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Nathan Salomonis

@nathansalomonis.bsky.social
72 followers 45 following 2 posts

Computational biology and splicing regulation

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Nathan Salomonis @nathansalomonis.bsky.social · 08/05/2025
New in STM, check out our integrative bulk & single-cell long-read analysis to discover and test new therapies in leukemia. We developed OncoSplice, to define new splicing defined subtypes and predict regulators. PRMT5 inhibition partially rescued mis-splicing & inhibited leukemic growth. More soon!
science.org
Splicing regulatory dynamics for precision analysis and treatment of heterogeneous leukemias
Broad dysregulated splicing in AML partially phenocopies splicing factor mutations, is prognostic, and can be pharmacologically reversed.
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Reposted by Nathan Salomonis
Kaia Mattioli @kaiamattioli.bsky.social · 26/03/2025
our work on the molecular differences between transcription factor isoforms is out now in Molecular Cell! key point: 2/3rds of TF isos differ in properties like DNA binding & transcriptional activity many are "negative regulators" & misexpressed in cancer www.sciencedirect.com/science/arti...
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Reposted by Nathan Salomonis
Albert Vilella, PhD. @albertvilella.bsky.social · 13/12/2024
This means that the work stemming out of the use of this models can be used without licensing issues, including for commercial use.
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Reposted by Nathan Salomonis
Prasath Lab CCHMC @prasathlab.com · 08/12/2024
New algorithm for spatial transcriptome analysis that predicts the crosstalk of cell types co-localized in tissue niches. Also studies the downstream effects of cell-cell interactions by inferring covarying gene programs. doi.org/10.1038/s414... #spatial #transcriptomics #scrnaseq #NMF
doi.org
NiCo identifies extrinsic drivers of cell state modulation by niche covariation analysis - Nature Communications
A key question in single-cell biology is how cells communicate and exchange information with neighboring cells in tissues. Here, the authors introduce NiCo to predict the downstream effect of cell-cel...
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Reposted by Nathan Salomonis
Bart Deplancke @bartdeplancke.bsky.social · 08/12/2024
Major milestone: Tabula Sapiens 2.0 maps tissue composition & TF expression in 175 cell types, identifying 745 ubiquitous & 890 cell type-specific TFs (many still uncharacterized -> #Codebook) w/ roles in tissue homeostasis, stress response & metabolism. #SingleCell www.biorxiv.org/content/10.1...
biorxiv.org
Tabula Sapiens reveals transcription factor expression, senescence effects, and sex-specific features in cell types from 28 human organs and tissues
The Tabula Sapiens is a reference human cell atlas containing single cell transcriptomic data from more than two dozen organs and tissues. Here we report Tabula Sapiens 2.0 which includes data from ni...
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Reposted by Nathan Salomonis
Leander @le-and-er.bsky.social · 21/11/2024
Super excited to share our Human Neural Organoid Atlas, now out in Nature! Led by @zhisonghe.bsky.social @josch1.bsky.social, and myself, this resource was created from 36 scRNA-seq datasets—totalling over 1.7 million cells! 🔬✨
 www.nature.com/articles/s41...
 Find out how it can serve you ⏬
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nature.com
An integrated transcriptomic cell atlas of human neural organoids - Nature
A human neural organoid cell atlas integrating 36 single-cell transcriptomic datasets shows cell types and states and estimates transcriptomic similarity between primary and organoid counterparts, sho...
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