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Yufeng Shen

@yshen.bsky.social
225 followers 171 following 10 posts

Computational genomics and human genetics. Associate Professor @ Columbia University Lab: www.columbia.edu/~ys2411

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Reposted by Yufeng Shen
Harris Wang @harriswang.bsky.social · 09/09/2026
📢 Our Dept. of Systems Biology @columbiasysbio.bsky.social has a faculty opening in the broad area of quantitative biology (Comp/AI/Bio, etc.). Come join our department in NYC! Please circulate/RT. Apply: apply.interfolio.com/192256 Deadline: Nov 1, 2026. systemsbiology.columbia.edu
systemsbiology.columbia.edu
Home | Columbia University Department of Systems Biology
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Reposted by Yufeng Shen
Sasha Gusev @sashagusevposts.bsky.social · 13/03/2026
Here's a (daily updated) NIH grant listing that doesn't suck: sashagusev.github.io/nih-grants-f...
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Chao Hou @chaohou.bsky.social · 24/01/2026
Our work of protein language models trained on biophysical dynamics was just published in @pnas.org. URL: doi.org/10.1073/pnas...
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Harris Wang @harriswang.bsky.social · 15/11/2025
📢 Our Dept. of Systems Biology at Columbia University has an open tenure-track Assistant Professor position in the broad area of quantitative biology. Come join our awesome department in NYC! Please circulate. apply.interfolio.com/177622 Suggested deadline: 12/15/2025. @columbiasysbio.bsky.social
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Mohammed AlQuraishi @moalquraishi.bsky.social · 28/10/2025
OpenFold3-preview (OF3p) is out: a sneak peek of our AF3-based structure prediction model. Our aim for OF3 is full AF3-parity for every modality. We now believe we have a clear path towards this goal and are releasing OF3p to enable building in the OF3 ecosystem. More👇
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Aziz Zafar @aziz-zafar.bsky.social · 13/05/2025
How can we better understand pathogenic variants in intrinsically disordered regions (IDRs)? How do models such as AlphaMissense and ESM1b predict pathogenicity, when these regions typically exhibit lower genomic conservation than ordered regions? Read more: doi.org/10.1101/2025...
doi.org
Molecular dynamics simulations of intrinsically disordered protein regions enable biophysical interpretation of variant effect predictors
Predictive models for missense variant pathogenicity offer little functional interpretation for intrinsically disordered regions, since they rely on conservation and coevolution across homologous sequ...
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Chao Hou @chaohou.bsky.social · 29/04/2025
Why do large protein language models like ESM2-15B underperform compared to medium-sized ones like ESM2-650M in predicting mutation effects? 🤔 We dive into this issue in our new preprint—bringing insights into model scaling on mutation effect prediction. 🧬📉
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Chao Hou @chaohou.bsky.social · 17/04/2025
We have updated our protein lanuage model trained on structure dynamics. Our new models show significant better zero-shot performance on mutation effects of designed and viral proteins compared to ESM2. check the new preprint here: www.biorxiv.org/content/10.1...
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Jeff Spence @jeffspence.github.io · 17/12/2024
Why do association studies prioritize trait-specific variants??? A quick thread about the importance of thinking about all traits at once 👇 1/6 (🧪🧬)
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Frank Noe @franknoe.bsky.social · 06/12/2024
Super excited to preprint our work on developing a Biomolecular Emulator (BioEmu): Scalable emulation of protein equilibrium ensembles with generative deep learning from @msftresearch.bsky.social ch AI for Science. www.biorxiv.org/content/10.1...
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Molly Przeworski @mollyprz.bsky.social · 05/12/2024
Most of the talks from our Oct meeting are now online, with a few more to come: www.precisionmedicine.columbia.edu/videos
precisionmedicine.columbia.edu
Video Library | Precision Medicine
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Molly Przeworski @mollyprz.bsky.social · 28/09/2024
The final program for the conference is now up: events.columbia.edu/cal/event/ev...
events.columbia.edu
Frontiers in Human Genetics Conference
<p>The Symposium will showcase transformative, fundamental research in Human Genetics for a broad audience of biologists and biomedical researchers. To this end, we bring together an interdisciplinary...
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Yufeng Shen @yshen.bsky.social · 05/12/2023
Open rank faculty search in the Program for Mathematical Genomics at Columbia University: www.nature.com/naturecareer...
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Jonathan Pritchard @jkpritch.bsky.social · 01/10/2023
I'm delighted to release the first half of my new textbook in human genetics: web.stanford.edu/group/pritch... "An Owner's Guide to the Human Genome: an introduction to human population genetics, variation and disease"
web.stanford.edu
An Owner's Guide to the Human Genome
An Owner's Guide to the Human Genome
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Elinor Karlsson @elinork.bsky.social · 13/09/2023
2nd Bluesky post … faculty search! Genomics and Comp Bio dept @ UMass Chan Med School academicjobsonline.org/ajo/jobs/25641 pop genomics, imaging, stat. genetics, machine learning aka cool science w big data. Collab & supportive environment where you can innovate & make discoveries. Join us!
academicjobsonline.org
University of Massachusetts Chan Medical School, Program in Bioinformatics and Integrative Biology
Full service online faculty recruitment and application management system for academic institutions worldwide. We offer unique solutions tailored for academic communities.
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