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MultiQC

@multiqc.info
444 followers 10 following 33 posts

Open-source tool to simplify and streamline quality control analysis, from @seqera.io

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Seqera @seqera.io · 20/05/2026
@multiqc.info has ~200 config options for customizing reports: renaming samples, reordering modules, dropping stats columns, tweaking plot defaults, and more.📊 But most users don't know what's possible, so we built a MultiQC Config Wizard. hubs.la/Q04hgKlS0
hubs.la
Introducing the MultiQC Config Wizard | Seqera
A new static HTML wizard for browsing, building, and validating MultiQC config files. Learn how Pydantic powers the wizard, as well as docs and VSCode integration.
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MultiQC @multiqc.info · 19/05/2026
Happy to say MultiQC v1.35 is out 🎉 The headline feature: a MultiQC Config Wizard 🧙‍♂️ Browse every config option with help text and examples, fill out a form with live validation, or paste in your existing YAML and have it explained and checked. Video below 👇
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Seqera @seqera.io · 06/01/2026
New year, new opportunities!🎆 Subscribe to our monthly newsletter for exclusive @nextflow.io and Seqera updates, including new product features, training sessions, events, and more. 📧 hubs.la/Q03YRwmn0
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Maxime U Garcia @maxulysse.github.io · 19/12/2025
On a server bright on Christmas night, MultiQC sang, “All stats unite!” From FastQC, pipelines adored, One tidy report—what could you want more?
First line Multiqc CLI output, saying MultiQC, followed by a Xmas tree emoji and version 1.31
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MultiQC @multiqc.info · 09/12/2025
MultiQC v1.33 is out! 🎉 4 new modules, 60% faster parquet merging, and lots of improvements across the board. Here's what's new 🧵
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Seqera @seqera.io · 08/12/2025
Stay in the loop with everything @nextflow.io, @seqera.io, @multiqc.info, and more!✉️ Subscribe to our newsletter to get monthly updates on new product features, industry and community insights, events, and training workshops. 📚 Subscribe now: hubs.la/Q03Xf2NB0
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Seqera @seqera.io · 04/12/2025
Importance of being open!🌍 One of the greatest strengths of @multiqc.info is open source development.🧵What started as a one-person project in 2015 has grown into a collaborative effort involving 235 contributors today.🧵 📚 Read the blog post: hubs.la/Q03WRgb20
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MultiQC @multiqc.info · 26/11/2025
#NextflowSummit now available on-demand! Be sure to check out the "MultiQC turns 10" talk by @ewels.bsky.social 👀
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MultiQC @multiqc.info · 19/11/2025
💡A simple idea emerged from the frustration of manually parsing countless bioinformatics tool outputs.📊 That idea became MultiQC, and today we're celebrating 10 years of transforming global bioinformatics🌎 📗Read the highlights blog by @seqera.io: hubs.la/Q03TXC_N0
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Seqera @seqera.io · 24/10/2025
🎉 Celebrating 10 years of @multiqc.info! 📊 The numbers speak volumes: 🔹 Support for ~170 bioinformatics tools 🔹 1 run every 3 seconds (25k+ daily runs) 🔹 From single contributor to 235 contributors 🔹 7000+ journal citations (~8-9 per day) 📚 Discover a timeline of innovation: hubs.ly/Q03PsbTP0
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Seqera @seqera.io · 05/08/2025
🎉Celebrating 10 Years of @multiqc.info What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm. 🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
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MultiQC @multiqc.info · 04/08/2025
🎉 Today marks 10 years since the very first @multiqc.info commit! What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
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Ming Tommy Tang @tommytang.bsky.social · 30/06/2025
9/ Tools you need: FastQC: first defense MultiQC: overview across samples IGV: visualize coverage & peaks PCA plots: always Links: www.bioinformatics.babraham.ac.uk/projects/fa... multiqc.info/ software.broadinstitute.org/software/igv/
multiqc.info
Seqera
Seqera | The Home for Open Science | From the creators of Nextflow, Wave, and MultiQC
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MultiQC @multiqc.info · 09/04/2025
Did you see, #MultiQC v1.28 went out a few days ago! There are a handful of release highlights for this version, but perhaps the most exciting is that .gif, .webp and .tiff files are now supported for #CustomContent - you can finally put your favourite gifs into reports! Just name them *_mqc.gif
media.tenor.com
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Ming Tommy Tang @tommytang.bsky.social · 25/01/2025
🔗 QC reads with FastQC: www.bioinformatics.babraham.ac.uk/projects/fa... RNAseqqc github.com/getzlab/rna... 🔗 Check out multiQC for aggregated reports:multiqc.info/ multiqc.info/🔬 Learn to visualize data with IGV: software.broadinstitute.org/software/igv/ Start every analysis with rigorous QC! 🚀
multiqc.info
Seqera
Seqera | The Home for Open Science | From the creators of Nextflow, Wave, and MultiQC
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Miss Salmonella @misssalmonella.bsky.social · 28/01/2025
