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Jan Schejbal

@schejbaljlab.bsky.social
592 followers 559 following 95 posts

Perpetual student of bioanalytical sciences, life and everything. #teamMassSpec and #proteomics Ideas expressed here are solely mine. A girl dad 👨‍👩‍👧‍👧 born and raised in 🇨🇿, living in New England 🇺🇲

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Jan Schejbal @schejbaljlab.bsky.social · 06/05/2025
EU just pledged €0.5B in research funding to attract and retain talent👇 The initiative is called 'Choose Europe for Science'
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US HUPO @us-hupo.org · 26/02/2025
Thank you for joining us at US HUPO 2025 in Philadelphia! We will see you in St. Louis for US HUPO 2026! #Proteomics #USHUPO2025 #USHUPOConference 🧪
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Jan Schejbal @schejbaljlab.bsky.social · 23/02/2025
How good or bad idea is it to take one week vacation and be dropped the evening before #USHUPO2025 starts (and you lead morning short course 🚀)? Guess we will find out tomorrow. Ping me here or on LinkedIn if you want to chat. I am happy to find time! #Proteomics
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BioMassSpec @realbiomassspec.bsky.social · 30/01/2025
Communicating with Stakeholders to Identify High-Impact Research Directions for Non-Targeted Analysis #AC #MassSpec pubs.acs.org/doi/10.1021/...
pubs.acs.org
Communicating with Stakeholders to Identify High-Impact Research Directions for Non-Targeted Analysis
Non-targeted analysis (NTA) using high-resolution mass spectrometry without defined chemical targets has the potential to expand and improve chemical monitoring in many fields. Despite rapid advancements within the research community, NTA methods and data remain underutilized by many potential beneficiaries. To better understand barriers toward widespread adoption, the Best Practices for Non-Targeted Analysis (BP4NTA) working group conducted focus group meetings and follow-up surveys with scientists (n = 61) from various sectors (e.g., drinking water utilities, epidemiologists, n = 9) where NTA is expected to provide future value. Meeting participants included producers and end-users of NTA data with a wide range of familiarity with NTA methods and outputs. Discussions focused on identifying specific barriers that limit adoption and on setting NTA product development priorities. Stated priorities fell into four major categories: 1) education and training materials; 2) QA/QC frameworks and study design guidance; 3) accessible compound databases and libraries; and 4) NTA data linkages with chemical fate and toxicity information. Based on participant feedback, this manuscript proposes research directions, such as standardization of training materials, that BP4NTA and other institutions can pursue to expand NTA use in various application scenarios and decision contexts.
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Jan Schejbal @schejbaljlab.bsky.social · 15/01/2025
🤔 Ever wondered how proteomics thrives in (bio)pharma🚀? How you could provide impact in industry with proteomics background earned in academia? Please join me and @drawheatcraft.bsky.social for Sunday morning US HUPO 2025 short course 👇
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Jan Schejbal @schejbaljlab.bsky.social · 15/01/2025
🤔 Ever wondered how proteomics thrives in (bio)pharma🚀? How you could provide impact in industry with proteomics background earned in academia? Please join me and @drawheatcraft.bsky.social for Sunday morning US HUPO 2025 short course 👇
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PastelBio @pastelbio.bsky.social · 13/01/2025
A Technical Evaluation of Plasma Proteomics Technologies www.biorxiv.org/cont... --- #proteomics #prot-preprint
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Olga Vitek @olgavitek.bsky.social · 12/01/2025
May Institute on Computation and Statistics for Mass Spectrometry and Proteomics @KhouryCollege @Northeastern in Boston MA is happening in person on April 28-May 11, 2025 and is accepting applications! You will not regret attending computationalproteomics.khoury.northeastern.edu
computationalproteomics.khoury.northeastern.edu
May Institute – Computation and statistics for mass spectrometry and proteomics
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Emma Doud @fireinlab.bsky.social · 12/01/2025
The May Institute is a fantastic learning experience and available virtually and in person! #teammassspec #proteomics computationalproteomics.khoury.northeastern.edu
computationalproteomics.khoury.northeastern.edu
May Institute – Computation and statistics for mass spectrometry and proteomics
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Jan Schejbal @schejbaljlab.bsky.social · 04/01/2025
How come this beautiful preprint didn't get much traction in here🤔? We will definitely want to give MAETi a try! Anyone else is planning to try this out? Any words of wisdom from team #proteomics?
