iiinova — where your digital self keeps evolving

Joshua Mitchell 🦠

@thepatientwait.bsky.social

Reposted by Joshua Mitchell 🦠

Ben J Woodcroft @benjwoodcroft.bsky.social · 20/05/2026

SingleM 0.21 is go - @ace-gtdb.bsky.social R232 reference database, less verbose logging, fixes, etc. Thanks @thepatientwait.bsky.social @aroneys.bsky.social @rossenzhao.bsky.social and on GitHun @EisenRa @magicprotoss @MCeciC

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Reposted by Joshua Mitchell 🦠

Ben J Woodcroft @benjwoodcroft.bsky.social · 16/07/2025

Out in @natbiotech.nature.com: Metagenome taxonomy profilers usually ignore unknown species. SingleM is an accurate profiler which doesn't, even detecting phyla with no MAGs. Profiles of 700,000 metagenomes at sandpiper.qut.edu.au. A 🧵

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Reposted by Joshua Mitchell 🦠

Ben J Woodcroft @benjwoodcroft.bsky.social · 17/04/2025

A 1.0 release for Sandpiper. 700,000 microbial community profiles (3x the last version, 4.7 Pbp metaG), searchable via the @ace-gtdb.bsky.social R226 taxonomy that just dropped. MetaGs are going exponential, but we are still nowhere near a MAG for all species. sandpiper.qut.edu.au #microsky 🧬🖥️ 1/2

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