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Guenter Resch @nexperion.net · 18/06/2026

Two more recordings from the #SerialEM Community Meeting 2026 are available on our channel at vimeo.com/serialem : * D. Bollschweiler & T. Schaefer - [...] A Multi-User Service Facility Perspective on SerialEM * P. Kirchweger - Advances in cryo-STET: from 3D-cryo-STET to 3.5D- and 4D-cryo-STET

vimeo.com

SerialEM Talks and Tutorials

SerialEM is a widely-used program that supports several kinds of automated acquisition from transmission electron microscopes: tilt series, single particle data,…

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Guenter Resch @nexperion.net · 04/06/2026

The feedback from participants at the #SerialEM Community Meeting 2026 in April — and the future of this format — have been central topics in our recent discussions. (Photo by Daniel Bollschweiler)

David Mastronarde and Guenter Resch at the stage of the 2026 SerialEM Community Meeting.

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Reposted by Guenter Resch

Simon Fromm @simonfromm.bsky.social · 11/05/2026

New preprint🧊🔬Introducing LowDoseWizard—a guided SerialEM workflow for rapid, standardised cryo-TEM setup! Setting up low-dose can be slow & daunting, especially for new users. LowDoseWizard automates optics, camera, and alignment steps from minimal input — full setup in <15 min. #cryoEM #SerialEM

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Guenter Resch @nexperion.net · 23/09/2025

Happy to announce "Technical Innovations Using #SerialEM: A Community Meeting", a new format of hybrid meeting David Mastronarde and I are organizing in April 2026. For more info, a preliminary list of speakers, pre-registration etc. visit www.nexperion.net/semcm2026

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Guenter Resch @nexperion.net · 04/06/2025

Yesterday, we took microscopy to a whole new level! 🔬 Nexperion visited a local kindergarten to explore the amazing microcosmos with the next generation of scientists. Did not succeed to install #SerialEM on this microscope, though.

Details of a feather seen in a stereo microscope

A fly's compound eye seen in a stereo microscope

The tip of a red ball pen seen in a stereo microscope

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Reposted by Guenter Resch

Juan Nunez-Iglesias @jni.codes · 15/05/2025

Any scikit-image fans in Vienna? The skimage team would like to meet in Vienna for a code sprint Aug 14-16 ahead of EuroSciPy. We'd super appreciate it if someone's workplace can host us! All we need is electricity, natural light, and (most important) walking distance to coffee. ☕️😂🙏

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Guenter Resch @nexperion.net · 25/03/2025

A map of European countries with the product they were the world's #1 exporter of in 2023 (found on Reddit, source unknown) ... if this is correct, I am really proud of our Czech neighbours (while Austria is exporting "flavoured water"?!).

A map of Europe ... Czechia is labelled with "non-optical microscopes"

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Matthijs Dorst @mattneuro.dorst-lab.org · 06/03/2025

"Yes hello, police? I'd like to report a murder?" [...] "No, it hasn't happened yet, but once I find out who did this..."

Two very crusty precision forceps, the tips bend entirely out of shape

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Reposted by Guenter Resch

Fabian Eisenstein @eisfabian.bsky.social · 17/12/2024

SPACEtomo v1.2 is online! github.com/eisfabian/SP... - Improved GUIs for lamella detection, target selection and CLEM registration make it the best target selection workflow for PACEtomo on any kind of lamella sample. - Easier installation and configuration Any feedback is much appreciated! :)

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Guenter Resch @nexperion.net · 11/12/2024

The #SerialEM source repositories are now available on github, in addition to Mercurial: bio3d.colorado.edu/SerialEM/#So...

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Guenter Resch @nexperion.net · 14/11/2024

I am already running a service to notify about new #SerialEM releases by email at nexperion.net/serialemupdatenotices, but considering to make this a Bluesky bot as well ... is this something the #teamtomo #cryoEM #cryoET community would be interested in?

nexperion.net

Nexperion - SerialEM Update Notices

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Lars-Anders Carlson @lacarlson.bsky.social · 11/11/2024

Repost appreciated: Open #PhDposition in my group! Join us in Umeå, 🇸🇪 to uncover how arboviruses remodel the cellular interior. In situ #cryoET with great #virology and #biophysics collaborators. Customisable project. Application deadline 15 December. More info: www.carlsonlab.se/join/

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Guenter Resch @nexperion.net · 12/11/2024

Better late than never: no more excuses for losing essential #SerialEM configuration files - a video tutorial explaining file types, backup and restore strategies is now online at vimeo.com/1023251181

vimeo.com

Backing Up a SerialEM Setup

This is "Backing Up a SerialEM Setup" by SerialEM Tutorials on Vimeo, the home for high quality videos and the people who love them.

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Guenter Resch @nexperion.net · 19/09/2024

The first of a series of new #SerialEM tutorial videos is online - Autocontouring of Grid Squares. 🎉 Let us know what you think and what topics you would like to see covered in the future!

vimeo.com

Autocontouring of Grid Squares

This is "Autocontouring of Grid Squares" by SerialEM Tutorials on Vimeo, the home for high quality videos and the people who love them.

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Guenter Resch @nexperion.net · 18/06/2024

Last week's release of #SerialEM beta testing introduces "Multiple Grid Ops", an interface to auto acquire grid maps, square maps, and final data from multiple grids in a row using TFS/JEOL autoloaders - for details see bio3d.colorado.edu/SerialEM/bet..., feedback from early adopters is welcome!

The Multiple Grid Operations Interface in front of an autocontoured grid

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Guenter Resch @nexperion.net · 15/06/2024

Could one of my friends using #SerialEM share a full grid montage of a "typical" cryo SPA grid (including broken squares, thick ice, thin ice, ...). I'd need the nav and the mrc file to run some tests ...

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