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shysol4u.bsky.social

@shysol4u.bsky.social
92 followers 137 following 2 posts

Assistant Professor, Functional Genomics, plant-microbe-soil interaction. ....

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Helen Brabham @helenbrabs.bsky.social · 29/09/2025
Super excited to see our work on the NLRseek program finally published 🥳 Here we identify new NLRs against major wheat pathogens and present a pipeline for NLR identification. Huge thank you to all of the co-authors for bringing this work together! @matthewmoscou.bsky.social rdcu.be/eIGvv
rdcu.be
Discovery of functional NLRs using expression level, high-throughput transformation and large-scale phenotyping
Nature Plants - Rapid discovery of functional resistance genes is enabled by a high-expression signature and high-throughput transformation. This approach identified 31 new resistance genes for...
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Ksenia Krasileva @kseniakrasileva.bsky.social · 17/09/2025
New: ‘Kronos’ #wheat genome preprint • PacBio+Hi-C; 99.9% BUSCO • 2.3k curated NLR loci (1,089 high conf) • 3k EMS datasets re-mapped; 📈 new mutations • Curated smallRNA atlas 🔗 www.biorxiv.org/content/10.1... zenodo.org/records/1021... #genomics #openscience team effort led by Dr Kyungyong Seong 💫
biorxiv.org
The Annotated Blueprint: Integrated Functional Genomic Resources for a Model Tetraploid Wheat Triticum turgidum cv. Kronos
Triticum turgidum cv. Kronos is a tetraploid wheat cultivar that underpins one of the richest community platforms for functional genomics. Over the past decade, about 3,000 exome- and promoter-capture...
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Tatsuya Nobori @tatsuyanobori.bsky.social · 21/07/2025
Exciting opportunities to establish your group at JIC! Come join our vibrant research community in Norwich! 🔹 Independent Fellowship in Plant-Associated Microbial Interactions (path to tenure-track) tinyurl.com/yk576jms 🔹 GL in Discovery Plant Sciences (tenure-track or tenured) tinyurl.com/mwbs4dhn
jic.ac.uk
Independent Fellowship in Plant-Associated Microbial Interactions | John Innes Centre
An exciting opportunity for an Independent Fellowship in Plant-Associated Microbial Interactions has arisen at the John Innes Centre. To read the full job description for this role…
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Boas Pucker @bpucker.bsky.social · 02/05/2025
Wrapping up our #Python course with inspiring student project presentations! 🚀 Topics range from bioinformatics to big data. 📂 Materials on GitHub: github.com/bpucker/PyBo #coding #OpenEducation #genomics @puckerlab.bsky.social
Illustration of four diverse students presenting their final Python course projects in a classroom. A projector screen behind them displays the course title 'PYTHON COURSE' with four project topics: 'Extraction of Genomic Features', 'Development of Molecular Markers from Sequence Variants', 'Analysis of Large Citation Data Sets', and 'Cleaning of FASTA Files'. Two audience members are visible from behind, listening attentively. The students are holding laptops or notes and appear confident and engaged.
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Boas Pucker @bpucker.bsky.social · 21/05/2025
Excited to share the publication of MGSE, our new approach to genome size estimation, in BMC Genomics: Mapping-based genome size estimation doi.org/10.1186/s128... #Genomics #Bioinformatics @puckerlab.bsky.social
Concept of MGSE for the estimation of a genome size based on a read mapping. See https://doi.org/10.1186/s12864-025-11640-8 for details
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Nature Reviews Genetics @natrevgenet.nature.com · 13/05/2025
New online! Predicting gene expression from DNA sequence using deep learning models
nature.com
Predicting gene expression from DNA sequence using deep learning models
Nature Reviews Genetics, Published online: 13 May 2025; doi:10.1038/s41576-025-00841-2Barbadilla-Martínez et al. review recent progress in deep-learning-based sequence-to-expression models, which predict gene expression levels solely from DNA sequence. These models are providing new insights into the complex combinatorial logic underlying cis-regulatory control of gene expression.
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Gazala Ameen @plantpath.bsky.social · 15/04/2025
Day 3 at BLS meeting @umnplantpath.bsky.social. Proud of my PhD students Muhammad Ahmad and @tapishpwr.bsky.social whose talks on BLS host resistance in wheat were outstanding! Proud mentors Karl Glover, @shysol4u.bsky.social. @sdstate.bsky.social. Moment with a fellow Plant Pathologist- Borlaug!
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shysol4u.bsky.social @shysol4u.bsky.social · 15/04/2025
Last week we @plantpath.bsky.social, Mural lab, & Toporek lab celebrated graduate student appreciation week bringing togather plant protection and genomics groups at @sdstate.bsky.social A loud shoutout to Sachin, Israel, Riya, and Nikhil. Awesome combination of Food,Fun,Gifts & Graduates.
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 15/02/2025
To US colleagues who have lost or are in imminent danger of losing their jobs: please DM whether we can accommodate your research.
German and US flags
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Katie Mack @astrokatie.com · 28/01/2025
I think some people hear “grants” and think that without them, scientists and government workers just have less stuff to play with at work. But grants fund salaries for students, academics, researchers, and people who work in all areas of public service. “Pausing” grants means people don’t eat.
washingtonpost.com
White House pauses all federal grants, sparking confusion
The Trump administration has put a hold on all federal financial grants and loans, affecting tens of billions of dollars in payments.
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shysol4u.bsky.social @shysol4u.bsky.social · 26/01/2025
Fun time in lab: Keyence BZ-X800 demo by Conor. I guess everyone likes it!
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geneticliteracy.bsky.social @geneticliteracy.bsky.social · 26/01/2025
‘All major national academies of sciences say that genetically modified crops are as safe as traditional crops.’ Still, regulations have curbed GMO adoption, limiting gains for farmers.
buff.ly
Viewpoint: Crop biotechnology is China’s next leap forward in ‘smart agriculture’
Between 1990 and 2009, China's agricultural labor decreased by 5 percent while agricultural productivity increased by 6.5 percent a year. However,
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