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ProteomicsNews (Ben Orsburn) @proteomicsnews.bsky.social · 29/12/2024
Do you have a favorite proteomic paper of 2024? I narrowed my list down to 20-ish. (It's pretty clear what Nature had a favorite) proteomicsnews.blogspot.com/2024/12/my-f...
proteomicsnews.blogspot.com
My favorite proteomics papers of 2024!
It's been...a...year....for sure.  And for proteomics, this is EASILY the biggest year ever. Mine kicked off with the honor of being invit...
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Jan Schejbal @schejbaljlab.bsky.social · 28/12/2024
I am a proteomicist 🧑‍🔬 nice to meet you 👋 #teammassspec #proteomics youtu.be/b3ImaM7v2OY?...
youtu.be
Proteomics in 2 Minutes
YouTube video by 2 Minute Expert
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US HUPO @us-hupo.org · 18/12/2024
We’re thrilled to present "We Are the Analyzers" – an anthem for the proteomics community! A huge shoutout to everyone who brought this incredible song to life. Look what proteomics has already shown us 🎶🧪youtu.be/wzmJDNmsWK8 #Proteomics #USHUPO20YRS
youtu.be
We Are the Analyzers - Proteomics Anthem
We Are the Analyzers - A Proteomics Anthem by US HUPO.
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Ben Neely @benneely.com · 06/12/2024
The next season of #THEProteomicsShow has started! For The Philly Express, @proteomicsnews.bsky.social and I will feature speakers at #USHUPO2024 (weekly, hopefully). This first episode was the agenda, cause it was a bad idea the last two times. Enjoy!
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ProteomicsNews (Ben Orsburn) @proteomicsnews.bsky.social · 06/12/2024
Spatial proteomics is Nature's Method of the Year for 2024!! Congrats to the great people in our field featured in this virtual issue! www.nature.com/articles/s41...
nature.com
Method of the Year 2024: spatial proteomics - Nature Methods
Approaches for profiling the spatial proteome in tissues are the basis of atlas-scale projects that are delivering on their promise for understanding biological complexity in health and disease.
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Rong Fan @rongfan8.bsky.social · 07/12/2024
SPATIAL PROTEOMICS is the Method of the Year 2024!!! 🤩🤩🤩 www.nature.com/articles/s41...
nature.com
Method of the Year 2024: spatial proteomics - Nature Methods
Approaches for profiling the spatial proteome in tissues are the basis of atlas-scale projects that are delivering on their promise for understanding biological complexity in health and disease.
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Jan Schejbal @schejbaljlab.bsky.social · 04/12/2024
The position has been filled 😊 Thank you to all who boosted the signal and helped us find the great candidate. If anyone wants to peak behind the veil of the hiring process, my DMs are open.
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Jan Schejbal @schejbaljlab.bsky.social · 03/12/2024
I loved this episode🤩! We need to discuss the 'good enough' proteomics more (partly because that's the best I can do 😅). Accessibility is the key right now. We are moving in the right direction but further progress is so important.
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US HUPO @us-hupo.org · 22/11/2024
📣 Attention #USHUPO2025 submitters! 📣 All abstract disposition notices have been sent out! 🎉🎉🎉 Please check your inbox for updates. #USHUPO
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Alejandro Brenes @ajbrenes.com · 18/11/2024
#TeamMassSpec recent newcomers you'll want to follow: @jespervolsen.bsky.social @kmechtler.bsky.social @vadim-demichev.bsky.social @nesvilab.bsky.social @nlkproteomics.bsky.social
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PastelBio @pastelbio.bsky.social · 18/11/2024
UniProt: the Universal Protein Knowledgebase in 2025 academic.oup.com/nar... --- #proteomics #prot-paper
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Jan Schejbal @schejbaljlab.bsky.social · 18/11/2024
Few quick notes for new followers 🦋 Please add some bio ✍️ before starting to follow. I still have time to go through new followers and skip those without bio just as a precaution. If you add it later, I (and others) may not return to follow back and I would hate to miss out on great scientists👩‍🔬🧑‍🔬!
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Jan Schejbal @schejbaljlab.bsky.social · 18/11/2024
This is just insane 🤯 Also, I need to learn to properly cite blog posts 🫣
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Razvan Borza @rborza.bsky.social · 17/11/2024
⚠️THREAD OF ALL SCIENCE-RELATED STARTER PACKS! ⚠️ 🔄Share to help people finding its topic/field - STRUCTURAL BIOLOGY Structural Biology 1: bsky.app/starter-pack... Structural Biology 2: bsky.app/starter-pack... Crystallography: bsky.app/starter-pack... Synchrotron&CryoEM: bsky.app/starter-pack...
