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Amelia Barber

@ameliabarberphd.bsky.social
1.7K followers 694 following 91 posts

Group leader at @fzborstel.bsky.social and professor at @uni-kiel.de. CIFAR Azrieli Global Scholar Fungal pathoecology, antimicrobial resistance, and genome stuff. Always up for an adventure or bike ride. barber-lab.com

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Reposted by Amelia Barber
MwahahahahahadScientist @mads100tist.bsky.social · 25/09/2026
This is it. This is what everyone is enabling by humoring genAI: you spend months writing something that took you years to get at, for an opaque algorithm that a few control to spit a number and cut you off right there and then. This is what we're up against 🧪
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Team Thomma @teamthomma.bsky.social · 08/09/2026
📣...and now for something completely different: no plant pathogens, no Verticillium, but lichens! Driven by our lichen king🤴@ciarankelly.bsky.social with help of a.o. @hroevenich.bsky.social @usadellab.bsky.social @vivienrosenthal.bsky.social Watch for more in future! www.biorxiv.org/content/10.6...
biorxiv.org
Decoupled evolution of antimicrobial repertoires in lichen-forming fungi
Lichens are stable multipartite symbioses in which a fungal mycobiont associates with one or more photosynthetic partners while hosting complex microbiomes. Secreted antimicrobial proteins (AMPs) have...
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Amelia Barber @ameliabarberphd.bsky.social · 04/09/2026
If I was eligibile, I would love to do a second PhD with @danielcroll.bsky.social!
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Leibniz-Gemeinschaft @leibniz-gemeinschaft.de · 02/09/2026
🍄‍🟫Morchel, Pfifferling, Steinpilz; nicht nur in unseren Wäldern sprießt es jetzt. Pilze sind überall, in Luft, Wasser, auf und in unserem Körper. Am @leibniz-hki.de werden sie genau unter die Lupe genommen. Warum Pilze für uns gefährlich und unverzichtbar sind?👉 www.leibniz-magazin.de/alle-artikel...
Illustration in Türkis und Schwarz zum Thema Pilze. Verschiedene Pilzformen bilden eine fantasievolle Landschaft, in der kleine Wissenschaftler:innen und Sammler:innen unterwegs sind. Zu sehen sind außerdem Mikroorganismen, Insekten und weitere Pilzstrukturen. In der Mitte steht in weißer Schrift „Im Reich der Pilze“, darunter das Logo „Leibniz“.
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Amelia Barber @ameliabarberphd.bsky.social · 04/08/2026
Open science should be rewarded, not taken advantage of by bad actors!!
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Josie Bryant @josiebryant.bsky.social · 08/07/2026
Very proud of this preprint out of my lab, our first (of hopefully many) host-microbe spatial transcriptomics paper. www.biorxiv.org/content/10.6... Amazing insights into P. aeruginosa biology and chronic airway disease @cysticfibrosis.org.uk @sangerinstitute.bsky.social @asthmaandlung.org.uk
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Forschungszentrum Borstel, Leibniz Lungenzentrum @fzborstel.bsky.social · 20/07/2026
Neue Forschungsgruppe stärkt die funktionelle Mikrobiomforschung am @fzborstel.bsky.social: Prof. Dr. Amelia Barber übernimmt die W3-Professur für „Funktionelle Mikrobiomforschung chronischer Lungenerkrankungen“ und baut am FZB eine neue Forschungsgruppe auf: fz-borstel.de/de/aktuelles...
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Amelia Barber @ameliabarberphd.bsky.social · 30/06/2026
Exciting news! After a wonderful four years at @uni-jena.de, I'm excited to announce the next chapter as a group leader at @fzborstel.bsky.social and professor at @uni-kiel.de.
