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Anne-Sophie Pepin

@annesopepin.bsky.social
96 followers 170 following 1 posts

MSCA Postdoc fellow in Epigenetics at Helmholtz Munich | BSc & PhD in Pharmacology at McGill University | she/her

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Reposted by Anne-Sophie Pepin
Jan Żylicz @jzylicz.bsky.social · 25/04/2026
New paper out in @cp-cellstemcell.bsky.social. We uncover unexpected complexity in how metabolism changes when the embryo implants or when stem cells exit naive pluripotency, revealing a central role for dynamic TCA cycle rewiring in cell fate decisions. www.cell.com/cell-stem-ce...
cell.com
TCA cycle rewiring underpins histone acetylation sourcing and cell-fate transitions during exit from naive pluripotency
Using carbon tracing and functional experiments, Kafkia, Pladevall-Morera, et al. show that TCA cycle rewiring underlies mouse embryo implantation and the exit from naive pluripotency. In this context...
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Reposted by Anne-Sophie Pepin
Gonçalo Castelo-Branco @gocastelobranco.bsky.social · 05/11/2025
Our latest collaboration with @rongfan8.bsky.social, spatial triomics to investigate myelin and cortical brain development, and demyelination, spearheaded by Leslie Kirby in our lab @ki.se and Di Zhang in Rong's lab! Check it out @nature.com www.nature.com/articles/s41...
nature.com
Spatial dynamics of brain development and neuroinflammation - Nature
A tri-omic atlas of the mouse brain from postnatal day 0 to P21 reveals that layer-specific projection neurons have a role in coordinating axonogenesis and myelination.
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Reposted by Anne-Sophie Pepin
Epigenome Technologies @epigenometech.bsky.social · 06/11/2025
Epigenetics Update - Spatial dynamics of brain development and neuroinflammation go.nature.com/49AJu3Q Gonçalo Castelo-Branco and Rong Fan reporting in Nature #Epigenetics #Multiomics #BrainDevelopment #Neuroinflammation --- Discover the breakthrough at epigenometech.com
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Reposted by Anne-Sophie Pepin
Rob Schneider @robertife.bsky.social · 22/09/2025
#Jobalert 🚨: Please RT ! Looking for a #PhD student for exciting project on the interphase between epigenetics and cellular metabolism: How do (nuclear) metabolic enzymes reguate chromatin function ? #epigenomics, #epigenetics, #metabolism www.helmholtz-munich.de/en/ife/job-o...
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Reposted by Anne-Sophie Pepin
Epigenetics at Helmholtz Munich @epihmgu.bsky.social · 15/01/2025
Best first bsky post posible 4us: 2025 INTERNSHIP CALL IS NOW OPEN! Ready for an adventure this summer? Join our 2025 #Epigenetics #SummerInternship at Helmholtz Munich! Dive into AI, stem cells, nutrition and cutting-edge research, while gaining hands-on experience. Apply now! 👉 bit.ly/40g1BWL
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Reposted by Anne-Sophie Pepin
Wolfgang Huber @wkhuber.bsky.social · 03/01/2025
How to do differential expression with scRNAseq data? State of the art is "pseudo-bulk" analysis with RNA-seq methods like edgeR or DESeq2, where "cell type" is encoded as discrete categories. Biologically, discrete categories are not always the most appropriate concept.(1/3) doi.org/10.1038/s415...
doi.org
Analysis of multi-condition single-cell data with latent embedding multivariate regression - Nature Genetics
Latent embedding multivariate regression models multi-condition single-cell RNA-seq using a continuous latent space, enabling data integration, per-cell gene expression prediction and clustering-free ...
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