Sign in

Rossen Zhao

@rossenzhao.bsky.social
12 followers 7 following 1 posts

PhD Candidate at Centre for Microbiome Research - QUT Australia

PostsRepliesMedia
Reposted by Rossen Zhao
Ben J Woodcroft @benjwoodcroft.bsky.social · 16/07/2025
Out in @natbiotech.nature.com: Metagenome taxonomy profilers usually ignore unknown species. SingleM is an accurate profiler which doesn't, even detecting phyla with no MAGs. Profiles of 700,000 metagenomes at sandpiper.qut.edu.au. A 🧵
Logo for the Sandpiper website
713471
Rossen Zhao @rossenzhao.bsky.social · 16/05/2025
First code release of "SingleM for dsDNA phage"! Lyrebird scans metagenomic reads for marker genes to give a “phage community profile”. It detects many novel phages, many more than standard contig-centric methods. @benjwoodcroft.bsky.social @emerge-bii.bsky.social wwood.github.io/singlem/Lyrebird
wwood.github.io
Lyrebird (phage profiling)
Documentation for SingleM
0128