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Reposted by amitava banerjee

NSF-Simons NITMB @nitmb.bsky.social · 14/09/2026

We're kicking off the Biological Function in Space and Time: From Forces and Cues to Emerging Decision-making in Fates, States, and Shapes workshop! Thank you for joining us on the first day of the workshop! We're looking forward to a week of exciting discussion and collaboration

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amitava banerjee @amitava-immuno.bsky.social · 02/09/2026

This nicely covers some of our latest #TCR-antigen #cross-reactivity works #ImmunoSky

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amitava banerjee @amitava-immuno.bsky.social · 01/09/2026

Final call for submissions before we meet to curate the community perspectives on this central topic in #AIRR #sequencing #immunosky

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amitava banerjee @amitava-immuno.bsky.social · 19/08/2026

Happy to have contributed to this work! Awesome how realistic systems biology models based on emerging large-scale immunology databases and single cell organ atlases bring new insights about core biological processes.

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amitava banerjee @amitava-immuno.bsky.social · 12/08/2026

Very excited and grateful that our project has been selected for the 2026-2027 #AI /Big #Data/ Enabling #Technologies Seed #Grant of the @weillcornell.bsky.social/Mastercard Collaborative. 🎊

Signed letter in Weill Cornell Medicine letterhead with the text:

August 11, 2026

Amitava Banerjee, PhD
Postdoctoral Associate in Systems and Computational Biomedicine
Department of Systems and Computational Biomedicine

Dear Dr. Banerjee:
It is with great pleasure that I would like to inform you that you have been selected as a recipient of the 2026-2027 AI/Big Data/Enabling Technologies Seed Grant of the Weill Cornell/Mastercard Collaborative. Congratulations!

There was a very strong applicant pool, and your application was one of the most competitive. As a recipient of this award, you will receive a one-time grant of $50,000 covering the period from August 11, 2026 through July 31, 2027, and towards the development and completion of your project. Additionally, you will be required to participate in five events in the academic year as part of the Mastercard Collaborative’s Mentoring Program. Further information about this program will be forthcoming.

Please note that you must submit a progress report by September 1, 2027. Progress reports must include:

i. A two-page narrative consisting of the following sections: Major goals of the project; accomplishments under these goals; and goals for the coming year.

ii. A list of quantifiable measures of progress resulting from Mastercard Grant Program funding, such as new publications, new related funding, invited presentations, awards or honors, service on national or international committees, academic promotion, etc.

iii. A current “other support” document listing pending and active grants.

Congratulations again on this prestigious honor.

Sincerely,

Kyu Rhee, MD, PhD
Professor of Medicine, Department of Medicine

Judy Tung, MD
Associate Dean, Faculty Development
Chief, General Internal Medicine

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amitava banerjee @amitava-immuno.bsky.social · 04/08/2026

Excited to have been accepted into this fantastic workshop next month🪰🦠🧫If you are in Chicago area next month, would love to connect!

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amitava banerjee @amitava-immuno.bsky.social · 17/04/2026

Enjoyed it thoroughly! @cancerdynamics.bsky.social's leadership and organizing efforts in the field of AI X cancer dynamics is inspiring.

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amitava banerjee @amitava-immuno.bsky.social · 11/11/2025

Best conference I attended in a while, captures the full breadth of biophysics. So many refreshing ideas to understand living systems 🦋🐦‍⬛🪰🦠🪸🐙

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amitava banerjee @amitava-immuno.bsky.social · 27/07/2025

Our latest work featured in The Scientist! Sneha Khedkar Did a great job in summarizing the work accessibly while retaining some of the fine details. Happy reading! www.the-scientist.com/batman-signa...

the-scientist.com

BATMAN Signals T Cell Receptor Crossreactivity

A new AI tool that models how variations in peptides change T cell receptor binding could help design immunotherapies with fewer off-target effects.

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amitava banerjee @amitava-immuno.bsky.social · 25/07/2025

Gotta say the cshl.edu website looks extra cool today

Cold Spring Harbor Laboratory website screenshot showing ribbons in blue, and a cartoon of bats emerging from a cave with a bright red round object looking like a virus in the back. Title reads "BATMAN brings TCR therapy out of the shadows". Subtitle reads "A new AI model developed by CSHL quantitative biologists could help improve immunotherapy treatments not only for cancer but all human illness."

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amitava banerjee @amitava-immuno.bsky.social · 25/07/2025

Got new #TCR-pMHC data to send our way into BATCAVE? Wanna try BATMAN to predict targets of your #TCR? We would love to hear from you! 💽Database+codes: github.com/meyer-lab-cs... 💻BATMAN software + tutorials: github.com/meyer-lab-cs... 🦇Lets decode TCR-pMHC logic, one mutation at a time🦇

github.com

GitHub - meyer-lab-cshl/BATMAN-paper: Bayesian inference of Activation of TCR by Mutant Antigens

Bayesian inference of Activation of TCR by Mutant Antigens - meyer-lab-cshl/BATMAN-paper

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amitava banerjee @amitava-immuno.bsky.social · 25/07/2025

First postdoc paper with @hannahvmeyer.bsky.social on #TCR cross-reactivity database & modeling out now in Cell Systems: doi.org/10.1016/j.ce... BATCAVE database + Paper codes: github.com/meyer-lab-cs... BATMAN + Tutorial Notebooks: github.com/meyer-lab-cs... #ImmunoSky #T-cells #CancerImmunology

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amitava banerjee @amitava-immuno.bsky.social · 16/07/2025

Thrilled to visit @hhmijanelia.bsky.social to share how fine mapping of large-scale TCR-antigen interaction networks are revealing design principles and physical biology of the adaptive immune system! #ImmunoSky

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Reposted by amitava banerjee

Pieter Meysman @pmeysman.bsky.social · 27/05/2025

Third #ATCR25 talk by Hannah Meyer on using BATMAN to model the TCR cross reactivity space.

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amitava banerjee @amitava-immuno.bsky.social · 27/05/2025

Catch our latest work on modeling TCR cross-reactivity here

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amitava banerjee @amitava-immuno.bsky.social · 21/04/2025

Starting tomorrow with an exciting speaker lineup! Catch up with our work on thymic negative selection and T cell cross-reactivity! @cshlmeetings.bsky.social

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amitava banerjee @amitava-immuno.bsky.social · 16/04/2025

Catch up with some of my latest TCR work, to be presented by my PI, Dr. Hannah Meyer

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Reposted by amitava banerjee

AI x Bio Discovery @aixbiobot.bsky.social · 21/02/2025

Comprehensive epitope mutational scan database enables accurate T cell receptor cross-reactivity prediction [updated] BATCAVE & BATMAN predict TCR activation, off-target effects, & polyclonal responses.

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