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Team Thomma @teamthomma.bsky.social · 30/05/2026
📣Last week another @biorxivpreprint.bsky.social dropped: "A fungal pathogen effector that shapes host plant microbiota kills bacteria through lipoteichoic acid binding and membrane disruption" a joint effort by @nicksnelders.bsky.social & @gabriellapetti.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
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Laura Fabre @laurafabre.bsky.social · 31/05/2026
Especially happy to be finishing this project, it taught me so much. doi.org/10.64898/202... Thanks for the journey, @ameliabarberphd.bsky.social and @kellerlab.bsky.social!
doi.org
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Amelia Barber @ameliabarberphd.bsky.social · 31/05/2026
New preprint day!! @laurafabre.bsky.social took 1k RNAseq samples and built an atlas of lncRNAs across four Aspergillus species, expanding the gene content of each by up to 20% and discovering a novel modulator of aflatoxin production. w/ @kellerlab.bsky.social.
doi.org
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Teresa O'Meara @teresaomeara.bsky.social · 14/05/2026
New preprint alert! www.biorxiv.org/content/10.6... from my lab and Evan Snitkin's lab Defining the Candidozyma auris pan-genome and essentiality
biorxiv.org
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Toby Baril @tobybarilbio.bsky.social · 09/04/2026
🎉 EarlGrey ParTEA v0.1.6 is here! Huge thanks to everyone who's tried the pipeline and shared feedback — your suggestions directly shaped these new features. 🍵 #TEworldwide #transposableelements #bioinformatics #genomics
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Marie-Claire Harrison @marie-clairehar.bsky.social · 08/04/2026
The long-awaited FLASH manuscript is finally out--check out some interesting results on predicting drug resistance in C. tropicalis, C. auris and other yeasts using a unique k-mer based model! www.biorxiv.org/content/10.6...
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Ilan Schwartz @germhuntermd.bsky.social · 21/03/2026
Exciting session at #fungal26 in Asilomar on Emerging and are-emerging Fungal Pathogens First talk is from award winning scientist, @ameliabarberphd.bsky.social on Candida parapsilosis #MedMycoSky
Woman at a lectern
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Neil Gow @neil-gow.bsky.social · 02/03/2026
Do consider coming to this premium fungal AMR conference in Bangkok in November. @youngecmm.bsky.social @youngisham.bsky.social @ishamycology.bsky.social @mrccmm.bsky.social @bsmm-meeting.bsky.social
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AspGRPC @aspgrpc.bsky.social · 02/03/2026
With just two weeks to go until the 33rd Fungal Genetics Conference at Asilomar starts, we're happy to reveal the programme for Asperfest, running 16th-17th March: aspgrpc.com/asperfest/ Will we see you at Asperfest and/or FGC?
aspgrpc.com
Asperfest
Next event Asperfest 22 22nd International Aspergillus Meeting March 2026 Asilomar, California, USA 22nd International Aspergillus Meeting Merrill Hall Monday 16th March 19:00 – 22:00 Poster …
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Bas E. Dutilh @bedutilh.bsky.social · 27/02/2026
The VEO Group at @uni-jena.de @microverse.bsky.social has an open position for a Bioinformatics Technician until the end of 2032! Join us to unlock the secrets of the Microverse from big datasets: jobs.uni-jena.de/jobposting/0...
jobs.uni-jena.de
Bioinformatics technician
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Grant Nickles @grantnickles.bsky.social · 12/11/2025
Do you work with the Aspergillus fumigatus model isolates Af293 or CEA10? If so, we want to collaborate with you! In return for your lab's participation we will sequence your strain for free and provide co-authorship on the final paper. Learn more here: asp-fumi-seq-project-2025.vercel.app
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Eva Stukenbrock @estukenbrock.bsky.social · 27/01/2026
What enables a fungus to invade a mammal host? @marco-guerreiro.bsky.social unravels signatures of translation adaptation among pathogenic and non-pathogenic species of Trichosporonales. See more: www.nature.com/articles/s41...
nature.com
Genomic and physiological signatures of adaptation in pathogenic fungi - Nature Communications
Emerging fungal pathogens have detrimental impacts on crops, animals, and humans, however little is known about their transition to a pathogenic lifestyle. This study demonstrates that the transition ...
