Reposted by @rambhaskara.bsky.socialSK @silverlens.bsky.social · 03/11/2025Congratulations to Team India in Women's Cricket Worldcup! A historic moment for a team that fought Misogyny and earned the respect of a country! 021
Reposted by @rambhaskara.bsky.socialDikic lab @dikiclab.bsky.social · 24/03/2025Getting all set up for the conference!! We are looking forward to 4 days of exciting science 🤗 #FCQC25 #autophagy #proteostasis @ibc2-gu.bsky.social @sfb1177.bsky.social 073
Reposted by @rambhaskara.bsky.socialSiewert-Jan Marrink @cg-martini.bsky.social · 24/03/2025Martini 3 - IDP is out! Improved parameters for disordered proteins, great work from Liguo Wang: www.nature.com/articles/s41...nature.comMartini3-IDP: improved Martini 3 force field for disordered proteins - Nature CommunicationsHere, the authors introduce Martini3-IDP, a refined model for disordered proteins that addresses prior over-compact structures. Validated across diverse systems, it captures IDP interactions and biomo... 0209
Reposted by @rambhaskara.bsky.socialYC Lin @yiechanglin.bsky.social · 17/03/20251/ In my final project as part of the @corrylab.bsky.social, we show the bacterial TAM complex facilitates the spontaneous flow of phospholipids from the IM to the OM in MD simulations.. www.biorxiv.org/content/10.1101/2025.03.12.642747v1 59719
Reposted by @rambhaskara.bsky.socialSFB 1551 - Collaborative Research Centre 1551 @sfb1551.bsky.social · 11/03/2025We are proud to share a new publication from Lukas Stelzl Lab @lstelzl.bsky.social "Deciphering driving forces of biomolecular phase separation from simulations" was just published on Current Opinion in Structural Biology. Congratualtions to the authors! www.sciencedirect.com/science/arti...sciencedirect.comDeciphering driving forces of biomolecular phase separation from simulationsThe formation and modulation of biomolecular condensates as well as their structural and dynamic properties are determined by an intricate interplay o… 052
rambhaskara.bsky.social @rambhaskara.bsky.social · 13/03/2025Just dropped on bioRxiv! Our team has assembled a data-driven map of the human E3 ligome. Check out our preprint! #E3_ligome #ubiquitination #dataIntegration #metriclearning www.biorxiv.org/content/10.1...biorxiv.orgMulti-scale classification decodes the complexity of the human E3 ligomeE3 ubiquitin ligases are key regulators of protein homeostasis, targeting specific proteins for degradation via the ubiquitin-proteasome system (UPS). They provide crucial substrate specificity, makin... 042
Reposted by @rambhaskara.bsky.socialPLUMED @plumed.org · 04/03/2025The paper describing our community effort to collect and organize #plumed tutorials has been published in the Journal of Chemical Physics, as part of the Michele Parrinello Festschrift! doi.org/10.1063/5.02...doi.orgPLUMED Tutorials: A collaborative, community-driven learning ecosystemIn computational physics, chemistry, and biology, the implementation of new techniques in shared and open-source software lowers barriers to entry and promotes 03010
Reposted by @rambhaskara.bsky.socialRafael C. Bernardi @rcbernardi.bsky.social · 17/02/2025🚀 First Bluesky Post! 🎉 VMD 2.0 Alpha is here! Released today at BPS 2025, this is the biggest update in 30 years—new UI, real-time ray tracing, fast surfaces, UHD & touchscreen support. Monthly updates coming in 2025! Try it now! #VMD #BPS2025 #MolecularVisualization www.ks.uiuc.edu/Research/vmd... 311442
Reposted by @rambhaskara.bsky.socialAndrew White 🐦⬛ @andrew.diffuse.one · 14/02/2025Molecular dynamics requires a lot of expert knowledge to set-up and analyze simulations. We set out to automate it with LLM agents: MDCrow! 1246
Reposted by @rambhaskara.bsky.socialAlexandre Bonvin @amjjbonvin.bsky.social · 14/02/2025I have two open postdoctoral researcher positions in my group. I am looking for applicants with interest and expertise in computational structural biology and research software development. These positions are part of GANANA, a collaborative European/Indian project Check www.uu.nl/en/organisat...uu.nlPostdoc position in computational structural biologyJoin our team and contribute to the development of HADDOCK, our integrative modelling software, as part of an exciting EU-India research collaboration. 11620
rambhaskara.bsky.social @rambhaskara.bsky.social · 07/01/2025Find out how the switching of receptor isoforms governs ER morphology during Myogenesis. Great collaboration with @pgrumati.bsky.social lab Thanks to @sfb1177 selective autophagy. www.embopress.org/doi/full/10.... 050
