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Iñaki Ruiz-Trillo

@multicellgenome.bsky.social
2.2K followers 2.2K following 291 posts

How did single cells become animals? We study animal's closest unicellular relatives to reconstruct the origin of animal life. #Multicellularity www.multicellgenome.com

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Reposted by Iñaki Ruiz-Trillo
Emily Mitchell @egmitchell.bsky.social · 03/10/2026
Wrapping up a fantastic field season #laserscanning #Ediacaran fossils in Newfoundland @discoverygeoparknl.bsky.social and Mistaken Point. Our 10th year of laser scanning 🥳
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Reposted by Iñaki Ruiz-Trillo
Casey Dunn @caseywdunn.bsky.social · 05/10/2026
Interested in joining our lab (dunnlab.org) and YIBS as a postdoc? I'm looking for someone to work on siphonophores, diversity in the open ocean, or natural history. If that's you, please reach out this week to discuss a nomination for the Donnelley Postdoc Fellowship - yibs.yale.edu/donnelley-fe...
dunnlab.org
The Dunn Lab
Casey Dunn's laboratory in the Department of Ecology and Evolutionary Biology at Yale University.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 01/10/2026
#Evolution can innovate without inventing. Cell type families can retain ancient regulatory “vocabularies”, while individual cell types evolve by reshuffling how those motifs are combined. @natecoevo.nature.com New cell types from old regulatory words. We like this! doi.org/10.1038/s415...
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 30/09/2026
A new sea urchin joins the evo-devo toolkit! Great to see Mespilia globulus established as a new model. @ferdix.bsky.social @elife.bsky.social One model can reveal a specific mechanism. Multiple models can reveal how evolution works. elifesciences.org/reviewed-pre...
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 29/09/2026
Excellent questions! 🧽 Where's the sponge function on my phone? — Airplane mode! 🐙 Will land-octopi scrub themselves with phones in 380m years? — Probably no octopi by then. Nor phones.🥲 🌈 How about superradiant tryptophones? — Will need to consider this one. 🤔
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 29/09/2026
jajaja, pues si! demasiados y todo!
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 29/09/2026
Nice work @thibautbrunet.bsky.social et al. It fits a view we find compelling: the ancestor of animals may have switched between different cell states, and perhaps different multicellular entities. Maybe we should reconstruct an ancestral life cycle, not an ancestral cell type. #protistsOnSky
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Reposted by Iñaki Ruiz-Trillo
Julia Van Etten @couchmicroscopy.bsky.social · 04/09/2026
Our paper describing two new photosynthetic Paulinella species is out today in JPhycol! This is the kind of work I love to do and even it though took many years to finish, we had a lot of fun stomping around together in the marsh! onlinelibrary.wiley.com/doi/10.1111/... #protistsonsky
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 28/09/2026
Interesting piece by @quantamagazine.org on how transposable elements went from "junk DNA" to drivers of genome innovation. Could this negotiation between selfish elements and host genomes have contributed to the origin of animal gene regulation? Holozoans may help us find out. 🧬 #Protistsonsky
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 28/09/2026
We have a new branch in the family tree of animals: Atreyea- a previously unrecognized lineage among the closest unicell relatives of animals. Led by @konsmitsi.bsky.social & @freejakoba.bsky.social together with a fantastic team of collaborators. 🔗 papers.ssrn.com/sol3/papers.... #protistsOnSky
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 28/09/2026
Very grateful to have been part of such a special and emotional day celebrating Sara Bray & Nick Brown at their Retirement Symposium. Two outstanding scientists and, even more importantly, truly wonderful people. Thank you, Sara and Nick, for such a memorable day! #protistsOnSky
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Reposted by Iñaki Ruiz-Trillo
Pawel Burkhardt @pawelburkhardt.bsky.social · 16/09/2026
Lovely to see several pieces of our ctenophore work featured in this beautiful new story from @quantamagazine.org 🪼 Great piece by @mstarling.bsky.social, also featuring work by @stevehaddock.bsky.social, @arnausebe.bsky.social & @hejnol.bsky.social. www.quantamagazine.org/ctenophores-...
quantamagazine.org
Ctenophores Aren’t Just Beautiful. They’re Biological Wonders. | Quanta Magazine
Comb jellies are helping answer fundamental questions in biology, from how the earliest nervous systems evolved to how bioluminescence works.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 25/09/2026
Great to see this, Omaya! The search for the missing diversity of unicellular relatives of animals is gaining momentum, and it’s fantastic to see more labs joining the hunt. New #ichthyosporeans would be exciting!! new holozoan lineages too! #protistsOnSky #missingrelatives
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 09/09/2026
what a team!!😀
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 09/09/2026
congrats Luis!! impresionante!