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John Lovell @jotlovell.bsky.social · 30/01/2026
This article is now published! academic.oup.com/nargab/artic... We’ve added a few new analyses. First off, we show that, while gene presence absence variation (PAV) scales with evolutionary distance in both plants and animals, the base level and rate of accrual are both twice as high in plants.
academic.oup.com
Evolutionary and methodological considerations when interpreting gene presence–absence variation in pangenomes
Abstract. While graph-based pangenomes have become a standard and interoperable foundation for comparisons across multiple reference genomes, integrating p
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Asiya Gusa @asiya-gusa.bsky.social · 17/01/2026
Sharing our lab’s first publication! Probing clinical isolates of Cryptococcus, a disease-causing fungus of the lungs and brain, we found multiple heat-mobile elements that ‘jump’ in the genome at body temperature (!) with the ability to drive adaptive changes. journals.plos.org/plosgenetics...
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Amelia Barber @ameliabarberphd.bsky.social · 14/01/2026
Looking forward to bringing the 🍄 perspective to this exciting meeting on AMR and microbial genomics!
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Mark A. Hanson @hansonmark.bsky.social · 13/01/2026
We've got ISSUES. Literally. We scraped >100k special issues & over 1 million articles to bring you a PISS-poor paper. We quantify just how many excess papers are published by guest editors abusing special issues to boost their CVs. How bad is it & what can we do? arxiv.org/abs/2601.07563 A 🧵 1/n
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Gulnara Tagirdzhanova @metalichen.bsky.social · 12/01/2026
⚡️Fully funded #PhD position in my lab at Stockholm University / SciLifeLab! If you’re interested in #lichens, #symbiosis, fungal biology, or meta-omics, please apply. Deadline Feb 1. Read more here: su.varbi.com/en/what:job/...
Black field with a macro image of a bright orange lichen Xanthoria in one of the corner. Little diagrams showing a structure of a lichen thallus with different layers in grey and green, a phylogenetic tree, and an alphafold generated structure of a protein. White text says "PhD position in Stockholm University / SciLifeLab. 
Lichen Biology, Symbiosis, Microbial Ecology & Evolution,Meta-omics
Fully funded for 4 years. Start Apr-Sep 2026. Deadline for application: Feb 1st."
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Balance of the Microverse @microverse.bsky.social · 18/12/2025
Zoom in, look closer! Our Microverse Wimmelbild hides the faces, ideas & discoveries that made 2025 unforgettable. Can you spot them all? Season’s greetings & here’s to a curious, collaborative 2026! Illustration: Hannes Naumann
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Marion Perrier @marionperrier.bsky.social · 04/12/2025
Anyone looking for roommates for #Fungal26 in Asilomar? I will participate and I am looking for someone to share a room for the week! I'm a female PhD student, looking to share a room with another female. Please DM me if you'd like to team up with me 😄 Reposts appreciated!
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Amelia Barber @ameliabarberphd.bsky.social · 25/11/2025
Third lab retreat in the books! We once again headed to the city of Eisenach for two days of project presentations, soft skills workshops, and science discussions. We also played the beautiful Mycology board game!
Six smiling people stand in two rows in a seminar room. Each is holding a large piece of paper with drawing summarising the presentations of another group member.  Six smiling people are standing together outside, dressed in winter coats and hats. In the background is the Wartburg Castle.Six smiling people sit around a table playing the board game Mycology
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Amelia Barber @ameliabarberphd.bsky.social · 25/11/2025
Third lab retreat in the books! We once again headed to the city of Eisenach for two days of project presentations, soft skills workshops, and science discussions. We also played the beautiful Mycology board game!
