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Stefano Mangiola @stemang.bsky.social · 03/09/2026

Great news! @saigenci.bsky.social, through its Computational System Oncology Program, is a main supporter of #BiocAsia2026! With their support, we will be able to provide travel scholarships; news soon! @bioconductor.bsky.social @abacbs.bsky.social

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Stefano Mangiola @stemang.bsky.social · 24/04/2026

#cellNexus is out! -> "Quality control, annotation, aggregation and analytical layers for the Human Cell Atlas data" - QC layers - Consensus cell annotation layers - Pseudobulk aggregation of the whole human atlas - R/Python APIs cellNexus.org Preprint: www.biorxiv.org/content/10.6...

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Stefano Mangiola @stemang.bsky.social · 18/12/2025

A great last #tidyomics meeting of the year, looking forward to more of these in 2026! @bioconductor.bsky.social

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Stefano Mangiola @stemang.bsky.social · 27/11/2025

Well done, William Hutchison! For an amazing talk about prostate cancer tumour microenvironment at #ABACBS2025 Also, well done on a great workshop on #tidyomics and his #tidySpatialExperiment @bioconductor.bsky.social

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Stefano Mangiola @stemang.bsky.social · 27/11/2025

The Euro Bioc 2026 in Turku is official!

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Stefano Mangiola @stemang.bsky.social · 27/11/2025

The first conference for our Lab! Amazing environment at #ABACBS2025! 🙏 Congrats, Mengyuan, Chen and Galen, for the great posters, and Haroon for being a finalist with his talk on the democratisation of foundational models. 🚀

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Stefano Mangiola @stemang.bsky.social · 14/10/2025

ABACBS/BioC Asia 2025 Workshops are coming! @ Adelaide 27-28 November. Join us in November for two days of deep-dive sessions on scalable bioinformatics, spatial omics, AI-driven genomics, and more blackochrelabs.au/abacbs2025_w... #Bioinformatics @abacbs.bsky.social @bioconductor.bsky.social

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Stefano Mangiola @stemang.bsky.social · 06/08/2025

Join #AI and #Immunology! 📢 Fully funded #PhD @saigenci.bsky.social: develop AI to chart immune diversity across the population, in #cancer. CV, transcript, and a one-page statement by 30 August 2025 → www.linkedin.com/feed/update/... #PhDOpportunity #MachineLearning #SingleCell

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Stefano Mangiola @stemang.bsky.social · 30/07/2025

Two days to apply for a BiocAsia workshop! - Did you develop a package you want to showcase? - You want to share an analysis workflow for your favourite data type? This is your time to share this with the community! Submission -> biocasia2025.bioconductor.org @bioconductor.bsky.social

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Stefano Mangiola @stemang.bsky.social · 23/05/2025

Today, I had a blast at the @mig-unimelb.bsky.social MIG symposium, showcasing our use of mixed linear models at scale and #AI tools to study #singlecell cancer immunology. Thanks Heejung, Kim-Anh and all the MIG! events.unimelb.edu.au/MIG/event/45...

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Stefano Mangiola @stemang.bsky.social · 17/03/2025

Great first #tidyomics meeting, covering 3 continents! 🌍 We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more! Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ... @bioconductor.bsky.social

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Stefano Mangiola @stemang.bsky.social · 11/02/2025

📢 An exciting #Postdoc position opened in our laboratory for a junior #Bioinformatician! Developing #Bioinformatic and #AI tools to advance precision oncology using the available #singlecell / #spatial data universe. careers.adelaide.edu.au/cw/en/job/51... Pls share! 🙏 #postdocposition

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Stefano Mangiola @stemang.bsky.social · 22/01/2025

We (Chen Zhan!) just launched #sccomp for #Python! Testing for differences in cell-type proportion in #singlecell #spatial data? #sccomp is a mixed-effect Bayesian model - Use sum-constrained BetaBinomial distribution - Outliers detect. - Remove unwanted effects github.com/MangiolaLabo...

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Stefano Mangiola @stemang.bsky.social · 15/11/2024

📢💻🧪 2 #PhD #Scholarships available @SAiGENCI: 1) Hybrid wet-dry: #multiomics to predict neoadjuvant response in #cancer 2) #Bioinformatics, comp-bio: large-scale #singlecell modelling and infrastructure 🔗https://researchers.adelaide.edu.au/profile/stefano.mangiola#my-research Please share! 🙏

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Stefano Mangiola @stemang.bsky.social · 11/11/2024

Amazing #BiocAsia2024 event! Thanks to all who participated! Looking forward to next year! @bioconductor.bsky.social

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Stefano Mangiola @stemang.bsky.social · 21/08/2024

Hello Community! Don't miss the #tidyomics meeting in one week! All welcome! plz share 🙏 We'll present #HPCell, a pipe-to-HPC 📦 for popular single-cell and spatial tools. + we'll discuss ecosystem and community! 8.30AM (New York) 1.30PM (London) 10.30PM (Sydney)

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Stefano Mangiola @stemang.bsky.social · 05/08/2024

Great 2nd #tidyomics meeting! Next week @carroll_jono presents #DFplyr, and we'll chat community and ecosystem! This will be US, AU friendly (we will rotate) - 9AM Sydney (wed) - 4PM San Franc. US (tue) - 7PM NY (tue) unimelb.zoom.us/j/8833403951... Pswrd:542990 @mikelove.bsky.social

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Stefano Mangiola @stemang.bsky.social · 17/07/2024

🧹🧬💻Exciting first #tidyomics @bioconductor meeting! We talked about community, development plans, and things to improve. Join us for the next one in two weeks. Details soon!

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Stefano Mangiola @stemang.bsky.social · 02/07/2024

Join us Tuesday 16th of JULY for a #tidyomics Zoom celebration and open discussion about #future plans! 8.30AM US time (New York, EDT) 1.30PM Europe time (London, BST) 10.30PM Australia time (Sydney, AEST) Zoom: unimelb.zoom.us/j/8833403951... Password: 542990 #everyone welcome!

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Stefano Mangiola @stemang.bsky.social · 18/06/2024

To celebrate 🥳 and discuss future plans of #tidyomics, we are organizing a #Zoom party/getting-together! This is #open to everyone, so please join us and let's walk together! When would you prefer? Please reply to the #poll below for the best time zone.

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Stefano Mangiola @stemang.bsky.social · 13/06/2024

I will be at the #ECCB2024 this September. If someone wants to join me in teaching/helping with the #tidyomics #workshop please let me know! eccb2024.fi/workshops-tu... Together is more fun! :) #Bioconductor #ECCB2024 #SAiGENCI #WEHI_research

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Stefano Mangiola @stemang.bsky.social · 29/04/2024

🌎👵⚤ Excited to share -> Multi-organ map of the human immune system across age, sex and ethnicity From 29M cells and 12K samples from @humancellatlas , tissue-specific #Ageing programs, sexual #dimorphism, #Ethnical diversity in #Immunotherapy targets biorxiv.org/content/10.1...

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