iiinova — where your digital self keeps evolving

Reposted by Ramon Massoni Badosa

Itai Yanai @itaiyanai.bsky.social · 14/10/2025

Come learn the tricks of giving a BAD talk: begin the process by organizing your slides - the more, the better, try to impress, run over your time, embrace distractions, and treat questions as threats! Join us tomorrow at Weill Cornell for this month's Postdoc Night Science NYC!

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Ramon Massoni Badosa @rmassonix.bsky.social · 07/10/2025

Dear Postdocs of New York: Next Wednesday, we’re closing out an amazing year of NYC Postdoc Night Science Club sessions at our very own @weillcornell.bsky.social ! If you’re interested in giving engaging, memorable talks, you cannot miss this one. Details below, hope to see you all there!

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Reposted by Ramon Massoni Badosa

Jeff Vierstra @jeffvierstra.bsky.social · 13/05/2025

PSA: We just finished processing nearly all public ATAC-seq datasets from SRA (about 22,000 datasets). (Not?) Surprisingly, we had to throw-out nearly ~50% because they were low-quality (low signal-to-noise, duplicate rate, etc.). Check quality before analysis (TSS-enrichment is not sufficient!).

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Ramon Massoni Badosa @rmassonix.bsky.social · 29/05/2025

Dear NYC postdocs: the Postdoc Night Science is coming to our very own New York Genome Center on June 2, 5:30-7:30 pm! Let's dive into the art of asking the right questions, then network with fellow postdocs & find new science buddies 😊 Register below!

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Reposted by Ramon Massoni Badosa

Itai Yanai @itaiyanai.bsky.social · 14/05/2025

NYC Postdocs! Join us for Night Science at the New York Genome Center on June 2nd for a discussion on the creative process of finding novel questions. This time we hit the bar after! Register: docs.google.com/forms/d/1s9W... @stearnslab.bsky.social @kelseymonson.bsky.social @rmassonix.bsky.social

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Reposted by Ramon Massoni Badosa

Anshul Kundaje @anshulkundaje.bsky.social · 24/01/2025

I wanted to write briefly about a very pleasant experience we recently had coordinating and collaborating closely on competing publications with 2 other teams. 1/

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Reposted by Ramon Massoni Badosa

Anshul Kundaje @anshulkundaje.bsky.social · 13/01/2025

@anusri.bsky.social first author & developer of ChromBPNet is looking for opportunities in industry in ML for bio/genomics. She is an excellent rigorous scientist (as u can see from the paper). Very strongly recommend her. Plz reach out to her if u have openings. Plz forward.

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Reposted by Ramon Massoni Badosa

Benoit Bruneau @benoitbruneau.bsky.social · 13/01/2025

There is a huge difference between biochemically defined motifs and real life chromatin sites. In our 2016 paper we found all sorts of TFBS variants that would have never showed up in any database www.sciencedirect.com/science/arti...

sciencedirect.com

Complex Interdependence Regulates Heterotypic Transcription Factor Distribution and Coordinates Cardiogenesis

Transcription factors (TFs) are thought to function with partners to achieve specificity and precise quantitative outputs. In the developing heart, he…

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Ramon Massoni Badosa @rmassonix.bsky.social · 04/01/2025

Cant wait to read it😍 Felicitats Pau!!

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Ramon Massoni Badosa @rmassonix.bsky.social · 03/01/2025

One thing I didn't expect in the US is that I'd pay almost a third of my salary in taxes :( This morning, the FICA taxes kicked in..

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Ramon Massoni Badosa @rmassonix.bsky.social · 23/12/2024

Sharing code and data should also be required in the preprint. People are starting to use preprints as a way of advertising their science before it's published, sometimes with half-baked results. We should subject preprints to a higher level of rigor, with fully reusable, transparent and open data.

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Reposted by Ramon Massoni Badosa

Prachee Avasthi @pracheeac.bsky.social · 22/12/2024

Some of the best ways to take advantage of preprints: share broadly that you posted one but also to send your preprint directly to colleagues who might care and may have missed it. Just as you like to be alerted to research you care about and may not have seen yet, so does everyone else

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Ramon Massoni Badosa @rmassonix.bsky.social · 18/12/2024

Still in 2024, I see way too many papers that don't share their data openly. I understand that in some cases the raw genomic reads need to have restricted access, but there's no excuse not to share any count matrix or processed object openly in repositories such as FigShare or Zenodo.

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