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Radhika Jangi

@radster95.bsky.social
49 followers 68 following 6 posts

Bio student in the Battle Lab at JHU Interested in dynamic effects of genetic variation across differentiation

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Reposted by Radhika Jangi
Steven Salzberg @stevensalzberg.bsky.social · 13/09/2026
Check out our new preprint on thousands of novel recursive exons in the human genome (if you don't know about recursive exons, they are pretty cool), led by PhD student David Bass @davidb256.bsky.social : www.biorxiv.org/content/10.6...
biorxiv.org
Large-scale analysis of transcript data reveals thousands of recursive splicing events in human introns
Recursive splicing (RS) is a process in which an intron is removed from a nascent RNA molecule in two or more splicing events rather than one. We introduce a novel approach for detecting recursive spl...
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bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/07/2026
Navigating the pangenome coordinate system with Shredtools www.biorxiv.org/content/10.64898/20…
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Arjun Biddanda @aabiddanda.github.io · 22/01/2026
Our work on understanding how common genetic variants contribute to recombination and aneuploidy risk is published!
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Rajiv McCoy @rajivmccoy.bsky.social · 21/01/2026
Pregnancy loss is common in humans, and chromosomal abnormalities are the leading cause. Using genetic data from ~140,000 IVF embryos, we show that maternal variation in meiosis genes influences recombination and aneuploidy risk. First authors: @saracarioscia.bsky.social & @aabiddanda.github.io
nature.com
Common variation in meiosis genes shapes human recombination and aneuploidy - Nature
Analysis of data from pre-implantation genetic testing sheds light on the genetic basis of meiotic-origin aneuploidy, the leading cause of human pregnancy loss, identifying common genetic variants ass...
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Dr. Jean Fan @jef.works · 03/12/2025
Check out our new preprint on STcompare for identifying spatially differential gene expression patterns at structurally matched locations across spatial transcriptomics datasets. Preprint on bioRxiv: www.biorxiv.org/content/10.1... R package on Github: github.com/JEFworks-Lab... #AcademicSky 🧵👇
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Radhika Jangi @radster95.bsky.social · 27/11/2025
Go Prabuddha!!! 🥳🥳
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Ben Strober @bennystrobes.bsky.social · 07/10/2025
Exciting updates!! (1) I just opened my lab at Boston Children’s Hospital (Harvard-affiliated) (2) I’m hiring a postdoc focused on integrating GWAS and functional genomic data. Reach out if you’re interested or connect at ASHG next week! (3) Learn more at stroberlab.com
stroberlab.com
Strober Lab
The Strober lab is a computational group at Boston Children's Hospital (a Harvard Medical School affiliated hospital) focused on developing statistical and machine learning tools applied to human gene...
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Reposted by Radhika Jangi
Josh Weinstock @joshweinstock.bsky.social · 22/07/2025
Really excited to share our new PRS method, developed with @aprilkim.bsky.social and @alexisbattle.bsky.social ! Our approach is to use a lot of recently developed functional annotations to better estimate the weights of the SNPs. www.medrxiv.org/content/10.1...
medrxiv.org
Polygenic prediction of phenotypes with a neural empirical Bayes approach
Polygenic risk scores (PRS) estimate the expected value of a phenotype based on individual genotypes. Although statistical approaches for calculating PRS have advanced considerably in recent years, fe...
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Radhika Jangi @radster95.bsky.social · 26/06/2025
Delicious post!!!
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Yoav Gilad @ygilad.bsky.social · 10/06/2025
People always stop me in the street to ask: "Yoav, where are the disease-associated eQLTs? We found a lot in GTEx but we can't find anymore. Do you know where they are?" (For the record, no one has ever asked me this, but it is a really good question!) I think we know where they are.
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Yoav Gilad @ygilad.bsky.social · 17/01/2025
My book, An Intuitive Primer on Effective Functional Genomics Study Design, is published! I’d really appreciate it if you could help spread the word, and I’d love to hear your thoughts and feedback. I hope people will find it useful. It’s available on Amazon: tinyurl.com/mx2hewen
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Mingyuan "Merlin" Li @supmerlin.bsky.social · 17/05/2025
Heading to Minneapolis next week to share this work at STATGEN2025!
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Sara Carioscia @saracarioscia.bsky.social · 16/05/2025
I'm defending my PhD next Friday, May 23!(!!!!). I'll be highlighting our work looking at aneuploidy in early human development. If you're interested I'd love to have you join via Zoom (DM me for info) or on the Homewood campus!