Six smiling people stand in two rows in a seminar room. Each is holding a large piece of paper with drawing summarising the presentations of another group member.  Six smiling people are standing together outside, dressed in winter coats and hats. In the background is the Wartburg Castle.Six smiling people sit around a table playing the board game Mycology
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Aaron Vogan @fungage-lab.bsky.social · 19/11/2025
We're looking for a PhD student! If you're interested in #fungal #genomics & #TEs, meiotic drive, or pathogens, please consider applying. The project is about toxin/antidote genes in the human fungal pathogen A. fumigatus. uu.varbi.com/en/what:job/...
Image of yeast spotted on an agar plate. Some grow well, others are dying.
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Toby Baril @tobybarilbio.bsky.social · 12/11/2025
TEs aren’t just genomic parasites, they’re also engines of genomic novelty. Our new study with ~2,000 Z. tritici genomes shows repeated TE mobilization waves during global expansion. With @danielcroll.bsky.social & @guidopuccetti.bsky.social 🧬 www.nature.com/articles/s41... #TEworldwide
nature.com
Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen - Nature Communications
In this study, the authors analysed a large genomic dataset to trace how jumping genes shaped the global spread of a major wheat pathogen and reveal bursts of activity over decades that drove adaptati...
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Daniel Croll @danielcroll.bsky.social · 29/10/2025
@tobybarilbio.bsky.social and I are very excited to release MycoMobilome! A very extensive effort to discover, QC and annotate TEs across the fungal kingdom. 👉 Ready-to-use for your own genome with a simple tutorial! 👉 Metadata about TEs discovered in your genome! 👉 Contribute and get recognition!
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Toby Baril @tobybarilbio.bsky.social · 29/10/2025
1/ Ever needed to annotate TEs in a fungal genome, but didn't know where to start? We have released #MycoMobilome, a community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom, constructed from >4,000 fungal genomes! www.biorxiv.org/content/10.1...
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Balance of the Microverse @microverse.bsky.social · 29/10/2025
A great turnout for our latest Microverse Seminar! 🍕🔬 @ameliabarberphd.bsky.social, Junior Group Leader #FungalInformatics, shared fascinating insights in her talk “From Ecology to Genomes: Unraveling Fungal Pathogenicity Across Scales.” Lively discussions and great connections followed!
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Amelia Barber @ameliabarberphd.bsky.social · 17/10/2025
Congrats to the group's first PhD student, the newly minted Dr. Brassington!! Phillip relocated back to Oceania in the period between submitting his dissertation and his oral defense, so we had to make do with a virtual defense, but I am still incredibly proud of him.
The heading reads, 'Congrats Phillip!!'. Below that, there is a four image grid from a zoom meeting and depcting a graduation mortarboard and 3 people/groups smiling and celebrating.
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Jason Stajich @hyphaltip.bsky.social · 16/10/2025
Registration open for #Fungal26 genetics-gsa.org/fungal-2026/ at Asilomar.
genetics-gsa.org
Homepage - 33rd Fungal Genetics Conference
Visit our website to learn more.
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Nature Communications @natcomms.nature.com · 16/10/2025
Population structure in a fungal human pathogen is associated with clinical prevalence #Aspergillus flavus @annemakerofhats.bsky.social ‪@ameliabarberphd.bsky.social‬ @rokaslab.bsky.social #fungi #infection #PopulationGenomics #mycology
bit.ly
Population structure in a fungal human pathogen is potentially linked to pathogenicity - Nature Communications
Genetic diversity between clinical and environmental fungal isolates of Aspergillus flavus is poorly studied. Here, the authors analysed genomic data from a global set of clinical and environmental A. flavus isolates and report that clinical prevalence is associated with population structure.
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Daniel Croll @danielcroll.bsky.social · 16/10/2025
Very excited to see the final version of our kingdom-scale fungal genome defense manuscript out in @plosbiology.org ! This work has been a major project of @tbadet.bsky.social during his time in our lab. We hope to stimulate much more exciting work on fungal TEs. journals.plos.org/plosbiology/...
journals.plos.org
Phylogenomic signatures of repeat-induced point mutations across the fungal kingdom
Fungal genome size variation is largely driven by transposable elements and shaped by lineage-specific genome defense mechanisms. This study shows that the presence or absence of repeat-induced point ...
