iiinova — where your digital self keeps evolving

Shingo Miyauchi @shingomiyauchi.bsky.social · 23/09/2026

Refreshing to see a clean fungal comparative genomics paper from a Japanese group! Plus, a welcome move beyond the usual focus on Aspergillus. ORM fungi are still understudied. Our large-scale ORM fungal genomics paper will be out in the next couple of months! 😃

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Shingo Miyauchi @shingomiyauchi.bsky.social · 17/09/2026

Thank you! My goal is to transform dry science articles into colorful picture books so everyone can enjoy them.😆

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Shingo Miyauchi @shingomiyauchi.bsky.social · 16/09/2026

How do symbiotic fungi fight off rival microbes? 🍄 We showed how the ericoid mycorrhizal fungus, Oidiodendron maius uses unknown metabolites to suppress pathogenic and saprotrophic fungi. 🫱Our paper: shorturl.at/W7Phw

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Shingo Miyauchi @shingomiyauchi.bsky.social · 16/08/2026

Hi Bevan, a PhD student I supervise is at the conference. His name is 'Wahei Hagiwara' giving a talk on 'Genomics of Termitomycetes'. He works on fungal genomics at the Okinawa Institute of Science and Technology. He might come by to say hello. If you see him, please give him a warm welcome!😀

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Shingo Miyauchi @shingomiyauchi.bsky.social · 22/04/2026

Healthy soil is the foundation of a thriving ecosystem - Protecting the underground protects our future. 🌱🍄🍄‍🟫 #UnderEarthDay #Fungi @spun.earth

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Shingo Miyauchi @shingomiyauchi.bsky.social · 31/03/2026

❄️Visual Omics Series 15❄️ Out now! Comparative genomics of 129 plant-associated fungi focusing on Antarctic endophytes. Visuals styled after Edward Wilson's Terra Nova Expedition. @fmartin54.bsky.social @mycocoroom.bsky.social @oistedu.bsky.social 👉 shorturl.at/5IM8A 🧪🧬🖥️ #Genomics #Fungi #DataViz 🍄

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Shingo Miyauchi @shingomiyauchi.bsky.social · 12/02/2026

🟢Visual Omics Series 14🟢 Do the same fungal species behave similarly across distant locations regardless of environment? We examined through multi-omics analysis. Colour theme inspired by Claude Monet's Water Lilies. @jgi.doe.gov @oistedu.bsky.social 🔗https://shorturl.at/fp5j9 #fungi #genomics 🍄

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Shingo Miyauchi @shingomiyauchi.bsky.social · 04/02/2026

Our preprint on Agaricales comparative genomics is out! 🍄 122 genomes reveal how grassland fungi evolved diverse strategies: Ectomycorrhizal species lost plant-degrading enzymes while saprotrophs expanded them. 👉https://shorturl.at/shWPp @fmartin54.bsky.social #Fungi #Genomics #SoilEcology

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Mark A. Anthony @anthomycota.bsky.social · 08/09/2025

A fun commentary with @christinakaiser.bsky.social inspired by a very cool paper in New Phyt by @fungidownunder.bsky.social et al. showing that EcM fungal functional traits affect soil C responses to elevated CO2. EcM species and traits really matter! nph.onlinelibrary.wiley.com/doi/10.1111/...

nph.onlinelibrary.wiley.com

The role of ectomycorrhizal functional diversity in mediating soil carbon cycling under global change

Click on the article title to read more.

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Shingo Miyauchi @shingomiyauchi.bsky.social · 14/10/2025

🌟Call for Papers: Genomics of Symbiosis🌟 I am a guest editor for BMC Genomics. Looking forward to your exciting manuscripts on all types of symbiosis on earth including symbiotic fungi and their hosts! 🌿🍄 biomedcentral.com/collections/... #BMCgenomics

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Francis M. Martin @fmartin54.bsky.social · 29/08/2025

Looking forward to visiting Zhejiang University …

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Francis M. Martin @fmartin54.bsky.social · 29/08/2025

My Chinese colleagues are keeping me busy 😉

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Shingo Miyauchi @shingomiyauchi.bsky.social · 06/08/2025

🔶Visual Omics Series 13🔶 Out Now #CurrentBiology Decipher the unique genomes of morels, truffles, and their toxic kin, styled with Gustav Klimt's artistry. @fmartin54.bsky.social @oistedu.bsky.social @mycocosm.bsky.social 👉 shorturl.at/CSZDP 🧪🧬🖥️ #Genomics #Fungi #DataViz

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Francis M. Martin @fmartin54.bsky.social · 05/08/2025

Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae published in @currentbiology.bsky.social 1/n Photo: M. Vulgaris (Ph Clowez)

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Francis M. Martin @fmartin54.bsky.social · 01/08/2025

Un beau livre qui dévoile la vie intime d’essences incontournables de nos régions : Chêne, tilleul, sapin, mélèze, frêne, saule… des portraits personnels illustrant combien chaque arbre est un monde à part entière. Superbement illustré par Emmanuelle Boîtier … boutique.salamandre.org/arbres-secre...

boutique.salamandre.org

Arbres, secrets de géants - Prévente > Boutique - Salamandre > Boutique - Salamandre

Le livre Un beau livre très soigné qui dévoile la vie intime de vingt-quatre essences incontournables de nos régions. Chê

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Australasian Mycological Society @ausmycsoc.bsky.social · 26/03/2025

