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Adela Alcolea-Medina

@adelaam.bsky.social
93 followers 261 following 15 posts

Farmacéutica especialista en Microbiología y Parasitología Clínica | Now Consultant Clinical Scientist | Metagenomics | NGS

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Reposted by Adela Alcolea-Medina
Paul Bernal @paulbernal.bsky.social · 11/06/2026
Mine is generally addressed to Reviewer 2, who is petty, ignorant, unfair and self-obsessed.
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Reposted by Adela Alcolea-Medina
Adela Alcolea-Medina @adelaam.bsky.social · 04/02/2026
Our latest preprint compares the dual-arm nanopore workflow with the respiratory metagenomics protocol currently implemented across the NHS, using clinical samples. 👉 www.researchsquare.com/article/rs-8... @nhsmetagenomicsnet.bsky.social @lukebsnell.bsky.social @ronandoyle.bsky.social
researchsquare.com
Comparison of nanopore methods for respiratory clinical metagenomics
Respiratory metagenomic sequencing is increasingly used for rapid, pan-microbial diagnosis in clinical practice, but there is a need to evaluate different wet lab protocols for performance and feasibi...
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Adela Alcolea-Medina @adelaam.bsky.social · 04/02/2026
Our latest preprint compares the dual-arm nanopore workflow with the respiratory metagenomics protocol currently implemented across the NHS, using clinical samples. 👉 www.researchsquare.com/article/rs-8... @nhsmetagenomicsnet.bsky.social @lukebsnell.bsky.social @ronandoyle.bsky.social
researchsquare.com
Comparison of nanopore methods for respiratory clinical metagenomics
Respiratory metagenomic sequencing is increasingly used for rapid, pan-microbial diagnosis in clinical practice, but there is a need to evaluate different wet lab protocols for performance and feasibi...
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Reposted by Adela Alcolea-Medina
Stuart Neil @tetherin.bsky.social · 02/02/2026
Heroic effort by Luke Snell, Suzy Pickering and Rui Galao and many colleagues at KCL, clinical collaborators at GSTT and of course the individuals concerned, several of whom sadly passed away.
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Reposted by Adela Alcolea-Medina
Stuart Neil @tetherin.bsky.social · 02/02/2026
This is finally out. Very short take home. All the variation in spike that produced the immune escape characteristics of Omicron can occur in one single persistently infected individual over the period of a year. This is why persistent infections matter www.cell.com/cell-reports...
cell.com
Antibody escape drives emergence of diverse spike haplotypes resembling variants of concern in persistent SARS-CoV-2 infections
Snell et al. develop sequencing methodology to identify full-length spike haplotypes and show that persistent SARS-CoV-2 infections drive divergent haplotype emergence, accelerating viral evolution an...
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Reposted by Adela Alcolea-Medina
CMI Communications @cmicomms.bsky.social · 29/01/2026
📣 Foley et al assess #syphilis PCR & serology in >8K Australian patients #Serology: still essential for first infections & reinfections #PCR: limited add'l benefit in first infections; w/ serology can improve detection of reinfections #IDSky #clinmicro #diagnosticstewardship ow.ly/hh0M50Y5j50
ow.ly
The utility of combined syphilis PCR and serology during an outbreak in Western Australia: A multicentre retrospective diagnostic evaluation
Syphilis has re-emerged as a global public health concern. Although serology is well established, the role of PCR remains unclear. We evaluated the di…
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Reposted by Adela Alcolea-Medina
NHS Respiratory Metagenomics Network @nhsmetagenomicsnet.bsky.social · 24/11/2025
Today marks the end of #WorldAMRAwarenessWeek! Over the last week on LinkedIn, we have been sharing how respiratory metagenomics supports smarter antimicrobial use and personalised care. 👉 Follow our LinkedIn page to find out more: www.linkedin.com/company/1095... #AMR #WAAW25 #Metagenomics
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Reposted by Adela Alcolea-Medina
NHS Respiratory Metagenomics Network @nhsmetagenomicsnet.bsky.social · 24/11/2025
As #WorldAMRAwarenessWeek wraps up, we share how respiratory metagenomics is transforming care. Faster and accurate detection of pathogens help clinicians target treatment sooner and reduce unnecessary antibiotics, whilst improving personalised care and antimicrobial stewardship across the NHS.
