Samuel Miravet-Verde @samuelmiver.bsky.social · 01/10/2026Feedback and questions are very welcome! 000
Samuel Miravet-Verde @samuelmiver.bsky.social · 01/10/2026Special thanks to: 🔹All co-authors for their support and contributions 🔹All collaborators and OMDB users 🔹The @hfspo.bsky.social and @snsf.ch for supporting this research. 110
Samuel Miravet-Verde @samuelmiver.bsky.social · 01/10/2026🔹 Under warming, microbial richness declines faster than relative abundance 🔹 Grouping species into four thermal clusters revealed links to genome streamlining and protein thermostability 🔹 A microbe's preferred temperature can be predicted from the physicochemical properties of its proteins 100
Samuel Miravet-Verde @samuelmiver.bsky.social · 01/10/2026What we present: 🔹 OMDB brings together 274,282 genomes forming 31,058 species-level clusters, all searchable at lnkd.in/e-xT9MPP 🔹 Sea surface temperature can be predicted from microbial community composition, driven by closely related taxa occupying different thermal niches 100
Samuel Miravet-Verde @samuelmiver.bsky.social · 01/10/2026This project brings together microbial ecology, microbiology and AI to tackle a question that matters globally: how will ocean microbes respond as the ocean warms? And for the same price, you get a fully accessible collection of marine microbial genomes :) 100
Samuel Miravet-Verde @samuelmiver.bsky.social · 01/10/2026I'm proud to share the latest @microbiomeresearch.bsky.social preprint introducing the Ocean Microbiomics Database (OMDB). 📄 Read the preprint: doi.org/10.64898/202... #MicrobialEcology #OceanScience #ClimateChange #Metagenomics #AI #Bioinformatics 141
Reposted by Samuel Miravet-VerdeEMBL-EBI Training @training.ebi.embl.org · 26/09/2026'Reconstructing ocean life: metagenome-assembled genomes in marine research', the webinar, will run on 9 October 2026 from 11:00 – 12:30 UK time: www.ebi.ac.uk/training/eve... Registration is free but essential. @samuelmiver.bsky.social @microbiomeresearch.bsky.social 🧬📊🔬 002
Reposted by Samuel Miravet-VerdeMicrobiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 23/04/2026How diverse are E. coli capsules? In collaboration with @mucosalimmunology.bsky.social we mapped this uncharted diversity in >66k genomes with a new tool, kTYPr, paving the way to capsule-targeted therapies and vaccines www.nature.com/articles/s41... @eth-microbiology.bsky.socialnature.comIn silico typing maps the natural diversity of Escherichia coli transporter-dependent capsules - Nature MicrobiologyEscherichia coli ABC transporter-dependent capsule gene analysis alongside the development and application of the kTYPr in silico capsule typing tool uncovers E. coli capsule diversity across environm... 065