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Reposted by Iñaki Ruiz-Trillo
jpgerdt.bsky.social @jpgerdt.bsky.social · 24/07/2026
Ruibao's first paper from the lab is out in @nature.com . www.nature.com/articles/s41.... Collab with @multicellgenome.bsky.social & @jennahed.bsky.social. How did cells stick together and form the first animals? The protist Ministeria suggests cellular aggregation had a role. @iuqcb.bsky.social
nature.com
A unicellular relative links aggregative multicellularity to animal origins - Nature
Aggregative multicellularity was key to the evolution of the multicellular animal genetic toolkit.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 15/07/2026
🚨 Master's internship available at our lab. Join us to investigate the phenotypic plasticity and life cycles of several #ichthyosporean species using cell biology & microscopy. Interested? Get in touch with Vika Shabardina or DM us. Link: www.ibe.upf-csic.es/work-with-us...
ibe.upf-csic.es
Open calls - Institut de Biologia Evolutiva - CSIC UPF - UPF
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 15/07/2026
Did cell types exist before animals? What if the first cell types evolved before the first animals? We'll use #ichthyosporeans, tiny microbes with the potential to reshape how we think about animal origins. #ProtistsOnSKy @ibe-barcelona.bsky.social @prbb.org @csic.es 🧵
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 15/07/2026
🚨 Master's internship available at our lab. Join us to mine global environmental sequencing datasets and build the first global atlas of this fascinating lineage. Interested? Get in touch with Guifré Torruella or DM Link: www.ibe.upf-csic.es/work-with-us... @csic.es
ibe.upf-csic.es
Open calls - Institut de Biologia Evolutiva - CSIC UPF - UPF
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 15/07/2026
Most people have never heard of #apusomonads. Yet these tiny protists occupy an important position in the eukaryotic tree of life. And we know so little about them! We're looking for a Master's student to help uncover their hidden diversity. #ProtistsOnSky 🧵 @ibe-barcelona.bsky.social @prbb.org
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 15/07/2026
Congrats Ania and Lily!!
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 14/07/2026
7/7 Animal sensory systems were probably built by integrating ancient ones into new biological architectures. Congrats to the authors! @smannsaker.bsky.social @pawelburkhardt.bsky.social @jeffcolgren.bsky.social
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 14/07/2026
6/7 Perhaps this reflects a broader evolutionary principle. The ancestor of animals may already have possessed a rich molecular toolkit. Different holozoan lineages then expanded different parts of that toolkit independently. Evolution was already experimenting long before animals appeared.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 14/07/2026
5/7 The evolutionary dynamics are also interesting. Some TRP families remain relatively conserved. Others show extensive lineage-specific expansions. That pattern reminds me of receptor tyrosine kinases in choanoflagellates and filastereans: www.science.org/doi/10.1126/...
science.org
Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases
A genomic survey suggests that cytoplasmic tyrosine kinases diversified before the establishment of multicellular organisms.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 14/07/2026
4/7 Perhaps the evolutionary route toward sensory complexity began with new ways of organizing existing ones inside single cells. Subcellular patterning before cellular specialization. This fits well with the "beta-testing" pre-metazoan phase we recently proposed: doi.org/10.1038/s443...
doi.org
A smartphone analogy to explore the origin of animals - The EMBO Journal
How animals evolved from their unicellular ancestor is a fundamental biological question. The fact that all animals are monophyletic—sharing a single common ancestor—implies their origin from unicellular eukaryotes was likely driven by rare and highly advantageous innovations. While the fossil record and initial genomic comparisons suggested animals originated by the rapid acquisition of many novel genes, new research on animal’s closest unicellular relatives reveals most of those genes originated before animals evolved. Here we present a new model for animal origins, which shares similarities with the origin of one of the greatest technological innovations of our time: the smartphone. We show that the origin of both animals and smartphones was due to the integration and repurposing of pre-existing components driven by a novel “operating system”, rather than the sudden emergence of many new parts. This model offers testable predictions and a new theoretical framework for understanding complex biological innovation.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 14/07/2026
3/7 The spatial segregation is particularly interesting to us. Different TRP families localize to different regions of the collar complex and flagellum. Even within a single cell, sensory systems appear to be spatially organized. That may have broader implications for animal origins.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 14/07/2026
2/7 Animals rely on specialized sensory cells. Their unicellular ancestors probably did not. This study shows that closest unicellular relatives of animals already possessed a remarkably diverse repertoire of TRP channels and that these proteins occupy distinct subcellular territories.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 14/07/2026
1/7 Really interesting new preprint by Mannsåker et al. on the evolution of TRP channels in #choanoflagellates. But what caught my attention wasn't simply the diversity of these sensory receptors. It was something more general about how biological innovation may arise. 🧵 #protistsOnSky
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 08/07/2026
Thank you for the invitation @embldbunit.bsky.social and the stimulating discussions. I left with many new ideas, more questions to explore, and the feeling that we share an appreciation for exploring the unknown!
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 03/07/2026
Indeed!
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 30/06/2026
The organizer requires β-catenin and TGFβ signalling (which seem animal-specific). So, now we wonder: How did this population of cells acquire that capacity? Could some kind of proto-organizer have existed before animals? Congrats to the authors!