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Reposted by Adela Alcolea-Medina
NHS Respiratory Metagenomics Network @nhsmetagenomicsnet.bsky.social · 16/12/2025
💬 “Learn at scale, deliver at pace.” At today’s Genomics Summit, Prof. Ian Abbs highlighted the NHS Respiratory Metagenomics Network as a great example of partnerships driving innovation & improving clinical practice. 📩 Let’s keep the conversation going! #NHSGenomics2025 #Metagenomics #Genomics
Professor Ian Abbs on a panel table in front of a screen that states NHS Genomisc Healthcare Summit, Utilising networks to drive innovation and commisioning.A title slide stating NHS Respiratory Metagenomics Network, Professor Ian Abbs, NHS SRO
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Reposted by Adela Alcolea-Medina
NHS Respiratory Metagenomics Network @nhsmetagenomicsnet.bsky.social · 29/12/2025
What a year! From expanding to new sites, to celebrating publications and hosting our second annual network event, 2025 has been full of milestones for the network. 🎥 Press play to have a look back at some of what we have achieved this year! #Metagenomics #LifeSciences
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Reposted by Adela Alcolea-Medina
NHS Respiratory Metagenomics Network @nhsmetagenomicsnet.bsky.social · 25/11/2025
We are proud to be working collaboratively with multiple sites including hospitals and laboratories, across the UK, to help scale and advance respiratory metagenomic testing in the NHS. 👇 Check out our map below to see sites that are currently involved in the network. #Metagenomics
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Reposted by Adela Alcolea-Medina
Tiffany Lowe-Power stands with Minnesota @tlowepower.bsky.social · 10/12/2025
This is what systematic racism looks like.
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Reposted by Adela Alcolea-Medina
UW Infectious Disease Fellowship Program @uwidfellowship.bsky.social · 15/11/2025
H3N2 subclade K dominating early flu season in UK. Emerged at end of the southern hemisphere flu season, varies from the J.2 subclade chosen for this year’s vaccination. Current vaccine still thought to offer protection so… Get your flu Vax! #IDSky #vaccines www.gavi.org/vaccineswork...
gavi.org
Everything you need to know about ‘subclade K’ flu - and vaccine protection against it
As a new branch of H3N2 influenza gains ground, we explore what it means for this season’s flu vaccine.
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Reposted by Adela Alcolea-Medina
Ronan Doyle @ronandoyle.bsky.social · 20/10/2025
Our new preprint covering the improvements we made to our respiratory metagenomic assay is out now: www.medrxiv.org/content/10.1... ✅ Now implemented in 6 NHS hospitals ✅ Increased sensitivity ✅ Increased pathogen genome coverage (1/3)
medrxiv.org
Optimisation of whole cell human depletion provides increased sensitivity and microbial genome coverage from respiratory metagenomic assays
Metagenomics is being adopted worldwide as a laboratory developed test. We have previously reported a unified metagenomic method for the direct detection of microorganisms from respiratory samples, de...
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Reposted by Adela Alcolea-Medina
medRxivpreprint @medrxivpreprint.bsky.social · 13/10/2025
Optimisation of whole cell human depletion provides increased sensitivity and microbial genome coverage from respiratory metagenomic assays www.medrxiv.org/content/10.1101/202…
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Reposted by Adela Alcolea-Medina
medRxivpreprint @medrxivpreprint.bsky.social · 10/10/2025
Implementing rapid pan-microbial metagenomics in paediatric intensive care www.medrxiv.org/content/10.1101/202…
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Reposted by Adela Alcolea-Medina
King's Faculty of Life Sciences & Medicine @kingslsm.bsky.social · 02/10/2025
What if ICU doctors could diagnose infections in hours, not days? A new test, developed from a PhD project at King's, now makes this possible.🔬 🔗 www.kcl.ac.uk/metagenomics...
kcl.ac.uk
Metagenomics testing: From PhD project to the ICU
A new diagnostic test that can detect a broad range of microorganisms in a single sample and give same-day results has been shown to improve the diagnosis and treatment of patients with…
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Reposted by Adela Alcolea-Medina
The Lancet Microbe @lancetmicrobe.bsky.social · 02/10/2025
New research article Rapid pan-microbial metagenomics for pathogen detection and personalised therapy in the intensive care unit: a single-centre prospective observational study www.thelancet.com/journals/lan... #IDSky #ClinMicro #OpenAccess #OA
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Adela Alcolea-Medina @adelaam.bsky.social · 02/10/2025
Rapid pan-microbial metagenomics for pathogen detection and personalised therapy in the intensive care unit: a single-centre prospective observational study - The Lancet Microbe www.thelancet.com/journals/lan...
thelancet.com
Rapid pan-microbial metagenomics for pathogen detection and personalised therapy in the intensive care unit: a single-centre prospective observational study
Respiratory metagenomics for ICU patients showed good performance and turnaround time, and diverse clinical and public health benefits. This ability to inform both personalised patient therapy and inf...
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Reposted by Adela Alcolea-Medina
European Medicines Agency @ema.europa.eu · 23/09/2025
Paracetamol remains an important option to treat pain or fever in pregnant women. Following rigorous assessment of the available scientific data, we find no evidence that taking paracetamol during pregnancy causes autism in children. Read more 👉 www.ema.europa.eu/en/news/use-...
ema.europa.eu
Use of paracetamol during pregnancy unchanged in the EU | European Medicines Agency (EMA)
Paracetamol medicines can be used in pregnancy, in accordance with official recommendations
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Reposted by Adela Alcolea-Medina
Juan E. Losa @juanelosag.bsky.social · 28/05/2025
El “Acuerdo de la Organización Mundial de la Salud sobre Pandemias” (20 de Mayo de 2025) establece un marco integral de acción ante pandemias, que incluye la prevención de zoonosis, la preparación de los sistemas de salud y la equidad en la respuesta. jamanetwork.com/journals/jam...
jamanetwork.com
The WHO Pandemic Agreement
This Viewpoint describes the World Health Assembly’s newly adopted Pandemic Agreement, which lays a framework for action including preventing zoonotic spillovers, health system preparedness, and equit...
