iiinova — where your digital self keeps evolving

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PacBio @pacbio.bsky.social · 21/02/2025

NEW: HiFi now brings Hi-C to #HiFisequencing with CiFi. Traditional short-read Hi-C falls short in repetitive and low-complexity regions, but #PacBio HiFi delivers with superior accuracy and lower input needs. bit.ly/4b8k10m #AGBT #AGBTGM

bit.ly

CiFi: Accurate long-read chromatin conformation capture with low-input requirements | bioRxiv

bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution

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PacBio @pacbio.bsky.social · 24/02/2025

With #PacBio Compatible, #HiFisequencing fits seamlessly into any lab and any omics application. Visit our suite at #AGBT in Lanai Suite 289 to explore our industry partnerships and learn how PacBio technology can elevate your research. #AGBT25

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Michelle Stitzer @mcstitzer.bsky.social · 27/01/2025

New preprint featuring my favorite maize-relatives, the Andropogoneae! We sequenced the genomes of 27 species, including lemongrass, kangaroo grass, little and big bluestem, and more -- key species that shape grasslands and prairies worldwide. www.biorxiv.org/content/10.1...

On top, five Andropogoneae grass species, from left to right Zea mays subsp. mays, Hemarthria uncinata, Miscanthus sinensis, Sorghum bicolor, Andropogon gerardi. On bottom, a map of the world, with collection sites of Andropogoneae grasses in points. A green background shows the distribution of Andropogoneae grasses throughout tropical and temperate latitudes

On left, a phylogeny of Andropogoneae species, with 14 independent polyploidy origins noted. On right, genome size and repeat content of each assembly. Across all assemblies, average assembly size is 1.9 Gb, and average repeat size is 1.5 Gb.

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RCAC Bioinformatics @ Purdue University @rcac-bioinfo.bsky.social · 31/01/2025

🚀 EM Server Webinar: Protein Modeling with DiffModeler & DeepMainmast! 🧬 📅 Feb 5, 2025 🎙️ Dr. Daisuke Kihara, Dr. Genki Terashi, Pranav Punuru Topics: DiffModeler & DeepMainmast advanced cryo-EM protein modeling, DAQ tools, CryoREAD & more. 🔗 register: kiharalab-events-5ab900351568.herokuapp.com

em.kiharalab.org

EM Server

Kiharalab EM Server

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RCAC Bioinformatics @ Purdue University @rcac-bioinfo.bsky.social · 17/01/2025

Purdue students/staff/faculty: Join us for The Genomics Exchange, a weekly online series for bioinformatics & genomics enthusiasts! 🌟 🗓️ First session: Friday, Jan 17, 2025 ⏰ Time: 11:00 AM EST 📍 Online via Teams Register 👉: forms.office.com/r/BtHXQ1tEkQ Let’s connect & exchange ideas! 🚀

forms.office.com

Microsoft Forms

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Stephen Turner @stephenturner.us · 12/12/2024

Published: Movi: A fast and cache-efficient full-text pangenome index www.cell.com/iscience/ful... 🧬🖥️🧪

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Rosen Center for Advanced Computing @rcac-purdue.bsky.social · 26/11/2024

What an amazing event! The team from Purdue and the Rosen Center for Advanced Computing had a packed week! We were thrilled to have had a chance to showcase all the amazing things happening on Purdue’s campus. Thanks to everyone who helped make this week special. #BOILERUP!

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Rosen Center for Advanced Computing @rcac-purdue.bsky.social · 09/12/2024

Congratulations to the students from Purdue Engineering on successfully presenting their capstone project! The group worked with RCAC to develop and implement an advanced, real-time predictive maintenance system using AI and IoT sensors for RCAC's #HPC infrastructure. #TheNextGiantLeap

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RCAC Bioinformatics @ Purdue University @rcac-bioinfo.bsky.social · 09/12/2024

🚨 Purdue Libraries is hiring! 🚨 Looking for an undergrad to join a Gamification project this Spring! 🕹️ 💻 Skills: Unreal Engine, C++, Blueprints, GitHub 📍 Link to apply: hcm-us10.hr.cloud.sap/sf/jobreq?jo... Know someone who might be interested? Tag them! 🙌 #UnrealEngine #Gamedev #Purdue

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RCAC Bioinformatics @ Purdue University @rcac-bioinfo.bsky.social · 04/12/2024

🚨 Summer '25 Paid Internships! Join Purdue’s Anvil Research Experience for Undergraduates for hands-on experience in AI, bioinformatics, & data centers. $680/week + housing. Apply now: purdue.ca1.qualtrics.com/jfe/form/SV_... 🌟

purdue.ca1.qualtrics.com

Anvil REU Applications

Application submission for the Purdue Anvil REU program.