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 30/06/2026
1/2 Embryonic organizers, a group of cells that can coordinate the behaviour of many others. have been viewed as one of the true innovations of animals. Fascinating new paper @kremnyovs.bsky.social @hejnol.bsky.social @genikhovich.bsky.social et al. now reports organizer activity in #ctenophores.
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Reposted by Iñaki Ruiz-Trillo
Journal of Eukaryotic Microbiology @jeukmicro.bsky.social · 25/06/2026
Do you have interesting protist research that you want to publish? Now is a great time to consider The Journal of Eukaryotic Microbiology. But don't just take our word for it, check out some of our latest metrics! onlinelibrary.wiley.com/journal/1550... #protistsonsky
a light brown background featuring the cover of The Journal of Eukaryotic Microbiology, the Wiley and ISOP logos, the words Discover research that resonates, 2025 Journal Impact Factor:3.3, 2025 Full Text Views 205,750, 2025 CiteSource: 5.0, a green box with the words Discover our metrics. Icons in green next to each bullet point.
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Reposted by Iñaki Ruiz-Trillo
Ricard Solé @ricardsole.bsky.social · 23/06/2026
Can a single cell behave like a Bayesian agent? In this new paper by @maorknak.bsky.social, E Casacuberta & @multicellgenome.bsky.social show that eukaryotic cells trained with reliable cues survived stress better by using Bayesian guesses @ibe-barcelona.bsky.social journals.aps.org/prxlife/pdf/...
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 23/06/2026
3/3 Interestingly, ctenophore cadherins do not look exactly like the classical cadherins found in most animals. And yet the interactions still work! Another reminder that evolution works with whatever is available. Congrats to the authors!
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 23/06/2026
2/3 The authors show that ctenophores possess a functional #cadherin–catenin interaction network. The cadherin–catenin complex is one of the central systems underlying animal cell adhesion and tissue organization.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 23/06/2026
1/3 Cell adhesion is considered one of the foundations of animal #multicellularity. Yet whether #ctenophores possess a functional cadherin–catenin complex has remained surprisingly controversial. A new study revisits that question. 🧵 @ctenophoresrock.bsky.social
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 14/06/2026
Plants had different unicellular ancestors and followed their own, different history. So, both plants and animals (and other lineages) became multicellular independently
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 12/06/2026
9/9 Perhaps the most important lesson for us is that even globally distributed microorganisms have histories. The challenge is learning how to read them.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 12/06/2026
8/9 And they raise an intriguing possibility. If microorganisms can expand across ocean basins while still retaining traces of their history... How much reflects natural processes? How much bears the signature of human-mediated dispersal?
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 12/06/2026
7/9 More broadly, our results provide a unified framework for comparing biogeographic patterns across major eukaryotic groups. A unified framework for discussing dispersal, connectivity and population structure from protists to animals.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 12/06/2026
6/9 This matters because population genetics contains historical information. Present-day distributions tell us where organisms are. Genetic structure helps reveal how they got there.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 12/06/2026
5/9 Instead, many protists appear to occupy an intermediate state: large geographic ranges, high connectivity, and moderate genetic differentiation. Neither completely isolated. Nor completely mixed.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 12/06/2026
4/9 Yet they are not genetically homogeneous. The same haplotypes can occur across distant oceans. At the same time, populations frequently retain detectable genetic structure. This combination is difficult to reconcile with a simple view of unrestricted cosmopolitanism.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 12/06/2026
3/9 What emerges is a striking contrast. Animals and plants often show genetic diversity that is largely restricted to particular ocean basins. Many protists do not. They often span enormous geographic distances.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 12/06/2026
2/9 Our study, lead by Rubén, compares #protists, animals and plants within a single population-genetic framework. We ask how their genetic diversity is distributed across the world's oceans. Link: www.science.org/doi/10.1126/...
science.org
Marine population-genetic inferences reveal stronger oceanic structure in protists than Archaeplastida (plants) and Metazoa (animals)
Global metabarcoding reveals contrasting oceanic population-genetic structure between protists and multicellular eukaryotes.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 12/06/2026
1/9 For years, debates about microbial biogeography have sometimes been framed as a choice. Either microorganisms are everywhere. Or geography matters. But what if that is a false choice? @ibe-barcelona.bsky.social @icreacommunity.bsky.social @prbb.org @csic.es #protistsOnSKy
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 10/06/2026
7/7 In any case, it is interesting to see how microbial communities generated, exchanged and redistributed evolutionary novelty long before the emergence of eukaryotes, resembling other transitions. Congratulations to all authors on such a thought-provoking contribution!
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 10/06/2026
6/7 In the context of rampant LGT, a gene showing affinity to extant Myxococcota does not necessarily imply that an ancestor of Myxococcota directly interacted with pre-LECA ancestor. The gene itself could have travelled through multiple microbial lineages long before reaching that population.
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 10/06/2026
5/7 But this raises an important question. When a LECA gene appears most closely related to present-day Myxococcota or Planctomycetota... what exactly are we seeing? A potential direct ecological interaction? Or the footprint of a much older history of gene exchange?
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