iiinova — where your digital self keeps evolving

ayakimovich.bsky.social @ayakimovich.bsky.social · 25/09/2026

I'm happy to share that our work with the PROFOUND consortium at @helmholtzai.bsky.social has just been accepted to @neuripsconf.bsky.social! Kudos to all the co-authors, especially Chanwoong Hwang, who is now the most junior former group member to contribute to an A* conference! @hzdr.bsky.social

000

ayakimovich.bsky.social @ayakimovich.bsky.social · 14/09/2026

Imagine: you completed and analysed a genome-wide high-content phenotypic screen, so what do you make of it? We say: just ask the screen? Yes, using plain English! Here's a genome-wide screen for HPI in VACV infection that you can talk to. BioRxiv: www.biorxiv.org/content/10.6... @hzdr.bsky.social

020

ayakimovich.bsky.social @ayakimovich.bsky.social · 16/07/2026

Every #LifeSciences #DeepLearning project starts with a dusty hard drive of messy, unannotated jpegs. 😩 What if you could render your own perfectly annotated dataset and have an #agent help improve it? 🧬🤖 Preprint!👇 arxiv.org/pdf/2607.12874 @casusscience.bsky.social @casusscience.bsky.social

arxiv.org

030

ayakimovich.bsky.social @ayakimovich.bsky.social · 26/02/2026

Some eight years ago, I shared a slightly embarrassing self help video, hoping more biologists will get into deep learning. With 20k views now, seems like someone might have found it useful. #ThrowbackThursday youtu.be/4UiDG7iC4uY?...

youtu.be

How to install CUDA on Windows for Deep Learning with TensorFlow

YouTube video by Artur Yakimovich

020

ayakimovich.bsky.social @ayakimovich.bsky.social · 12/01/2026

New Year – new tool for tackling inverse problems in microscopy! TLDR; what’s so new? Fluorescence micrographs are mostly background – stop wasting neurons and check out our sparsity-efficient approach! www.nature.com/articles/s44... | @casusscience.bsky.social | @hzdr.bsky.social

nature.com

Client Challenge

021

ayakimovich.bsky.social @ayakimovich.bsky.social · 12/12/2025

Season's greetings from the University of Wroclaw which I passed by to give a talk at the second symposium on #AI ∀, just to be amazed at the plethora of local algos and applications! (and yes this Xmas tree thinks it's better than yours)

000

ayakimovich.bsky.social @ayakimovich.bsky.social · 01/11/2025

There's a fully funded postdoc position available in my group starting next year. Prerequisites: you know that python is not just a snake 🐍, pi is not just a dessert 🎂, policy is more than insurance 📃, proteins and training don't just mean gym 🏋️ to you. DM if interested.

010

ayakimovich.bsky.social @ayakimovich.bsky.social · 30/10/2025

This year for Halloween I will be the Schienenersatzverkehr 👻

000

ayakimovich.bsky.social @ayakimovich.bsky.social · 01/10/2025

Always great to be back to #Basel, you might think that staying in hotel 2.7182.. is irrational, but the night rates are quite natural! #FoB here we go!

000

ayakimovich.bsky.social @ayakimovich.bsky.social · 23/09/2025

I'll be speaking at the Festival of Biologics 2025 in Basel next week. If you're interested, pass by and please pick up one of my FREE passes: i.snoball.it/p/IGqAE/l/7 #FestivalOfBiologics @hzdr.bsky.social @casusscience.bsky.social

i.snoball.it

Europe's largest biologics event.

010

ayakimovich.bsky.social @ayakimovich.bsky.social · 18/09/2025

looking forward to talking about #Microscopy, #GenAI, and virological plaques at the 8th International Symposium on Systems Biology of Microbial Infection in beautiful Jena!

010

ayakimovich.bsky.social @ayakimovich.bsky.social · 21/08/2025

Had a blast discussing #microscopy and #AI at BNMI in beautiful Gothenburg!