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Jan Schejbal @schejbaljlab.bsky.social · 17/11/2024
Non-science: November 17 marks the 35th anniversary of Velvet Revolution in my home country 🇨🇿 The freedom to travel, study and do what you love is not given and can be taken away. Let's not forget. Truth and love must prevail over lies and hatred (Václav Havel ✌️) #dikyzemuzem
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Alejandro Brenes @ajbrenes.com · 16/11/2024
Here's a new list for early career researchers (=not had your own lab for ages) in proteomics. Feel free to ask to be added or removed, I've tried to make a guess but could've got it wrong. I think it's good to also have an ECR network. #teamMassSpec go.bsky.app/Dp8PHX1
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Ben Neely @benneely.com · 16/11/2024
As of right now, it is not an exaggeration that I am getting many fold better science/proteomics content and interactions here, as well as some of my pop culture (eventually sports) and local info! A good time to get mine folks that *you* make the algorithm. bsky.social/about/blog/7...
bsky.social
Algorithmic Choice with Custom Feeds - Bluesky
Our implementation of algorithmic choice lets users customize one of the most important parts of their social media experience: their feed.
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Matthias Nau @matthiasnau.bsky.social · 30/10/2024
Want to make beautiful scientific figures? Easy! The NIH released a library of 2000+ free scientific illustrations called *BioArt*. Check it out! bioart.niaid.nih.gov #AcademicSky #PsychSciSky 🧠🟦 🧪
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Ben Neely @benneely.com · 15/11/2024
This week’s episode of #THEProteomicsShow, with me and @proteomicsnews.bsky.social, had Ilaria Piazza on and featured a lot of structural proteomics and the normal fun convo as we continue to ask “What is a proteomics?”. Find it wherever you find fine podcast. Enjoy!
Newest episode of the proteomics show. Can be found anywhere, even here https://open.spotify.com/show/3R8aGNVMKwfovkWWRVnu4E
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Jan Schejbal @schejbaljlab.bsky.social · 13/11/2024
Hi #TeamMassSpec, 👋 good to see everyone on 🦋 side. I am still looking for a PhD-level immunopeptidomics intern for summer 2025 with expected graduation by summer 2026. If you know of any good labs to check with, please let me know! Bruker timsTOF experience is a big plus.
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Harrison Specht @harrisons.bsky.social · 28/10/2024
Scientists in Proteomics Starter Pack! 🧪 go.bsky.app/3XETWrh Got suggestions? Drop them in the comments!
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Alejandro Brenes @ajbrenes.com · 10/11/2024
#teamMassSpec here is a starting pack in case you just moved over, or in case you've been absent for a while. This is #proteomics or #massspec related. The pack is not comprehensive but it's a start. go.bsky.app/HH7kqEh
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Jan Schejbal @schejbaljlab.bsky.social · 13/01/2024
It's official, I am coming to #USHUPO2024 🧑‍🏫 This will be my first US HUPO and I am bringing a poster on our another take at sensitive proteomics, this time looking at tears and how to unlock the knowledge hidden in thousands of banked samples from clinical trials. ⚡Lightning talk included ⚡1/2
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Jan Schejbal @schejbaljlab.bsky.social · 12/01/2024
#Proteomics #Job with Sapient www.linkedin.com/posts/sapien...
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Natalie Turner @natalieturnerau.bsky.social · 08/01/2024
Here’s my first SciComm article (accessible on LinkedIn)- titled ‘Academia vs Industry: the ECR dilemma’. I hoped to highlight a few important points for ECRs to consider, check it out, and let me know your thoughts! 👇 www.linkedin.com/posts/natali...
