Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

v1.0.0 - 2026-09-28 Initial release of nf-core/datasync, created with the nf-core template. Added Samplesheet-driven copying of files and directories between local paths and rclone-supported objec...

Added Added MultiQC plot for DeepLC retention time calibration per sample #461 Added MultiQC box plot of aligned residuals in the quant workflow #462 Added manifest.diagram to nextflow.config by @...

Initial release of nf-core/tumourevo a bioinformatics pipeline to model tumour evolution that can run the following tools: VEP CNAqc TINC VIBER MOBSTER PyClone-VI ctree SparseSignatures SigProfiler

An in-person hackathon held in Barcelona

Changed #192 Updated nf-core modules and subworkflows to latest. mgnifam 4.0.0 now also writes a <chunk>_mgnifam_stats.json run summary, saved with the existing --save_iterative_family_metadata, ...

An in-person hackathon held in Barcelona

An in-person hackathon held in Barcelona

First stable release of nf-core/hadge, combining 11 hashing- and genotype-based deconvolution methods (vireo, demuxlet, freemuxlet, souporcell, htodemux, multiseq, bff, demuxem, gmm-demux, hasheddr...

An in-person hackathon held in Barcelona

An in-person hackathon held in Barcelona

Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

WarningThis 3.0.0 major release have breaking changes. Samplesheets and command lines written for v2.0.0 will not work unmodified. See the v3.0.0 changelog notes for details. Patch release fixing ...

A big release with new user-facing options, several bug fixes for edge cases (Azure, NCBI GTFs, kallisto-only runs, UMI-deduplicated BAMs), and two nf-core template updates. New features Screen co...

Alt: Ted Lasso Coach Beard Shouts 'Let's Go!'

Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

Added #95 - Accept gzipped input files throughout the pipeline, for every samplesheet column and individual file parameter alike (#76) (by @erikrikarddaniel) Changed #95 - Check the file name ex...

Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

Initial release of the nf-core/stableexpression pipeline. The full commit history is available here.

WarningThis is a major release with breaking changes. Samplesheets and command lines written for v2.0.0 will not work unmodified. See the migration notes below. Added New samplesheet-driven input...

Initial release! funcprofiler can handle single or paired-end short read data, and can run the following tools: HUMANnN RGI mifaser fmh-funprofiler

An in-person hackathon held in Barcelona

2.0.0 - 'Saffron Vulture' - [2026-09-18] This is a major release, with breaking changes. The pipeline now implements topics to collect software version, the minimum nextflow version is 25.10.4. v2....

v1.2.0 - 2026-09-16 Added (#312) - Fix #282 - drop unmapped reads from the contig-coverage alignment and unmapped read pairs from the alignments used in polishing and consensus refinement, and add...

Fixed Fixed ORTHO_SEQ_COUNT reading Orthogroups.tsv via a manually-built path into OrthoFinder's output directory, which is unsafe on cloud storage. It now uses OrthoFinder's emited channel orthog...

nf-core/riboseq v2.0.0 - Nimble Narwhal This is a major release. nf-core/riboseq grows from a single-caller ORF-detection pipeline into a full cross-caller ORF discovery and quantification suite, w...

What's Changed Add AGENTS.md file with nf-core agent instructions by @maxulysse in #398 Back to dev by @maxulysse in #399 Add volume=40gb to nf-test runners by @maxulysse in #401 Important! Templa...

This patch release fixes BBNorm failing under Singularity/Apptainer when the host's $TMPDIR isn't bind-mounted into the container -- surfaced as a misleading Cannot run program "bgzip" error even t...