.6...
biorxiv.org
Minimal diadenylate cyclases have been co-opted to detect phage immune evasion
Many bacterial immune defenses transmit recognition of phage infection via the generation of diverse cyclic nucleotide second messengers. Phage have evolved to subvert this kind of immunity by sequest...
110
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
Immune genes are known to shuffle and repurpose sensor, receptor, and effector domains to provide new mechanisms of defense against evolving pathogens. PanDA may represent a rare example where a non-immune signaling domain (DAC) has been exapted and repurposed for immune functionality, instead.
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
If we take a look at Ali’s info-laden phylogenetic tree of bacterial DACs (so much detail in here, dive in!) we find that the PanS family enzymes cluster separately from the rest of the tree and that there really is a strong division between the immune and the non-immune associated DACs.
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
So here is our final model for how we see PanDA defense operating: PanS makes c-di-AMP to keep PanE 'off'. Phage infection with Acb4 production leads to a decrease in free c-di-AMP, leading to activation of PanE. PanE disrupts the membrane.
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
PanDA is most defensive against phage harboring sponges in their genome. Selecting for escapers of defense identified mutations within the acb4 sponge implying this immune evasion gene is responsible for triggering PanDA. Acb4 knockout Bas69 and N4 phage are no longer defended against by PanDA.
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
This inverse signaling logic is very much like what we first presented for the Panoptes defense system last year- a toxic effector is repressed in the cyclic dinucleotide-bound state. So where does defense come from? www.nature.com/articles/s41...
nature.com
The Panoptes system uses decoy cyclic nucleotides to defend against phage - Nature
The Panoptes antiphage system defends bacteria by detecting phage-encoded counter-defences that sequester cyclic nucleotide signals, triggering membrane disruption and highlighting a broader strategy ...
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
Unlike cyclases in those other systems, PanS constitutively produces c-di-AMP in the absence of any stimuli- it does not sense phage infection directly. PanE, it turns out, is a toxic effector which drives membrane disruption but only in the absence of second messenger!
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
The c-di-AMP generated by PanS binds to a paired effector protein PanE, a membrane protein with a soluble 2TM-β-barrel receptor domain. This two gene architecture (synthase and effector) is very reminiscent of type I CBASS…but that’s not the whole story.
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
PanDA defense requires a synthase we call PanS that generates c-di-AMP (and some c-UMP-AMP?!). Surprisingly, PanS does this using a minimal version of a DAC protein fold with no appended regulatory or apparent sensor domains.
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
Diadenylate cyclases (DACs) have well characterized roles in bacterial physiology controlling a variety of important cell processes through their ability to produce the second messenger c-di-AMP. But we’d humbly like to add a new function of these enzymes to the list- antiphage immunity!
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
Today we are excited to introduce you to PanDA 🐼🐼🐼, a newly uncovered antiphage system!! Attendees at @SISB2026 would have heard a little about this from graduate student Ali Nabhani back in May, but we are now out here in preprint form and delighted to share more of the details. (Thread below)
biorxiv.org
Minimal diadenylate cyclases have been co-opted to detect phage immune evasion
Many bacterial immune defenses transmit recognition of phage infection via the generation of diverse cyclic nucleotide second messengers. Phage have evolved to subvert this kind of immunity by sequest...
15323
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
Immune genes are known to shuffle and repurpose sensor, receptor, and effector domains to provide new mechanisms of defense against evolving pathogens. PanDA may represent a rare example where a non-immune signaling domain (DAC) has been exapted and repurposed for immune functionality, instead.
000
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
If we take a look at Ali’s info-laden phylogenetic tree of bacterial DACs (so much detail in here, dive in!) we find that the PanS family enzymes cluster separately from the rest of the tree and that there really is a strong division between the immune and the non-immune associated DACs.
100
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
So here is our final model for how we see PanDA defense operating: PanS makes c-di-AMP to keep PanE 'off'. Phage infection with Acb4 production leads to a decrease in free c-di-AMP, leading to activation of PanE. PanE disrupts the membrane.
100
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
PanDA is most defensive against phage harboring sponges in their genome. Selecting for escapers of defense identified mutations within the acb4 sponge, implying this immune evasion gene is responsible for triggering PanDA. Acb4 knockout Bas69 and N4 phage are no longer defended against by PanDA.
100
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
This inverse signaling logic is very much like what we first presented for the Panoptes defense system last year- a toxic effector is repressed in the cyclic dinucleotide-bound state. So where does defense come from? www.nature.com/articles/s41...
nature.com
The Panoptes system uses decoy cyclic nucleotides to defend against phage - Nature
The Panoptes antiphage system defends bacteria by detecting phage-encoded counter-defences that sequester cyclic nucleotide signals, triggering membrane disruption and highlighting a broader strategy ...