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Reposted by Adela Alcolea-Medina
Clinical Infectious Diseases @cidjournal.bsky.social · 03/05/2025
Real-Time Genomic Surveillance for Enhanced Healthcare Outbreak Detection and Control: Clinical and Economic Impact ✅ Just Accepted ⭐ Editor's Choice ✍️ @sundermannaj.bsky.social #IDSky
doi.org
Real-Time Genomic Surveillance for Enhanced Healthcare Outbreak Detection and Control: Clinical and Economic Impact
Current methods are insufficient alone for outbreak detection in hospitals. Real-time genomic surveillance offers the potential to detect otherwise unidentified outbreaks.
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Reposted by Adela Alcolea-Medina
bioRxivpreprint @biorxivpreprint.bsky.social · 23/04/2025
Antibody escape drives emergence of diverse spike haplotypes resembling variants of concern in persistent SARS-CoV-2 infections www.biorxiv.org/content/10.1101/202…
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Reposted by Adela Alcolea-Medina
Onisillos @onisillos.bsky.social · 13/04/2025
Next speaker was Luke Blagdon Snell with Same-day pan-microbial metagenomics for personalized therapy and pathogen surveillance on the intensive care unit: a single-centre prospective study (escmid.reg.key4events.com/AbstractList...).
escmid.reg.key4events.com
Same-day pan-microbial metagenomics for personalised therapy and pathogen surveillance on the intensive care unit: a single-centre prospective study
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Reposted by Adela Alcolea-Medina
Onisillos @onisillos.bsky.social · 13/04/2025
Robbie Hammond presented next with Implementing same-day respiratory metagenomic diagnostics in paediatric intensive care (escmid.reg.key4events.com/AbstractList...). Their method had a turnaround time of 6 hours.
escmid.reg.key4events.com
Implementing same-day respiratory metagenomic diagnostics in paediatric intensive care
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Reposted by Adela Alcolea-Medina
Oscar Torres @oscart32.bsky.social · 11/04/2025
New preprint! We developed a fast method that allows the use of hybridization capture workflows with @nanoporetech.com without additional ligation-based steps! We validated our method using targeted viral metagenomics @twistbioscience.com and Viral WGS @Agilent www.medrxiv.org/content/10.1...
medrxiv.org
Nanopore-based hybridization capture approaches for targeted viral metagenomics and whole-genome sequencing
Hybridization capture approaches can significantly increase the sensitivity of metagenomics. However, their implementation with Oxford Nanopore Technologies (ONT) sequencing has been limited due to th...
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Reposted by Adela Alcolea-Medina
Oxford Nanopore @nanoporetech.com · 31/03/2025
Join us at #ESCMID to discover how experts are utilising real-time Oxford Nanopore sequencing to deliver actionable insights into outbreak detection, pathogen identification, and AMR profiling faster than traditional methods. nanoporetech.com/about/events...
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Reposted by Adela Alcolea-Medina
Adela Alcolea-Medina @adelaam.bsky.social · 29/03/2025
www.nature.com/collections/...
nature.com
Top 25 downloaded papers of 2024
The 25 most downloaded papers published in Communications Medicine in 2024
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Adela Alcolea-Medina @adelaam.bsky.social · 29/03/2025
www.nature.com/collections/...
nature.com
Top 25 downloaded papers of 2024
The 25 most downloaded papers published in Communications Medicine in 2024
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Reposted by Adela Alcolea-Medina
Adela Alcolea-Medina @adelaam.bsky.social · 04/02/2025
This is the updated metagenomics protocol for respiratory samples search.app/V491AEp3tmB7...
search.app
Pan-microbial metagenomics protocol v1.2Public workspaceCritical
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Adela Alcolea-Medina @adelaam.bsky.social · 04/02/2025
This is the updated metagenomics protocol for respiratory samples search.app/V491AEp3tmB7...
search.app
Pan-microbial metagenomics protocol v1.2Public workspaceCritical
453
Reposted by Adela Alcolea-Medina
Antonio Guerrero MD PhD @guerreroespejo.bsky.social · 08/12/2024
"The method demonstrates encouraging preliminary results within a 7 h process, achieving good sensitivity for the detection of #bacteria and #viruses." "It holds promise as a clinically deployable workflow suitable for evaluation in routine microbiology laboratories."
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Adela Alcolea-Medina @adelaam.bsky.social · 17/11/2024
Bacteria, virus, and fungi detection in just 6 hours from respiratory samples! A unified metagenomic approach for clinical diagnostics. www.nature.com/articles/s43... #Genomics #Microbiology #Metagenomics
nature.com
Unified metagenomic method for rapid detection of microorganisms in clinical samples - Communications Medicine
Alcolea-Medina et al. develop a rapid, unified metagenomics method for the detection of bacteria, fungi, and viruses from clinical respiratory samples. This method reduces human DNA content, allowing ...
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