One of my top tools for primary data quality analysis, so essential for downstream analyses: #MultiQC. This recent update is incredibly useful! seqera.io/multiqc/ github.com/MultiQC/Mult...
seqera.io
MultiQC | Seqera
Aggregate results from bioinformatics analyses across many samples into a single report
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Maxime U Garcia @maxulysse.github.io · 14/02/2025
Roses are red, Violets are blue, @multiqc.info knows it's Valentine too
Multiqc, a rose emoji and the version (1.27.1)
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Seqera @seqera.io · 23/01/2025
Read the blog post: hubs.la/Q033Kjp30
hubs.la
AI Summaries now available in MultiQC | Seqera
AI Summaries allow MultiQC users to quickly generate summaries of their reports, offering insights without needing to comb through every detail manually.
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Seqera @seqera.io · 23/01/2025
The gold standard in #bioinformatics reporting just got even better! #AI Summaries are now available in @multiqc.info🎉 Find out more: hubs.la/Q033Kjp30
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Stephen Turner @stephenturner.us · 23/01/2025
One of the cooler things I saw at the Nextflow summit a few months ago. Can't wait to try this.
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MultiQC @multiqc.info · 23/01/2025
MultiQC v1.27 was released yesterday. It includes one major new feature: === ✨ AI summaries ✨ === LLMs are a natural next step for helping scientists understand large datasets. @multiqc.info now has built-in integration with @seqera.io AI as well as #OpenAI and #AnthropicAI 🤖
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Greg Fedewa @science.ninja · 23/12/2024
I'm excited to see my contributions made it into this version! It was a lot easier to add new modules than I expected. If anyone is wishing a tool was supported, you should just try adding it.
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Lukas Forer @lukfor.bsky.social · 22/12/2024
Super cool! MultiQC now supports Haplocheck! 🚀 @sebschoenherr.bsky.social @whansi.bsky.social
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jonasscheid.bsky.social @jonasscheid.bsky.social · 22/12/2024
Nice tiny Xmas gift in the new release 🎄. Percolator feature weights can be simply plotted now with multiQC!
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MultiQC @multiqc.info · 22/12/2024
Sneaking a little holiday gift in at the last moment: @multiqc.info v1.26 just released! - 🆕 10 new tools supported - 💫 12 modules updated - 🛠️ Bug fixes, improvements and refactoring! If you're quick, you might see a little christmassy easter egg! github.com/MultiQC/Mult...
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Phil Ewels @ewels.bsky.social · 16/12/2024
I'm looking for a nice pull-quote about @multiqc.info that we can use in some @seqera.io materials, if anyone fancies dropping something nice into the comments as an early Christmas present for me, that would be much appreciated! 🙏🏻 😅
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Galaxy Project @galaxyproject.bsky.social · 23/10/2024
🍎 Master the art of Quality Control for NGS data with @galaxytraining.bsky.social! Learn how to assess, improve, and summarize sequencing quality using tools like FASTQC, Cutadapt, and MultiQC. Catch errors early and save time on downstream analysis! training.galaxyproject.org/training-mat...
training.galaxyproject.org
Sequence analysis / Quality Control / Hands-on: Quality Control
Analyses of sequences
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Phil Ewels @ewels.bsky.social · 17/11/2023
A highlight of this release is improved config parsing, with better support for environment variables 💫 Every MultiQC config option can now be set via an env var, and YAML configs can interpolate env vars into their strings:
Example of YAML config with environment variable string interpolation.
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MultiQC @multiqc.info · 23/11/2024
Just out: @multiqc.info v1.25.2 🎉 This patch release fixes a whole host of bugs, the most important one being for #bcl2fastq 🐛 There are also a host of small additions sneaking in for #ngsbits, #picard, #Nanostat, #Samtools and more - so well worth the update! github.com/MultiQC/Mult...
github.com
Release v1.25.2 · MultiQC/MultiQC
MultiQC v1.25.2 - 2024-11-20 Multiple bug fixes and minor updates. Updates Add natural sort for sample sorting (#2959) Custom content: for plot_type: image, support custom_data config with section...
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Stephen Turner @stephenturner.us · 14/11/2024
Hey! I recently started blogging again at blog.stephenturner.us I used to write at gettinggeneticsdone.blogspot.com. Check out @ewels.bsky.social's talk on @multiqc.info at this year's @nextflow.io summit. I wrote about it here: blog.stephenturner.us/p/nextflow-s...
blog.stephenturner.us
Paired Ends | Substack
Bioinformatics, computational biology, and data science updates from the field. Occasional posts on programming. Click to read Paired Ends, a Substack publication with thousands of subscribers.
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MultiQC @multiqc.info · 13/11/2024
Hello world! Setting up a new account here to post updates about new releases and other things. If you're new to @multiqc.info then check out seqera.io/multiqc/ to see what it's all about and have a go at running MultiQC in your browser!
seqera.io
MultiQC | Seqera
Aggregate results from bioinformatics analyses across many samples into a single report
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