100
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
Unlike cyclases in CBASS and other defense systems, PanS constitutively produces c-di-AMP in the absence of any stimuli- it does not sense phage infection directly. PanE, it turns out, is a toxic effector which drives membrane disruption but only in the absence of second messenger!
100
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
The c-di-AMP generated by PanS binds to a paired effector protein PanE, a membrane protein with a soluble 2TM-β-barrel receptor domain. This two gene architecture (synthase and effector) is very reminiscent of type I CBASS…but that’s not the whole story.
100
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
PanDA defense requires a synthase we call PanS that generates c-di-AMP (and some c-UMP-AMP?!). Surprisingly, PanS does this using a minimal version of a DAC protein fold with no appended regulatory or apparent sensor domains.
100
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
Diadenylate cyclases (DACs) have well characterized roles in bacterial physiology controlling a variety of important cell processes through their ability to produce the second messenger c-di-AMP. But we’d humbly like to add a new function of these enzymes to the list- antiphage immunity!
100
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
Immune genes are known to shuffle and repurpose sensor, receptor, and effector domains to provide new mechanisms of defense against evolving pathogens. PanDA may represent a rare example where a non-immune signaling domain (DAC) has been exapted and repurposed for immune functionality, instead.
000
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
If we take a look at Ali’s info-laden phylogenetic tree of bacterial DACs (so much detail in here, dive in!) we find that the PanS family enzymes cluster separately from the rest of the tree and that there really is a strong division between the immune and the non-immune associated DACs.
Phylogenetic tree of DAC domains- too much to describe!
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
So here is our final model for how we see PanDA defense operating: PanS makes c-di-AMP to keep PanE 'off'. Phage infection with Acb4 production leads to a decrease in free c-di-AMP, leading to activation of PanE. PanE disrupts the membrane.
Model of PanDA defense.
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
PanDA is most defensive against phage harboring sponges in their genome. Selecting for escapers of defense identified mutations within the acb4 sponge implying this immune evasion gene is responsible for triggering PanDA. Acb4 knockout Bas69 and N4 phage are no longer defended against by PanDA.
 Bar graph showing PFU counts for wildtype phage vs their acb4 knockout variants infecting E. coli with or without PanDA defense.
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
This inverse signaling logic is very much like what we first presented for the Panoptes defense system last year- a toxic effector is repressed in the cyclic dinucleotide-bound state. So where does defense come from? www.nature.com/articles/s41...
nature.com
The Panoptes system uses decoy cyclic nucleotides to defend against phage - Nature
The Panoptes antiphage system defends bacteria by detecting phage-encoded counter-defences that sequester cyclic nucleotide signals, triggering membrane disruption and highlighting a broader strategy ...
100
Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
Unlike cyclases in those other systems, PanS constitutively produces c-di-AMP in the absence of any stimuli- it does not sense phage infection directly. PanE, it turns out, is a toxic effector which drives membrane disruption but only in the absence of second messenger!
Microscopy confirms membrane impermeable dye enters bacteria due to toxic membrane disruption activity of panE
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
The c-di-AMP generated by PanS binds to a paired effector protein PanE, a membrane protein with a soluble 2TM-β-barrel receptor domain. This two gene architecture (synthase and effector) is very reminiscent of type I CBASS…but that’s not the whole story.
Alphafold model of the PanE beta-barrel effector
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
PanDA defense requires a synthase we call PanS that generates c-di-AMP (and some c-UMP-AMP?!). Surprisingly, PanS does this using a minimal version of a DAC protein fold with no appended regulatory or apparent sensor domains.
Crystal structure of the PanS minimal diadenylate cyclase
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
Diadenylate cyclases (DACs) have well characterized roles in bacterial physiology controlling a variety of important cell processes through their ability to produce the second messenger c-di-AMP. But we’d humbly like to add a new function of these enzymes to the list- antiphage immunity!
Phage defense phenotypes shown as heat map across a panel of diverse phages.
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Reposted by Ben Morehouse
Natalia Sampaio @drnatsampaio.bsky.social · 11/08/2026
We set out to map what #RNA binds to immune receptor #MDA5 during #virus infection. Our findings were unexpected: rather than viral, it was host RNA! Excited (translate: frankly, knackered) to share our paper in @natureportfolio.nature.com Nature Immunology! 🔗 www.nature.com/articles/s41... 🧵👇
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Reposted by Ben Morehouse
Malcolm White @mfwhite2.bsky.social · 11/08/2026
Tim Blower and I are guest editing a Biochemical Journal @biochemsoc.bsky.social themed collection on: The Prokaryotic Immune System It's now open for research submissions and we'd welcome submission of research and review articles. More info: portlandpress.com/biochemj/pag...
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