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Son Phan

@msphan.bsky.social
96 followers 150 following 0 posts

Research Engineer in BioImage Analysis at Institut Paseur @pasteur.fr, Image Analysis Hub @jytinevez.bsky.social, Schweisguth lab research.pasteur.fr/en/team/4d

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Reposted by Son Phan
Gaëlle Letort @gaellel.bsky.social · 03/09/2026
The final version of the paper presenting our tool EpiCure is now online: journals.biologists.com/dev/article/... !! Thanks again to all collaborators in this project
journals.biologists.com
EpiCure (Epithelial Curation): a versatile and handy tool for curation of epithelial segmentation
Summary: EpiCure is a napari plugin designed to optimise epithelia segmentation and tracking curation through automatic errors detection and ergonomic correction while being easily interoperable with ...
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Reposted by Son Phan
Jean-Yves Tinevez @jytinevez.bsky.social · 27/05/2026
The paper is now published in Current Protocols!! 🎉🥳 currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1... Some personal story below 👇 , and technical details in the linked post that featured the preprint 👉
currentprotocols.onlinelibrary.wiley.com
Automated Optimization of Bacterial Tracking Pipelines With TrackMate 8
Quantitative analysis of bacterial dynamics in time-lapse microscopy requires robust tracking pipelines, yet selecting and optimizing algorithms for specific experiments remains challenging. Indeed, ...
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Reposted by Son Phan
Jean-Yves Tinevez @jytinevez.bsky.social · 22/05/2026
Some news for bioimage analysis support in Paris - Yesterday we organized our first onsite and *multi-site* open-desk in bioimage analysis, between the Institut Pasteur @pasteur.fr and the Institut Jacques Monod @ijmonod.bsky.social
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Reposted by Son Phan
Gaëlle Letort @gaellel.bsky.social · 27/03/2026
I'm happy to present our new tool, EpiCure, a napari plugin to ease correction of segmentation and tracking of epithelia movies, developed in @devstempasteur.bsky.social
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Reposted by Son Phan
Gaëlle Letort @gaellel.bsky.social · 10/03/2026
Thanks to #Appose hackaton with @jytinevez.bsky.social, @ctrue.bsky.social, @nkiaru.bsky.social, @msphan.bsky.social, @strigaud.bsky.social, Carlos, Thomas and Julie, DeXtrusion can be **INSTALLED** and run to detect cell extrusions directly from Fiji 🤩! Appose is amazing
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Reposted by Son Phan
Jean-Yves Tinevez @jytinevez.bsky.social · 09/02/2026
New preprint alert! We developed an automated framework to optimize tracking pipelines for bacteria, along with a nice integration of tools for bacteria imaging, in the recently released TrackMate 8 (Fiji plugin). www.biorxiv.org/content/10.6... 👇🧵
biorxiv.org
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Reposted by Son Phan
Levayer Lab @levayerr.bsky.social · 09/10/2025
Happy to share the last version of our story @currentbiology.bsky.social on the role of interfacial tension in mechanical cell competition led by @leovalon.bsky.social and Alexis Matamoro Vidal www.sciencedirect.com/science/arti...
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Reposted by Son Phan
Jean-Yves Tinevez @jytinevez.bsky.social · 07/10/2025
Job alert! We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? See also on the forum: forum.image.sc/t/research-e...
forum.image.sc
Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA
Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...
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