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PastelBio @pastelbio.bsky.social · 13/12/2023
Proteomics Analyst job with MASARYK UNIVERSITY | www.timeshighereduca... --- #proteomics #prot-jobs
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PastelBio @pastelbio.bsky.social · 11/12/2023
Signature peptide selection workflow for biomarker quantification using LC–MS-based targeted proteomics | Bioanalysis www.future-science.c... --- #proteomics #prot-paper
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bioRxivpreprint @biorxivpreprint.bsky.social · 29/11/2023
High-throughput and scalable single cell proteomics identifies over 5000 proteins per cell www.biorxiv.org/content/10.1101/202…
biorxiv.org
High-throughput and scalable single cell proteomics identifies over 5000 proteins per cell https://www.biorxiv.org/content/10.1101/2023.11.27.568953v1
The emergence of mass spectrometry (MS)-based single-cell proteomics (SCP) promise to revolutionize
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Brett Phinney @ucdproteomics.bsky.social · 20/11/2023
Don’t be a turkey 🦃. Join us for a proteomics radio hour this week www.clubhouse.com/invite/0dvur... hey - you should join us Nov 22, 10:00 am for Proteomics Old-Time Radio Hour.
clubhouse.com
Proteomics Old-Time Radio Hour - Clubhouse
Huuuge group voice notes with all of your friends
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Jan Schejbal @schejbaljlab.bsky.social · 17/11/2023
Today is November 17th, the International Students Day. In 1989 a celebration march of this day by students in Prague 🇨🇿 sparked the Velvet Revolution, one of few bloodless toppling of totalitarian regime. Thanks to their courage and faith in freedom I am allowed to do what I love. ✌️ Díky že můžem
en.m.wikipedia.org
International Students' Day - Wikipedia
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Jan Schejbal @schejbaljlab.bsky.social · 17/11/2023
Interesting context to the MS vs O-Link vs SomaScan debates. www.genomeweb.com/proteomics-p...
genomeweb.com
More Proteins, Less Profit: Why SomaLogic's Multiplexing Advantages Haven't Led to Greater Success
Researchers and industry observers indicated that past business decisions are the main driver of the company's performance, but the new CEO aims to right the ship.
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Ben Neely @benneely.com · 08/11/2023
Live skeeting for the #POTRHList. We (@ucdproteomics.bsky.social @leannewg.bsky.social and I) are on! 1/n
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Witold Szymański @witek-teammassspec.bsky.social · 01/11/2023
JOB ALERT! We are looking for technical support in our lab! Permanent position! No BS time-limited contracts! Have a look and apply! stellenangebote.uni-marburg.de/jobposting/e... #marburg #germany #proteomics #laboratory
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Michael MacCoss @maccoss.bsky.social · 19/10/2023
Have you tried DDM instead of ProteaseMAX? It is mass spec compatible and is commonly used for low input applications.
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Jan Schejbal @schejbaljlab.bsky.social · 13/10/2023
👋 US HUPO team, I know some of you are here. Tying abstract submission to registration is problematic for some in industry. Our travel budget is usually at zero by this time of year and we need to have abstract accepted before requesting money for registration. Kind of a catch-22 situation 🤷🏻
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Ben Neely @benneely.com · 10/10/2023
Hey @ucdproteomics.bsky.social, @itsbinir.bsky.social, @mattwfoster.bsky.social, @proteomicsnews.bsky.social et al. I made a "Help" feed for all things mass spec. Not just to ask, but to answer. This was the missing piece for me on Bluesci. (check the about feed option to see the terms, or ask)
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Oded Rechavi @odedrechavi.bsky.social · 06/10/2023
Crazy! "after using single-cell RNA sequencing to identify the most promising neuronal population, the authors showed that promoting axonal growth and path guidance to their natural target in this population restored walking in mice after complete spinal cord injury www.science.org/doi/10.1126/...
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Jan Schejbal @schejbaljlab.bsky.social · 05/10/2023
Ok team #proteomics, I have been wondering this for a while. Is there a similar comparison with MS-based plasma proteomics (SEER?) out there? I am sure we can do better than this.
Eldjarn, G.H., Ferkingstad, E., Lund, S.H. et al. Large-scale plasma proteomics comparisons through genetics and disease associations. Nature (2023). https://doi.org/10.1038/s41586-023-06563-x
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ProteomicsNews (Ben Orsburn) @proteomicsnews.bsky.social · 29/09/2023
Officially in the 2,000 proteins per (normal sized) single human cells club. 30 min, TIMSTOF SCP, diaPASEF (50 Da windows); IonOpticks 15cm (whatever they call it now, Spectacular?). Over half of these 400 cells checked in north of 2k proteins on SpectroNaut 18. Super cool preprint on the way
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ProteomicsNews (Ben Orsburn) @proteomicsnews.bsky.social · 29/09/2023
Expert PIs: I have 2 trainees who will likely be out of here by/before US HUPO. I’d like them to go but afraid my university/ their next jobs will rip them off for uncovered travel expenses. I can probably get flights, registration/ hotels paid now. Advice for transitions?
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