iiinova — where your digital self keeps evolving

Reposted by Martin Schätz

Agustin Corbat @acorbat.bsky.social · 09/09/2026

I’m very grateful that the course was strongly international: @lecumberry.bsky.social participated on-site for the full course, and @sugansivaguru.bsky.social plus @schatzcz.bsky.social joined in remote sessions. Thank you so much: FUNDACEN, @latambioimaging.bsky.social and @globias.bsky.social!!!

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Reposted by Martin Schätz

Vad Pérez @vadperez.bsky.social · 09/06/2026

Ready to be tested! VibeScaler - an app to calibrate microscopy images using a pattern printed on (any?) commercial office laser printer. vadperez.github.io/vibescaler/V...

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Reposted by Martin Schätz

Charles University, Faculty of Science @sciencecharles.bsky.social · 14/05/2026

New in Nature Methods: The launch of GloBIAS, a global society for bioimage analysis. Co-authored by Martin Schätz (Charles University/UCT Prague), this initiative aims to standardise how we extract data from microscopic images across 14 countries. See: doi.org/10.1038/s415...

rdcu.be

GloBIAS: strengthening the foundations of bioimage analysis

Nature Methods - GloBIAS: strengthening the foundations of bioimage analysis

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Reposted by Martin Schätz

Agustin Corbat @acorbat.bsky.social · 30/04/2026

Thrilled to see @globias.bsky.social in Nature Methods! 🔬 Huge thanks to everyone who took the survey—more results are on the way!📊 Want to help? Join us to coordinate regional surveys or global efforts. Let’s build this community together!🤝 Read: www.nature.com/articles/s41... #GloBIAS #BioImage

lnkd.in

This link will take you to a page that’s not on LinkedIn

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Reposted by Martin Schätz

Robert Haase @haesleinhuepf.bsky.social · 12/04/2026

Vision [Language] Embeddings are a powerful tool to dive into relationships between images. If you enjoy traveling through them in 3D as much as I do, try out Vision Embedding Space Traveling (VEST)! github.com/ScaDS/vest Bon voyage! ✈️

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Martin Schätz @schatzcz.bsky.social · 29/04/2026

Out now in Nature Methods: "GloBIAS: strengthening the foundations of bioimage analysis." A new Correspondence article published with @springernature.com Access here: rdcu.be/feOiw #research #bioimageanalysis doi.org/10.1038/s415...

rdcu.be

GloBIAS: strengthening the foundations of bioimage analysis

Nature Methods - GloBIAS: strengthening the foundations of bioimage analysis

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Reposted by Martin Schätz

GloBIAS @globias.bsky.social · 22/04/2026

The GloBIAS Working Group survey 2024 has reached another important milestone with the publication of a short communication: GloBIAS: strengthening the foundations of bioimage analysis, in Nature Methods. doi.org/10.1038/s415... A big thank you to everyone involved Join GloBIAS at www.globias.org !

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Reposted by Martin Schätz

Vad Pérez @vadperez.bsky.social · 17/09/2025

Martin Schatz @schatzcz.bsky.social giving an intro to QuPath to students of Instituto Mexicano del Seguro Social research units as part of his @embl.org @globalbioimaging.bsky.social job shadowing program.

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Martin Schätz @schatzcz.bsky.social · 01/09/2025

Check out my recently published #ImageJ based #opensource tool. It helps clinicians quantify #COVID_19 lung damage from CT scans, providing a reproducible, semi-automatic #analysis crucial for diagnosis. And it works in restricted hospital computer environments! 🩺 Read more: doi.org/10.12688/f10...

doi.org

F1000Research Article: Estimation of Covid-19 lungs damage based on computer tomography images analysis.

Read the latest article version by Martin Schätz, Olga Rube&scaron;ová, Jan Mare&scaron;, David Girsa, Alan Spark, at F1000Research.

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Reposted by Martin Schätz

Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 10/07/2025

Speaking of "couldn't have done it without", the amazing author team of @acorbat.bsky.social, @walthercg.bsky.social, @larual.bsky.social, Nick Condon, Alessandro Felder, @schatzcz.bsky.social, Bettina Schmerl, Ko Sugawara, Clara Prats, @ahklemm.bsky.social, @flevet.bsky.social, (...) 4/x

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Reposted by Martin Schätz

GloBIAS @globias.bsky.social · 13/01/2025

Call 4 Help Pilot Event by GloBIAS, 22 Jan–5 Feb 2025! Offering life scientists a chance for hands-on guidance & support for #bioimage_analysis using Napari, Ilastik & CellProfiler. 💡 Details: www.globias.org/activities/c... 🔗 Sign up! Application until Friday 17 Jan: forms.gle/7hsJgramrFXB...

forms.gle

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Reposted by Martin Schätz

Erick Ratamero @erickratamero.com · 10/11/2024

I don't think I saw this on social media at all: a bunch of very clever people (including our team) has put together a federated bioimage repository based on OME-Zarr with 500TB of data in 4 months! ome.github.io/ome2024-ngff...

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Reposted by Martin Schätz

Robert Haase @haesleinhuepf.bsky.social · 09/11/2024

I made a BioImage Analysts Starter pack. Reachout if you're missing on it 🔬💻🌐 go.bsky.app/2hPEBDu

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Reposted by Martin Schätz

Senter for vitenskapsteori @vitenskapsteori.bsky.social · 29/11/2023

Our professor, Kjetil Rommetveit, is one of the speakers at this timely hybrid event. Tomorrow at 4pm CET, he will present the paper "(How) can you code rights and morality into digital infrastructures and AIs?" Scan the QR code below to read more and register🧪 🇪🇺 #PhilSci #philtech #STS #moralPhil

An event poster for the event AI and the future of protest politics, with names of speakers, dates, times and organizers.

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