Interested in improving soil biodiversity and promote sustainable forestry? Think about applying for a PhD to work with @fungidownunder.bsky.social and @westsyduhie.bsky.social industrial partner Rhizocore, seeking to improve mycorrhizal diversity in plantation forestry tinyurl.com/jxcdhp3p

tinyurl.com

Characterising metabolite-driven structuring of healthy soil microbiomes by mycorrhizal fungi | Western Sydney University

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Tonni Andersen @tonnigrubeandersen.bsky.social · 21/03/2025

Finally! Im so excited to present to culmination of many years of work from the fantastic Defeng Shen and some great collaborators. For details, I have made a digested thread below, but if you are more interested feel free to reach out (and read the paper of course). www.science.org/doi/10.1126/...

science.org

Apoplastic barriers are essential for nodule formation and nitrogen fixation in Lotus japonicus

Establishment of the apoplastic root barrier known as the Casparian strip occurs early in root development. In legumes, this area overlaps with nitrogen-fixing nodule formation, which raises the possi...

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Shingo Miyauchi @shingomiyauchi.bsky.social · 08/03/2025

🌟Call for Papers: Genomics of Symbiosis in BMC Genomics🌟 Looking forward to your exciting manuscripts on all types of symbiosis on earth including symbiotic fungi and their hosts! 🌿🍄 biomedcentral.com/collections/... #BMCGenomics @biomedcentral.bsky.social 🧪🧬🖥️

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Society for the Protection of Underground Networks (SPUN) @spun.earth · 26/02/2025

Learn about our new research uncovering #fungi and plant trade systems, and hear from 3 of the authors. Watch the video: youtu.be/tOUhu2tXIWg?...

youtu.be

Exploring “A travelling-wave strategy for plant–fungal trade”

YouTube video by SPUN

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Society for the Protection of Underground Networks (SPUN) @spun.earth · 26/02/2025

Our newest research on plant-fungal trade published today in @nature.com. The work, led by scientists from Vrije Universiteit, Princeton University, SPUN & AMOLF combines robotics, mycology & biophysics to reveal underground supply-chain dynamics. Open access: www.nature.com/articles/s41...

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Francis M. Martin @fmartin54.bsky.social · 22/02/2025

An exciting exploration of morel mitogenomes with Tao Gang, Shingo and the JGI team!

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Shingo Miyauchi @shingomiyauchi.bsky.social · 22/02/2025

🟢Visual Omics Series 12🟢 Out now! Explore the mitochondrial genomes of fascinating Morchella species through a retro 80s video game vibe. @fmartin54.bsky.social @imafungus.pensoft.net #Genomics #Fungi #DataViz 👉https://shorturl.at/KPqyH 🧪🧬🖥️

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Shingo Miyauchi @shingomiyauchi.bsky.social · 12/02/2025

Is it possible for me to join the group?

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Francis M. Martin @fmartin54.bsky.social · 05/02/2025

Thrilled to see our paper "Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota)" released online. An amazing collaboration with Alden Dirks, Tim James and many others ... www.sciencedirect.com/science/arti...

sciencedirect.com

Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota)

Lorchels, also known as false morels (Gyromitra sensu lato), are iconic due to their brain-shaped mushrooms and production of gyromitrin, a deadly myc…

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Shingo Miyauchi @shingomiyauchi.bsky.social · 02/02/2025

Is it possible for me to be included?🙏

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Shingo Miyauchi @shingomiyauchi.bsky.social · 25/12/2024

🟡 Visual Omics Series 11 🟡 Published now! Discover genomic signatures in ectomycorrhizal fungi through a comparative analysis of 63 ECM fungi, uniquely illustrated with Andy Warhol-inspired art. 🧬🖥️ @fmartin54.bsky.social #Evolution #Genomics #Fungi #DataViz 👉 shorturl.at/xqUBK

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Francis M. Martin @fmartin54.bsky.social · 24/12/2024

A great collection of papers and a superbe illustration of the mycorrhizal networks from Florian Gadenne on the cover page 👍

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Shingo Miyauchi @shingomiyauchi.bsky.social · 17/12/2024

Thank you very much for the reply. I found it a bit ambiguous, but I'm looking forward to reviewing your manuscript. 😀

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Chenxin Li, PhD @chenxinli2.bsky.social · 14/12/2024

In addition to applied statistics, I have another repository on #DataVisualization: "quick data vis" (github.com/cxli233/Quic...). It used to be under "Online_R_learning" but now it has its own repository on GitHub. I have used this content to teach 1st year grad students for 3 years.

Table of content for "quick data vis": basics of R coding, tidy data frames, ggplot, mean separation, proportional data, heatmaps, relationship data, plot assembly.

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Shingo Miyauchi @shingomiyauchi.bsky.social · 04/12/2024

✨Visual Fungal Omics✨Check out my recent papers! I emphasize visual presentation of data to make biological interpretation easy and appealing for non-experts. 🍄 I transform data into stunning visuals, showcasing the beauty of fungal genomes. #bioinformatics #dataviz #genomics #evolution #fungi

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Shingo Miyauchi @shingomiyauchi.bsky.social · 18/11/2024

🌟Call for Papers: Genomics of Symbiosis🌟 Thrilled to be a guest editor for BMC Genomics. Looking forward to your exciting manuscripts on all types of symbiosis on earth including symbiotic fungi and their hosts! 🌿🍄 biomedcentral.com/collections/...

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