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Théo Dupuis

@theodyssee.bsky.social
55 followers 183 following 0 posts

Scientist @Genomics. Lurking around here when my feed on mastodon feels too overwhelming

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Reposted by Théo Dupuis
Ana Viñuela @anavinuela.bsky.social · 08/09/2026
Please share! Fully funded PhD position (UK home fees) at U. of Dundee for someone interested in combining wet-lab (Dr Murdoch) and computational approaches (🙋‍♀️ 2nd supervisor), with plenty of scope for learning new skills across both areas. 🧪🧬 Deadline 21 September
findaphd.com
Redox Control of RNA Splicing in Cardiovascular Disease at University of Dundee on FindAPhD.com
PhD Project - Redox Control of RNA Splicing in Cardiovascular Disease at University of Dundee, listed on FindAPhD.com
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Reposted by Théo Dupuis
Will Macnair @willmacnair.bsky.social · 13/03/2026
New preprint! Our workflow for processing single cell and nuclei data, called 🎉 scprocess 🎉 We have been working on it for ~18 months now, over which time we have processed at least 2k samples with it, so it has had a decent amount of testing.
Cute logo for the package scprocess, showing a cartoon of 3 cells being unpacked from a box labelled with a barcode, and loaded onto a conveyor belt. The colour scheme is purple, dark blue and mustard.
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Colette Delawalla, PhD @cdelawalla.bsky.social · 05/06/2026
Members of the American Diabetes Association (ADA) were removed by police during the organization's annual meeting on Friday as they handed out copies of an editorial criticizing Trump administration changes to U.S. biomedical research. www.medpagetoday.com/special-repo...
medpagetoday.com
Video: Police Tussle With Diabetes Experts at ADA Meeting
Researchers told they could no longer attend the annual scientific sessions
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Haky Im @hakyim.bsky.social · 26/03/2026
We're Hiring! Computational Biologist / Genomic Data Scientist. Join our lab to use cutting-edge data & AI/ML to advance human health. - Genetics & Genomics analysis - AI/ML in biology - Solving real-world genomic problems 📄 Full details: docs.google.com/document/d/1...
docs.google.com
Job-computational-biologist-2025.docx
Genomic Data Scientist / Computational Biologist We are looking to hire a lifelong learner interested in developing statistical and computational tools to sift through large amounts of data to make di...
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Luisa F. Pallares @luisapallares.bsky.social · 23/02/2026
Have you ever wondered 🤔... Does phenotypic variance respond to environmental perturbation? Does it have a genetic basis? Are mean and variance regulating loci exposed to different selection pressures? These and more questions are explored in our new preprint 🔥 www.biorxiv.org/content/10.6...
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Vincent Pascat @vpascat-biostat.bsky.social · 18/02/2026
🚨 Proud to share that our paper on the genetic links between type 2 diabetes (T2D) and hypertension is now published in @natcomms.nature.com! We dissect the genetic relationship between T2D and hypertension and show it is not driven by a single shared pathway. 🧬 (1/N)
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Robert Warmerdam @robertwarmerdam.bsky.social · 06/02/2026
🧬 New preprint alert! After years of collaborative work across 52 datasets we are presenting eQTLGen phase 2: a genome-wide eQTL meta-analysis covering 43,301 blood samples: www.medrxiv.org/content/10.6... (1/8)
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Vincent Pascat @vpascat-biostat.bsky.social · 06/02/2026
Polygenic scores are useful for early detection, but also early prevention! New paper shows people with high genetic risk of T2D have 3x more risk of developing it by age 35. Early detection could trigger lifestyle changes, metformin prescription... doi.org/10.1038/s414...
doi.org
Preventing premature deaths through polygenic risk scores - Nature Communications
Via an integrative modelling approach that combines population and clinical trial data, the authors find that polygenic risk score-based screening would reduce premature mortality across seven commonl...
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Moneeza Siddiqui @moneeza-ks.bsky.social · 26/09/2025
Developing type 2 diabetes young+lean is not as uncommon as it may seem. This phenomenon is more common in people of South Asian and East Asian ancestry, but is observed across populations. Why does this happen, how should we screen and treat young+lean T2D. 👉 Read our paper here: rdcu.be/eH0YR
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Haky Im @hakyim.bsky.social · 12/09/2025
I'm hiring a computational biologist interested in complex trait genetics using deep learning approaches. Reach out to me, if interested.
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Vilain Syndicaliste @vilainsyndicaliste.bsky.social · 05/05/2025
"L’Etat veut bien accueillir les chercheuses et chercheurs empêchés de travailler aux Etats-Unis, mais pas tous. Les thématiques considérées comme «wokes» ne font pas partie des cibles du gouvernement." Macron est une belle ordure.
Études sur le genre ou les minorités : les scientifiques que la France ne veut pas sauver du trumpisme
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Sasha Gusev @sashagusevposts.bsky.social · 28/03/2025
I wrote about how population stratification in genetic analyses led to a decade of false findings and almost certainly continues to bias emerging results. But we are starting to have statistical tools to sniff it out. A 🧵:
open.substack.com
How population stratification led to a decade of sensationally false genetic findings
Stratification makes environments look like genes
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Ana Viñuela @anavinuela.bsky.social · 11/03/2025
Last week to apply for this PhD position my group. 4 years funded position to study genetic and environmental causes of complex human diseases. A fantastic training opportunity for a candidate interested in acquiring skills in data science and clinical data analysis.
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Ana Viñuela @anavinuela.bsky.social · 17/02/2025
We have an open position to do a #PhD in genomics at the University of Dundee (UK). This is a 4 years fully funded position in collaboration with pharma industry in USA. Unfortunately, only for UK citizens or pre- and settle status residents. Please share! shorturl.at/RwaCr
findaphd.com
Interaction of genetic and environmental drivers of metabolic and autoimmune disease at University of Dundee on FindAPhD.com
PhD Project - Interaction of genetic and environmental drivers of metabolic and autoimmune disease at University of Dundee, listed on FindAPhD.com
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Our World in Data @ourworldindata.org · 21/01/2025
Since 2010, the training computation of notable AI systems has doubled every six months
A chart showing the computation used to train notable AI systems, measured in total floating-point operations (FLOP) and highlighting two distinct eras. In the first era from 1950 to 2010, the training computation doubled approximately every 21 months. With the rise of deep learning since 2010, it has been doubling approximately every 6 months. The y-axis ranges from 100 FLOP to 100 septillion FLOP. Several systems are highlighted, from early systems such as Theseus and the Perceptron Mark 1 to recent systems such as GPT-4 and Gemini 1.0 Ultra.
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Moneeza Siddiqui @moneeza-ks.bsky.social · 26/11/2024
Genes&Health, @samcbhodgson.bsky.social @sarahfiner.bsky.social & I are very pleased to share the 1st study using partitioned polygenic scores to understand age of T2D onset, GDM, lean T2D &💊response. All this in a south Asian cohort –typically under-represented in 🧬 research @qmul.bsky.social
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