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Stephen Turner @stephenturner.us · 27/11/2024

easySCF: A Tool for Enhancing Interoperability Between R and Python for Efficient Single-Cell Data Analysis academic.oup.com/bioinformatics/adv… 🧬🖥️🧪 github.com/xleizi/easySCF

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Stephen Turner @stephenturner.us · 27/11/2024

AlphaFold predictions on whole genomes at a glance www.biorxiv.org/content/10.1101/202… 🧬🖥️🧪

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Milot Mirdita @milot.bsky.social · 27/11/2024

MMseqs2 Release 16 Highlights: GPU-accelerated search📄, ORF or new 6-frame translated search modes, contig taxonomy always keeps the longest ORF, bug fixes (reduced memory and higher sensitivity) and relicensed as MIT 📄 biorxiv.org/content/10.1... 💾 mmseqs.com and 🐍Bioconda 🖥️🧬🧶

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Ming Tommy Tang @tommytang.bsky.social · 26/11/2024

Pylustrator offers an interactive interface to find the best way to present your data in a figure for publication. Added formatting and styling can be saved by automatically generated code. pylustrator.readthedocs.io/en/latest #python

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Arun Seetharam @arnstrm.bsky.social · 26/11/2024

annoy a bioinformatician with these simple phrases: "Can't you just use Excel?" "Isn't BLAST basically Google for DNA?" "But did you annotate it?"

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Stephen Turner @stephenturner.us · 25/11/2024

PanKB: An interactive microbial pangenome knowledgebase for research, biotechnological innovation, and knowledge mining academic.oup.com/nar/advance-articl… 🧬🖥️🧪

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Stephen Turner @stephenturner.us · 21/11/2024

"biology can remain hard longer than you can remain solvent" AI-first biology: five years on press.airstreet.com/p/ai-first-biol…

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Stephen Turner @stephenturner.us · 19/11/2024

Blackbird: structural variant detection using synthetic and low-coverage long-reads www.biorxiv.org/content/10.1101/202… 🧬🖥️🧪 github.com/1dayac/Blackbird

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Stephen Turner @stephenturner.us · 31/10/2024

Highly accurate assembly polishing with google/DeepPolisher & PHAROAH www.biorxiv.org/content/10.1101/202… 🧬🖥️ github.com/google/deeppolisher and github.com/miramastoras/PHARAOH

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Stephen Turner @stephenturner.us · 31/10/2024

The Wild West of spike-in normalization www.nature.com/articles/s41587-024-… (read free: rdcu.be/dUiGQ) 🧬🖥️ Code: github.com/lapatel22/spike_in_corre…

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RCAC Bioinformatics @ Purdue University @rcac-bioinfo.bsky.social · 31/10/2024

🚀 New Helixer tutorial for gene prediction! Predict genes in complex genomes like maize with 1 command—no repeatmasking, no extra data needed, all under 4 hrs! 🌽💻 Check it out: rcac-bioinformatics.readthedocs.io/en/latest/he... #Bioinformatics #Genomics #RCAC

rcac-bioinformatics.readthedocs.io

Gene prediction using Helixer — RCAC bioinformatics tutorials

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Stephen Turner @stephenturner.us · 22/10/2024

I created a genomics+bioinformatics starter pack. If I left you off, *please* reply and I'll add you! go.bsky.app/B5YYBfq

go.bsky.app

Genomics+Bioinformatics Starter Pack 🧬🖥️

Join the conversation

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Stephen Turner @stephenturner.us · 25/10/2024

This week's recap highlights protein design with RoseTTAFold, surveillance with wastewater sequencing, T2T human genomes, Vitessce for visualization of multimodal spatial single-cell data, and Taxometer for taxonomic classification of metagenomics contigs... blog.stephenturner.us/p/weekly-rec... 🧬🖥️

blog.stephenturner.us

Weekly Recap (Oct 2024, part 4)

Protein design with RoseTTAFold, wastewater sequencing T2T human genomes, single-cell spatial transcriptomics, taxonomic classification, ...

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Stephen Turner @stephenturner.us · 14/10/2024

Cluster-efficient pangenome graph construction with @nf-co.re pangenome academic.oup.com/bioinformati...

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Tyson Barrett @healthandstats.bsky.social · 26/10/2024

Some of my favorite new things with data.table in #rstats (Ignore the CRAN not ok, we are working on some R C API changes still)

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RCAC Bioinformatics @ Purdue University @rcac-bioinfo.bsky.social · 26/10/2024

🚀 Welcome to RCAC Bioinformatics! We’re here to support bioinformatics research with resources, expertise, and custom pipelines. Follow us for updates, tutorials, and collaboration opportunities! 🧬💻 #Bioinformatics #RCAC

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