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Michael Habig @michaelhabig.bsky.social · 13/10/2025
Want to understand how entire fungal chromosomes can be horizontally transferred? Join us to unravel the mechanism/consequences of horizontal chromosome transfer in a fungal pathogen as part of an ERC-funded project. Postdoc/PhD positions available. fungal-evolutionary-genetics.de/open-positio...
fungal-evolutionary-genetics.de
Open Positions
ERC-funded project on the mechanism of horizontal transfer of entire fungal chromosomes PhD PostDoc
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Annie Hatmaker, Ph.D. @annemakerofhats.bsky.social · 07/10/2025
If you saw my talk on the population structure of #Aspergillus flavus at Fungal Genetics in 2024, you might have heard someone ask "how does Aspergillus oryzae fit into the picture?" If so, you heard my answer was "wait and see--we're working on this exact topic" Well, the wait is over! Preprint ⬇️
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Felix M Key @keyfm.bsky.social · 15/09/2025
Open postdoc position in in my lab in Berlin @mpiib-berlin.mpg.de. Join us to push the frontier in ancient microbial genomics. Please apply until Oct 17th. Reach out in case you have any questions. www.mpiib-berlin.mpg.de/2193291/job_...
mpiib-berlin.mpg.de
Postdoctoral position (m/f/d) | Evolutionary Genetics
We are offering a Postdoctoral position in Evolutionary Genetics (m/f/d)
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Amelia Barber @ameliabarberphd.bsky.social · 11/09/2025
Fabio doing some excellent scicomm about his postdoc project in the group!
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Judith Behnsen @judith-behnsen.bsky.social · 03/09/2025
Excited to share our new publication, out today in Nature! www.nature.com/articles/s41.... @kanchanj.bsky.social led this fascinating fungal-bacterial interaction project. We are grateful for our wonderful collaborators Brian Peters and David Underhill.
nature.com
Commensal yeast promotes Salmonella Typhimurium virulence - Nature
Commensal Candida albicans enhances the virulence and dissemination of Salmonella enterica subsp. enterica serovar Typhimurium.
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Amelia Barber @ameliabarberphd.bsky.social · 27/08/2025
Just a few more days to apply! ⏰
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Amelia Barber @ameliabarberphd.bsky.social · 22/08/2025
I thought the Aspergillus fumigatus pan-genome was pretty wild when we started this project. Aspergillus flavus said, "hold my beer..." Not only does it have a strong population structure with differences between environmental and clinical strains, only 58%of genes are conserved across the species!
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Annie Hatmaker, Ph.D. @annemakerofhats.bsky.social · 18/08/2025
Really interesting work. Bottom line: re-annotate everything using the same pipeline for pangenome studies!
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Amelia Barber @ameliabarberphd.bsky.social · 15/08/2025
A nice walkthrough on the limitations of generic slide titles and how assertive titles really help keep you on track and your audience following your desired narrative. My group can attest that I agree 💯% that slides should have a concrete summary statement as the title, with very few exceptions.
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Amelia Barber @ameliabarberphd.bsky.social · 14/08/2025
Aspergillus fumigatus reference strain Af293 carries a mycovirus that boosts heat+oxidative stress resistance and infection fitness. 😲💥 I encourage you to check out Neta's thread and I'm delighted my group could play a small role in this exciting study!!
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Jason Stajich @hyphaltip.bsky.social · 06/08/2025
New #preprint from talented graduate student for a workflow we have been using for a while into a formal usage www.biorxiv.org/content/10.1...
biorxiv.org
Phyling: phylogenetic inference from annotated genomes
Phyling is a fast, scalable, and user-friendly tool supporting phylogenomic reconstruction of species phylogenies directly from protein-encoded genomic data. It identifies orthologous genes by searchi...
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