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Radhika Jangi @radster95.bsky.social · 15/05/2025
Hire him!! You won’t regret it!!!
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Sara Carioscia @saracarioscia.bsky.social · 07/05/2025
If you are here at #bog25 please check out my poster (number 87) tonight! 😁 Showing our work on common variation associated with aneuploidy in human embryos
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Vikram Shivakumar @vikramshivakumar.bsky.social · 09/05/2025
Excited to share our latest work on comparing and visualizing multiple genome assemblies to identify conservation and structural variation in pangenomes with Mumemto! Check out poster 250 at #bog25 if you are here. New preprint coming very soon 👀
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Radhika Jangi @radster95.bsky.social · 05/05/2025
Amazing work by my buddy and colleague @supmerlin.bsky.social and Wenhe identifying treatment response specific and dynamic effects of genetic regulation in developmental contexts!!
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Radhika Jangi @radster95.bsky.social · 22/04/2025
Extremely hirable guy 10/10
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Arun Das @arun-das.bsky.social · 21/04/2025
Hello Bluesky 👋🏾 I’m going to be defending my thesis on Wednesday, so I thought this was as good a time as any to introduce myself and my work. I’m Arun Das, I’m a PhD student in Schatz Lab @ JHU, and my work broadly focuses on algorithms to improve accessibility and representation in genomics.
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Arjun Biddanda @aabiddanda.github.io · 07/04/2025
Thrilled to see this work out - its been fascinating to look at statistical genetics in these IVF embryo datasets underlying meiotic aneuploidies and recombination! Joint work led with @saracarioscia.bsky.social. See thread below, thoughts welcome! www.medrxiv.org/content/10.1...
medrxiv.org
Common variation in meiosis genes shapes human recombination phenotypes and aneuploidy risk
The leading cause of human pregnancy loss is aneuploidy, often tracing to errors in chromosome segregation during female meiosis. While abnormal crossover recombination is known to confer risk for ane...
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Reposted by Radhika Jangi
Rajiv McCoy @rajivmccoy.bsky.social · 07/04/2025
Aneuploidy is the leading cause of pregnancy loss. In work led by @saracarioscia.bsky.social and @aabiddanda.bsky.social, we reanalyzed genetic testing data from 139,416 IVF embryos to discover variants associated with recombination phenotypes and aneuploidy risk. www.medrxiv.org/content/10.1...
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Sara Carioscia @saracarioscia.bsky.social · 07/04/2025
My main PhD work is up! See thread below. I would love to discuss! www.medrxiv.org/content/10.1...
medrxiv.org
Common variation in meiosis genes shapes human recombination phenotypes and aneuploidy risk
The leading cause of human pregnancy loss is aneuploidy, often tracing to errors in chromosome segregation during female meiosis. While abnormal crossover recombination is known to confer risk for ane...
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Reposted by Radhika Jangi
Bohan Ni @bohanni.bsky.social · 26/03/2025
Happy to share our work characterizing functional rare SVs in rare diseases with long-read genome sequencing and transcriptomic outlier data: genome.cshlp.org/content/earl...
genome.cshlp.org
Integration of transcriptomics and long-read genomics prioritizes structural variants in rare disease
An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms
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Vikram Shivakumar @vikramshivakumar.bsky.social · 26/02/2025
This is possible because we can now merge new assemblies as they are released easily without re-running Mumemto on the whole pangenome! We're just providing the non-zoomable image while we await the final HPRC publication. Preprint: www.biorxiv.org/content/10.1... Github: github.com/vikshiv/mume...
github.com
GitHub - vikshiv/mumemto: Mumemto: multi-MUM and MEM finding across pangenomes
Mumemto: multi-MUM and MEM finding across pangenomes - vikshiv/mumemto
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Alexis Battle @alexisbattle.bsky.social · 29/01/2025
Fortunes at the Battle lab lunar near year celebration were on brand. Love the lab. Watch out for confounders this year everyone, and happy new year.
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Vikram Shivakumar @vikramshivakumar.bsky.social · 06/01/2025
Excited to share a preprint for (w/ @benlangmead.bsky.social) our new tool, Mumemto, on biorxiv! Mumemto finds multi-MUMs across pangenomes (i.e. mummer but for pangenomes). It can rapidly visualize synteny, identify misassemblies, and accelerate core genome and multiple alignment, highlighting SVs.
biorxiv.org
Mumemto: efficient maximal matching across pangenomes
Aligning genomes into common coordinates is central to pangenome analysis and construction, but it is also computationally expensive. Multi-sequence maximal unique matches (multi-MUMs) are guideposts ...
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