iiinova — where your digital self keeps evolving

Reposted by Baptiste Alberti

Yad Ghavi-Helm @yghavi.bsky.social · 26/05/2026

Only few days left to apply! This event is relevant both for wet lab biologists who want to learn more about spatial OMICs and get initiated to data analysis and for bioinformaticians who want to learn about the latests developments in spatial OMICs.

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Reposted by Baptiste Alberti

Paul Villoutreix @paulvilloutreix.bsky.social · 16/12/2025

Very excited to share our latest paper, in which we developed an approach to answer a central question: Is cell fate more dependent on a cell lineage or a cell direct neighbors? Surprisingly, when analyzing single cell trajectories, we showed that C. elegans exhibit both

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Reposted by Baptiste Alberti

Paul Villoutreix @paulvilloutreix.bsky.social · 15/11/2025

Are you passionate about the mathematics of data science, computational geometry and topology and want to apply your skills to a beautiful biological question? Come do a PhD with us! You will help us understand of how boundaries are established and maintained in early heart development.

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Reposted by Baptiste Alberti

Yad Ghavi-Helm @yghavi.bsky.social · 10/11/2025

Congratulations to Dr @baalberti.bsky.social !! 🎉 And many thanks to his jury members @randersson.bsky.social @arnausebe.bsky.social @olivier-gandrillon.mastodon.social.ap.brid.gy Marie Sémon Anouck Necsulea and co-supervizor @paulvilloutreix.bsky.social

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Baptiste Alberti @baalberti.bsky.social · 12/11/2025

It's done! I am now a PhD for real! I defended my PhD thesis last week and what an incredible day it was. I am very grateful to all the members of @igflyon.bsky.social who made these last 4 years and 8 months so memorable. I will cherish all these memories 😊

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Reposted by Baptiste Alberti

Laura Cantini @cantinilab.bsky.social · 04/11/2025

Happy to share STORIES out now on Nature Methods STORIES learns cell fate landscapes from spatial tramscripromics data profiled at several time points, thus allowing prediction of future cell states. Led by Geert-Jan Huizing and Jules Samaran www.nature.com/articles/s41... @pasteur.fr

nature.com

STORIES: learning cell fate landscapes from spatial transcriptomics using optimal transport - Nature Methods

By learning a differentiation potential using an optimal transport-based approach, STORIES models and infers cell fate trajectories using spatiotemporal omics data.

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Baptiste Alberti @baalberti.bsky.social · 23/07/2025

🚨 Our paper is out! 🚨 Check how spatial-scERA can predict enhancer activity in a virtual Drosophila embryo. Very proud of this first step in the research world published in @narjournal.bsky.social Thanks to @yghavi.bsky.social, @paulvilloutreix.bsky.social and all the scientists who made it real!

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