031

ayakimovich.bsky.social @ayakimovich.bsky.social · 11/07/2025

I am happy to share that I have recently been invited and joined the editorial board of mSphere - a journal of the @asm.org journals.asm.org/journal/msph... @casusscience.bsky.social @hzdr.bsky.social

journals.asm.org

mSphere Board of Editors

Members of the mSphere Editorial Board

020

ayakimovich.bsky.social @ayakimovich.bsky.social · 03/07/2025

German railways maintain an unmatched level of backward compatibility! 🧑‍💻

230

ayakimovich.bsky.social @ayakimovich.bsky.social · 30/06/2025

Drop me a line if you're in sunny 😎 Manchester today/tomorrow @casusscience.bsky.social

020

ayakimovich.bsky.social @ayakimovich.bsky.social · 29/06/2025

Maybe it is time to rethink the big conferences... #AI

010

Reposted by ayakimovich.bsky.social

Andrew L. Hufton @alhufton.bsky.social · 24/06/2025

I‘m looking forward to visiting the Center for Advanced Systems Understanding (#CASUS) tomorrow in Görlitz! I will be giving a talk to CASUS and other @hzdr.bsky.social researchers at 14:00. Details: www.casus.science?page_id=15608

casus.science

Event — Effectively publishing data-rich science – CASUS – Center for Advanced Systems Understanding

Andrew Hufton, Ph.D., Editor-in-Chief Patterns, Cell Press, Munich (Germany)

021

ayakimovich.bsky.social @ayakimovich.bsky.social · 19/06/2025

Had a blast talking about #BioMed #AI at the International Urogynecological Association (IUGA) conference in beautiful Barcelona @hzdr.bsky.social @casusscience.bsky.social

010

ayakimovich.bsky.social @ayakimovich.bsky.social · 15/05/2025

I'll be giving a talk and taking part in a panel at @embl.org Heidelberg next Wednesday. Drop me a line if you have time for a ☕ #AI4Science @casusscience.bsky.social @hzdr.bsky.social 🧪

051

ayakimovich.bsky.social @ayakimovich.bsky.social · 28/03/2025

Down the memory lane giving a talk at the Crick AI club today! 🧪

030

ayakimovich.bsky.social @ayakimovich.bsky.social · 18/03/2025

Helmholtz-ELLIS Workshop on Foundation Models in Science

000

ayakimovich.bsky.social @ayakimovich.bsky.social · 04/03/2025

When you cross the Atlantic and accidentally time travel presenting your phone's AI with a good old fashioned paradox 🤯

030

ayakimovich.bsky.social @ayakimovich.bsky.social · 27/02/2025

#AAAI in beautiful Philly, here we go, check out our contribution arxiv.org/abs/2406.04388

100

ayakimovich.bsky.social @ayakimovich.bsky.social · 12/02/2025

I am happy to share that I can now be found amongst the Helmholtz AI associates www.helmholtz.ai/applied-ai/a...

010

ayakimovich.bsky.social @ayakimovich.bsky.social · 11/02/2025

I will be giving a short Zoom talk on our latest work at the @helmholtzai.bsky.social Food for Thought Seminar events.hifis.net/event/2177/

events.hifis.net

051

ayakimovich.bsky.social @ayakimovich.bsky.social · 21/01/2025

🔍 Seeking an enthusiastic MSc or project student. Ideal candidate should have strong knowledge in PyTorch and Biochemistry. Dive into the dynamic world of proteins with us and contribute to advancing AI models. Let’s explore life at the molecular level together! 🧬💡 🧪 #AIinBiology

021

Reposted by ayakimovich.bsky.social

Andrew Steele @statto.bsky.social · 21/12/2024

The days will start getting longer… …wait for it… …now! Winter solstice 2024, December 21st, 09:20 UTC

313320

ayakimovich.bsky.social @ayakimovich.bsky.social · 19/12/2024

I am happy to share that I have been appointed an Associate Professor at the Institute of Computer Science of the Faculty of Computer Science and Mathematics of the University of Wroclaw.

040

ayakimovich.bsky.social @ayakimovich.bsky.social · 07/12/2024

A giant xmas cake (Stollen) was baked and cut up in Dresden today - a nearly 3-century-old tradition

030